Miyakogusa Predicted Gene
- Lj0g3v0235829.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0235829.1 tr|Q8LNY6|Q8LNY6_WHEAT G protein beta subunit
OS=Triticum aestivum GN=TaGB1 PE=1 SV=1,26.79,0.002,WD40,WD40 repeat;
GUANINE NUCLEOTIDE-BINDING PROTEIN BETA, PLANT (G PROTEIN BETA),NULL;
GUANINE NUCL,gene.g18439.t1.1
(198 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G34460.1 | Symbols: AGB1, ELK4, ATAGB1 | GTP binding protein ... 214 4e-56
AT4G34460.4 | Symbols: AGB1, ELK4, ATAGB1 | GTP binding protein ... 213 5e-56
AT4G34460.2 | Symbols: AGB1, ELK4, ATAGB1 | GTP binding protein ... 213 8e-56
AT4G34460.3 | Symbols: AGB1, ELK4, ATAGB1 | GTP binding protein ... 184 4e-47
AT5G25150.1 | Symbols: TAF5 | TBP-associated factor 5 | chr5:867... 68 4e-12
AT3G49660.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 62 2e-10
AT1G61210.2 | Symbols: | Transducin/WD40 repeat-like superfamil... 60 8e-10
AT1G61210.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 60 8e-10
AT1G11160.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 60 1e-09
AT5G08390.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 58 5e-09
AT4G02730.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 57 6e-09
AT5G23430.2 | Symbols: | Transducin/WD40 repeat-like superfamil... 56 2e-08
AT5G23430.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 56 2e-08
AT5G13480.2 | Symbols: FY | Transducin/WD40 repeat-like superfam... 55 4e-08
AT2G43770.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 54 6e-08
AT2G41500.1 | Symbols: LIS, EMB2776 | WD-40 repeat family protei... 54 6e-08
AT5G13480.1 | Symbols: FY | Transducin/WD40 repeat-like superfam... 54 6e-08
AT5G52820.1 | Symbols: | WD-40 repeat family protein / notchles... 54 9e-08
AT3G18140.2 | Symbols: | Transducin/WD40 repeat-like superfamil... 52 2e-07
AT3G18140.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 52 3e-07
AT2G22040.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 52 3e-07
AT1G52360.1 | Symbols: | Coatomer, beta' subunit | chr1:1949928... 50 8e-07
AT3G15980.4 | Symbols: | Coatomer, beta' subunit | chr3:5411699... 50 1e-06
AT3G15980.1 | Symbols: | Coatomer, beta' subunit | chr3:5411699... 50 1e-06
AT3G15980.3 | Symbols: | Coatomer, beta' subunit | chr3:5412015... 50 1e-06
AT3G15980.2 | Symbols: | Coatomer, beta' subunit | chr3:5412015... 50 1e-06
AT3G15980.5 | Symbols: | Coatomer, beta' subunit | chr3:5412015... 50 1e-06
AT1G52360.2 | Symbols: | Coatomer, beta' subunit | chr1:1949942... 49 2e-06
AT1G10580.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 49 2e-06
AT2G05720.1 | Symbols: | Transducin/WD40 repeat-like superfamil... 48 4e-06
AT1G79990.5 | Symbols: | structural molecules | chr1:30085910-3... 48 4e-06
AT1G79990.3 | Symbols: | structural molecules | chr1:30085910-3... 48 4e-06
AT1G79990.1 | Symbols: | structural molecules | chr1:30084522-3... 48 5e-06
>AT4G34460.1 | Symbols: AGB1, ELK4, ATAGB1 | GTP binding protein
beta 1 | chr4:16477393-16479266 REVERSE LENGTH=377
Length = 377
Score = 214 bits (544), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 121/198 (61%), Positives = 133/198 (67%), Gaps = 41/198 (20%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
F+SGSCD TARLWDTR ASRAV+TFHGHEGDVNTVKFFPDG RFGTGSDDGTCRL+DIRT
Sbjct: 220 FISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRT 279
Query: 62 GHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGY-TNGACYVWDTLLAKVVLNLGSLQN 120
GHQLQV YQ H D E VTS+AFS+SGRLLFAGY +N CYVWDTLL +VVL+LG Q+
Sbjct: 280 GHQLQV-YQPHGDGENGPVTSIAFSVSGRLLFAGYASNNTCYVWDTLLGEVVLDLGLQQD 338
Query: 121 SHDGRISCLGSVKFFGEQDHVLVLESQFSSSPMLTILTTKNLLSWDILALALVNHCIFIS 180
SH RISCLG L + S+ L T SWD
Sbjct: 339 SHRNRISCLG-------------LSADGSA------LCTG---SWD-------------- 362
Query: 181 TVFRNSNIWAFGGHRKVI 198
N IWAFGGHR+VI
Sbjct: 363 ---SNLKIWAFGGHRRVI 377
>AT4G34460.4 | Symbols: AGB1, ELK4, ATAGB1 | GTP binding protein
beta 1 | chr4:16477393-16479266 REVERSE LENGTH=372
Length = 372
Score = 213 bits (543), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 121/198 (61%), Positives = 133/198 (67%), Gaps = 41/198 (20%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
F+SGSCD TARLWDTR ASRAV+TFHGHEGDVNTVKFFPDG RFGTGSDDGTCRL+DIRT
Sbjct: 215 FISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRT 274
Query: 62 GHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGY-TNGACYVWDTLLAKVVLNLGSLQN 120
GHQLQV YQ H D E VTS+AFS+SGRLLFAGY +N CYVWDTLL +VVL+LG Q+
Sbjct: 275 GHQLQV-YQPHGDGENGPVTSIAFSVSGRLLFAGYASNNTCYVWDTLLGEVVLDLGLQQD 333
Query: 121 SHDGRISCLGSVKFFGEQDHVLVLESQFSSSPMLTILTTKNLLSWDILALALVNHCIFIS 180
SH RISCLG L + S+ L T SWD
Sbjct: 334 SHRNRISCLG-------------LSADGSA------LCTG---SWD-------------- 357
Query: 181 TVFRNSNIWAFGGHRKVI 198
N IWAFGGHR+VI
Sbjct: 358 ---SNLKIWAFGGHRRVI 372
>AT4G34460.2 | Symbols: AGB1, ELK4, ATAGB1 | GTP binding protein
beta 1 | chr4:16477393-16478769 REVERSE LENGTH=315
Length = 315
Score = 213 bits (541), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 121/198 (61%), Positives = 133/198 (67%), Gaps = 41/198 (20%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
F+SGSCD TARLWDTR ASRAV+TFHGHEGDVNTVKFFPDG RFGTGSDDGTCRL+DIRT
Sbjct: 158 FISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRT 217
Query: 62 GHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGY-TNGACYVWDTLLAKVVLNLGSLQN 120
GHQLQV YQ H D E VTS+AFS+SGRLLFAGY +N CYVWDTLL +VVL+LG Q+
Sbjct: 218 GHQLQV-YQPHGDGENGPVTSIAFSVSGRLLFAGYASNNTCYVWDTLLGEVVLDLGLQQD 276
Query: 121 SHDGRISCLGSVKFFGEQDHVLVLESQFSSSPMLTILTTKNLLSWDILALALVNHCIFIS 180
SH RISCLG L + S+ L T SWD
Sbjct: 277 SHRNRISCLG-------------LSADGSA------LCTG---SWD-------------- 300
Query: 181 TVFRNSNIWAFGGHRKVI 198
N IWAFGGHR+VI
Sbjct: 301 ---SNLKIWAFGGHRRVI 315
>AT4G34460.3 | Symbols: AGB1, ELK4, ATAGB1 | GTP binding protein
beta 1 | chr4:16477586-16479266 REVERSE LENGTH=347
Length = 347
Score = 184 bits (466), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 90/115 (78%), Positives = 97/115 (84%), Gaps = 2/115 (1%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
F+SGSCD TARLWDTR ASRAV+TFHGHEGDVNTVKFFPDG RFGTGSDDGTCRL+DIRT
Sbjct: 220 FISGSCDSTARLWDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRT 279
Query: 62 GHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGY-TNGACYVWDTLLAKVVLNL 115
GHQLQV YQ H D E VTS+AFS+SGRLLFAGY +N CYVWDTLL + L
Sbjct: 280 GHQLQV-YQPHGDGENGPVTSIAFSVSGRLLFAGYASNNTCYVWDTLLGEFSCRL 333
>AT5G25150.1 | Symbols: TAF5 | TBP-associated factor 5 |
chr5:8677117-8682058 FORWARD LENGTH=669
Length = 669
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 71/137 (51%), Gaps = 15/137 (10%)
Query: 2 FVSGSCDGTARLWDT-RVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
F S S D TAR+W R+ + ++ GH DV+ V++ P+ N TGS D T RL+D++
Sbjct: 475 FASCSHDRTARIWSMDRI--QPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQ 532
Query: 61 TGHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLAKVVLNLGSLQN 120
TG ++++ S V S+A S GR + +G +G +WD A+ + L
Sbjct: 533 TGECVRIFIGHRS-----MVLSLAMSPDGRYMASGDEDGTIMMWDLSTARCITPLM---- 583
Query: 121 SHDGRISCLGSVKFFGE 137
G SC+ S+ + GE
Sbjct: 584 ---GHNSCVWSLSYSGE 597
>AT3G49660.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:18413690-18415223 FORWARD LENGTH=317
Length = 317
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/110 (32%), Positives = 55/110 (50%), Gaps = 5/110 (4%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
M VSGS D T R+WD + ++ H V V F DG+ + S DG CR++D
Sbjct: 127 MIVSGSFDETVRIWDVTTG-KCLKVLPAHSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSG 185
Query: 61 TGHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLAK 110
TGH ++ D+E P V+ + FS +G+ + G + +W+ AK
Sbjct: 186 TGHCVKTLI----DDENPPVSFVRFSPNGKFILVGTLDNTLRLWNISSAK 231
Score = 61.2 bits (147), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 48/145 (33%), Positives = 66/145 (45%), Gaps = 8/145 (5%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
VS S D T +LWD S ++T GH V F P N +GS D T R++D+ T
Sbjct: 86 IVSASDDKTLKLWDVETGS-LIKTLIGHTNYAFCVNFNPQSNMIVSGSFDETVRIWDVTT 144
Query: 62 GHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLAKVVLNLGSLQNS 121
G L+V HSD VT++ F+ G L+ + +G C +WD+ V L +N
Sbjct: 145 GKCLKV-LPAHSD----PVTAVDFNRDGSLIVSSSYDGLCRIWDSGTGHCVKTLIDDENP 199
Query: 122 HDG--RISCLGSVKFFGEQDHVLVL 144
R S G G D+ L L
Sbjct: 200 PVSFVRFSPNGKFILVGTLDNTLRL 224
>AT1G61210.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:22564785-22571555 FORWARD LENGTH=1179
Length = 1179
Score = 60.5 bits (145), Expect = 8e-10, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
+ ++G+ G +LWD A + V+ F GH + + V+F P G +GS D +++DIR
Sbjct: 72 LVLAGASSGVIKLWDVEEA-KMVRAFTGHRSNCSAVEFHPFGEFLASGSSDANLKIWDIR 130
Query: 61 TGHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLAKVV 112
+Q Y+ HS ++++ F+ GR + +G + VWD K++
Sbjct: 131 KKGCIQT-YKGHSRG----ISTIRFTPDGRWVVSGGLDNVVKVWDLTAGKLL 177
Score = 49.3 bits (116), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
SGS D ++WD R +QT+ GH ++T++F PDG +G D +++D+
Sbjct: 115 LASGSSDANLKIWDIR-KKGCIQTYKGHSRGISTIRFTPDGRWVVSGGLDNVVKVWDLTA 173
Query: 62 GHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWD 105
G L + +E P + S+ F LL G + WD
Sbjct: 174 GKLL----HEFKFHEGP-IRSLDFHPLEFLLATGSADRTVKFWD 212
Score = 48.5 bits (114), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 3 VSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 62
VSG D ++WD A + + F HEG + ++ F P TGS D T + +D+ T
Sbjct: 158 VSGGLDNVVKVWDL-TAGKLLHEFKFHEGPIRSLDFHPLEFLLATGSADRTVKFWDLETF 216
Query: 63 HQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNG-ACYVWDTLLAKVVLNLG 116
+ + E V S+ F GR LF G + Y W+ ++ +++G
Sbjct: 217 ELI-----GSTRPEATGVRSIKFHPDGRTLFCGLDDSLKVYSWEPVVCHDGVDMG 266
>AT1G61210.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:22564785-22571555 FORWARD LENGTH=1181
Length = 1181
Score = 60.5 bits (145), Expect = 8e-10, Method: Composition-based stats.
Identities = 32/112 (28%), Positives = 58/112 (51%), Gaps = 6/112 (5%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
+ ++G+ G +LWD A + V+ F GH + + V+F P G +GS D +++DIR
Sbjct: 72 LVLAGASSGVIKLWDVEEA-KMVRAFTGHRSNCSAVEFHPFGEFLASGSSDANLKIWDIR 130
Query: 61 TGHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLAKVV 112
+Q Y+ HS ++++ F+ GR + +G + VWD K++
Sbjct: 131 KKGCIQT-YKGHSRG----ISTIRFTPDGRWVVSGGLDNVVKVWDLTAGKLL 177
Score = 49.3 bits (116), Expect = 2e-06, Method: Composition-based stats.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
SGS D ++WD R +QT+ GH ++T++F PDG +G D +++D+
Sbjct: 115 LASGSSDANLKIWDIR-KKGCIQTYKGHSRGISTIRFTPDGRWVVSGGLDNVVKVWDLTA 173
Query: 62 GHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWD 105
G L + +E P + S+ F LL G + WD
Sbjct: 174 GKLL----HEFKFHEGP-IRSLDFHPLEFLLATGSADRTVKFWD 212
Score = 48.5 bits (114), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 7/115 (6%)
Query: 3 VSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 62
VSG D ++WD A + + F HEG + ++ F P TGS D T + +D+ T
Sbjct: 158 VSGGLDNVVKVWDL-TAGKLLHEFKFHEGPIRSLDFHPLEFLLATGSADRTVKFWDLETF 216
Query: 63 HQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNG-ACYVWDTLLAKVVLNLG 116
+ + E V S+ F GR LF G + Y W+ ++ +++G
Sbjct: 217 ELI-----GSTRPEATGVRSIKFHPDGRTLFCGLDDSLKVYSWEPVVCHDGVDMG 266
>AT1G11160.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:3733406-3739363 FORWARD LENGTH=1021
Length = 1021
Score = 59.7 bits (143), Expect = 1e-09, Method: Composition-based stats.
Identities = 36/129 (27%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
+ ++G+ G +LWD S+ V+ F GH + + V+F P G +GS D R++D R
Sbjct: 72 LVLAGASSGVIKLWDLE-ESKMVRAFTGHRSNCSAVEFHPFGEFLASGSSDTNLRVWDTR 130
Query: 61 TGHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLAKVVLNLGSLQN 120
+Q Y+ H+ ++++ FS GR + +G + VWD K++
Sbjct: 131 KKGCIQT-YKGHTRG----ISTIEFSPDGRWVVSGGLDNVVKVWDLTAGKLLHEF----K 181
Query: 121 SHDGRISCL 129
H+G I L
Sbjct: 182 CHEGPIRSL 190
Score = 52.0 bits (123), Expect = 3e-07, Method: Composition-based stats.
Identities = 32/115 (27%), Positives = 55/115 (47%), Gaps = 7/115 (6%)
Query: 3 VSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTG 62
VSG D ++WD A + + F HEG + ++ F P TGS D T + +D+ T
Sbjct: 158 VSGGLDNVVKVWDL-TAGKLLHEFKCHEGPIRSLDFHPLEFLLATGSADRTVKFWDLETF 216
Query: 63 HQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNG-ACYVWDTLLAKVVLNLG 116
+ + E V ++AF G+ LF G +G Y W+ ++ + +++G
Sbjct: 217 ELIGT-----TRPEATGVRAIAFHPDGQTLFCGLDDGLKVYSWEPVICRDGVDMG 266
>AT5G08390.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:2701448-2706910 FORWARD LENGTH=839
Length = 839
Score = 57.8 bits (138), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
+ +G+ GT +LWD A + V+T GH + +V F P G F +GS D +++DIR
Sbjct: 73 LVAAGAASGTIKLWDLEEA-KVVRTLTGHRSNCVSVNFHPFGEFFASGSLDTNLKIWDIR 131
Query: 61 TGHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLAKVVLNLGSLQN 120
+ Y+ H+ V + F+ GR + +G + VWD K++
Sbjct: 132 KKGCIHT-YKGHTRG----VNVLRFTPDGRWIVSGGEDNVVKVWDLTAGKLLHEF----K 182
Query: 121 SHDGRISCL 129
SH+G+I L
Sbjct: 183 SHEGKIQSL 191
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 6/104 (5%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
F SGS D ++WD R + T+ GH VN ++F PDG +G +D +++D+
Sbjct: 116 FASGSLDTNLKIWDIRKKG-CIHTYKGHTRGVNVLRFTPDGRWIVSGGEDNVVKVWDLTA 174
Query: 62 GHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWD 105
G L + + S+ F LL G + WD
Sbjct: 175 GKLLHEFKSHEG-----KIQSLDFHPHEFLLATGSADKTVKFWD 213
>AT4G02730.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr4:1207759-1209066 FORWARD LENGTH=333
Length = 333
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 33/102 (32%), Positives = 56/102 (54%), Gaps = 5/102 (4%)
Query: 4 SGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 63
S S D T R+WD R ++ GH V V F P N +GS D T R+++++TG
Sbjct: 102 SASDDCTLRIWDARSPYECLKVLRGHTNFVFCVNFNPPSNLIVSGSFDETIRIWEVKTGK 161
Query: 64 QLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWD 105
+++ + HS +P ++S+ F+ G L+ + +G+C +WD
Sbjct: 162 CVRM-IKAHS---MP-ISSVHFNRDGSLIVSASHDGSCKIWD 198
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 50/93 (53%), Gaps = 5/93 (5%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
+ VSGS D T R+W+ + + V+ H +++V F DG+ + S DG+C+++D +
Sbjct: 142 LIVSGSFDETIRIWEVKTG-KCVRMIKAHSMPISSVHFNRDGSLIVSASHDGSCKIWDAK 200
Query: 61 TGHQLQVYYQQHSDNEIPHVTSMAFSISGRLLF 93
G L+ D++ P V+ FS +G+ +
Sbjct: 201 EGTCLKTLI----DDKSPAVSFAKFSPNGKFIL 229
Score = 47.0 bits (110), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 58/114 (50%), Gaps = 5/114 (4%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
+ VS S DG+ ++WD + + V+ KF P+G + D T +L +
Sbjct: 184 LIVSASHDGSCKIWDAKEGTCLKTLIDDKSPAVSFAKFSPNGKFILVATLDSTLKLSNYA 243
Query: 61 TGHQLQVYYQQHSDNEIPHVTSMAFSIS-GRLLFAGYTNGACYVWDTLLAKVVL 113
TG L+VY N++ +TS AFS++ G+ + +G + Y+WD L A+ +L
Sbjct: 244 TGKFLKVYTGH--TNKVFCITS-AFSVTNGKYIVSGSEDNCVYLWD-LQARNIL 293
>AT5G23430.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:7894073-7899862 REVERSE LENGTH=836
Length = 836
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
+ +G+ GT +LWD A + V+T GH + +V F P G F +GS D +++DIR
Sbjct: 73 LVAAGAASGTIKLWDLEEA-KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR 131
Query: 61 TGHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLAKVVLNLGSLQN 120
+ Y+ H+ V + F+ GR + +G + VWD K++
Sbjct: 132 KKGCIHT-YKGHTRG----VNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEF----K 182
Query: 121 SHDGRISCL 129
SH+G+I L
Sbjct: 183 SHEGQIQSL 191
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
F SGS D ++WD R + T+ GH VN ++F PDG +G +D +++D+
Sbjct: 116 FASGSLDTNLKIWDIRKKG-CIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTA 174
Query: 62 GHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWD 105
G +L ++ H + S+ F LL G + WD
Sbjct: 175 G-KLLTEFKSHEG----QIQSLDFHPHEFLLATGSADRTVKFWD 213
>AT5G23430.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:7894073-7899862 REVERSE LENGTH=837
Length = 837
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 10/129 (7%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
+ +G+ GT +LWD A + V+T GH + +V F P G F +GS D +++DIR
Sbjct: 73 LVAAGAASGTIKLWDLEEA-KIVRTLTGHRSNCISVDFHPFGEFFASGSLDTNLKIWDIR 131
Query: 61 TGHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLAKVVLNLGSLQN 120
+ Y+ H+ V + F+ GR + +G + VWD K++
Sbjct: 132 KKGCIHT-YKGHTRG----VNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEF----K 182
Query: 121 SHDGRISCL 129
SH+G+I L
Sbjct: 183 SHEGQIQSL 191
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 48/104 (46%), Gaps = 6/104 (5%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
F SGS D ++WD R + T+ GH VN ++F PDG +G +D +++D+
Sbjct: 116 FASGSLDTNLKIWDIRKKG-CIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTA 174
Query: 62 GHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWD 105
G +L ++ H + S+ F LL G + WD
Sbjct: 175 G-KLLTEFKSHEG----QIQSLDFHPHEFLLATGSADRTVKFWD 213
>AT5G13480.2 | Symbols: FY | Transducin/WD40 repeat-like superfamily
protein | chr5:4326638-4331506 REVERSE LENGTH=653
Length = 653
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 7/105 (6%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
+ VSG D +LWDTR + R + + HGH+ V +VK+ +GN T S D +L+DIR
Sbjct: 269 LLVSGGKDQLVKLWDTR-SGRELCSLHGHKNIVLSVKWNQNGNWLLTASKDQIIKLYDIR 327
Query: 61 TGHQLQVYYQQHSDNEIPHVTSMAFSISGRLLF-AGYTNGACYVW 104
T +LQ + D VTS+A+ F +G ++G+ W
Sbjct: 328 TMKELQSFRGHTKD-----VTSLAWHPCHEEYFVSGSSDGSICHW 367
>AT2G43770.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr2:18134272-18135303 REVERSE LENGTH=343
Length = 343
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 70/179 (39%), Gaps = 27/179 (15%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFG-TGSDDGTCRLFDIR 60
VS S D T R WD + ++ H VN+ G +GSDDGT +L+D+R
Sbjct: 111 IVSASPDKTVRAWDVETG-KQIKKMAEHSSFVNSCCPTRRGPPLIISGSDDGTAKLWDMR 169
Query: 61 TGHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLAKVVLNLGSLQN 120
+Q + ++ +T+++FS + +F G + VWD + + L
Sbjct: 170 QRGAIQTFPDKY------QITAVSFSDAADKIFTGGVDNDVKVWDLRKGEATMTLE---- 219
Query: 121 SHDGRISCLGSVKFFGEQDHVLVLESQFSSSPMLTILTTKNLLSWDILALALVNHCIFI 179
G QD + + S +LT L WD+ A N C+ I
Sbjct: 220 ---------------GHQDTITGMSLSPDGSYLLTNGMDNKLCVWDMRPYAPQNRCVKI 263
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 54/106 (50%), Gaps = 9/106 (8%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
+ +SGS DGTA+LWD R A+QTF + + V F ++ TG D +++D+R
Sbjct: 153 LIISGSDDGTAKLWDMRQRG-AIQTF-PDKYQITAVSFSDAADKIFTGGVDNDVKVWDLR 210
Query: 61 TGHQLQVYYQQHSDNEIPHVTSMAFSISGR-LLFAGYTNGACYVWD 105
G + + + H D +T M+ S G LL G N C VWD
Sbjct: 211 KG-EATMTLEGHQDT----ITGMSLSPDGSYLLTNGMDNKLC-VWD 250
>AT2G41500.1 | Symbols: LIS, EMB2776 | WD-40 repeat family protein /
small nuclear ribonucleoprotein Prp4p-related |
chr2:17304319-17306855 REVERSE LENGTH=554
Length = 554
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/112 (34%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
+ S D TA+LW T +QTF GH + V F P G GT S D T RL+DI T
Sbjct: 313 LATASADRTAKLWKT--DGTLLQTFEGHLDRLARVAFHPSGKYLGTTSYDKTWRLWDINT 370
Query: 62 GHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLAKVVL 113
G +L + + HS + V +AF G L + + VWD + +L
Sbjct: 371 GAEL-LLQEGHSRS----VYGIAFQQDGALAASCGLDSLARVWDLRTGRSIL 417
Score = 48.1 bits (113), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 3 VSGSC--DGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
++ SC D AR+WD R R++ F GH V +V F P+G +G +D CR++D+R
Sbjct: 395 LAASCGLDSLARVWDLRTG-RSILVFQGHIKPVFSVNFSPNGYHLASGGEDNQCRIWDLR 453
Query: 61 TGHQLQV 67
L +
Sbjct: 454 MRKSLYI 460
>AT5G13480.1 | Symbols: FY | Transducin/WD40 repeat-like superfamily
protein | chr5:4326638-4331557 REVERSE LENGTH=647
Length = 647
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 56/105 (53%), Gaps = 7/105 (6%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
+ VSG D +LWDTR + R + + HGH+ V +VK+ +GN T S D +L+DIR
Sbjct: 263 LLVSGGKDQLVKLWDTR-SGRELCSLHGHKNIVLSVKWNQNGNWLLTASKDQIIKLYDIR 321
Query: 61 TGHQLQVYYQQHSDNEIPHVTSMAFSISGRLLF-AGYTNGACYVW 104
T +LQ + D VTS+A+ F +G ++G+ W
Sbjct: 322 TMKELQSFRGHTKD-----VTSLAWHPCHEEYFVSGSSDGSICHW 361
>AT5G52820.1 | Symbols: | WD-40 repeat family protein / notchless
protein, putative | chr5:21401423-21404203 FORWARD
LENGTH=473
Length = 473
Score = 53.5 bits (127), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 55/114 (48%), Gaps = 5/114 (4%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
VSGS D T LW+ V+ + + GH+ VN V F PDG + S D + RL++ T
Sbjct: 332 LVSGSDDFTMFLWEPSVSKQPKKRLTGHQQLVNHVYFSPDGKWIASASFDKSVRLWNGIT 391
Query: 62 GHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYVWDTLLAKVVLNL 115
G + V+ + V +++S RLL +G + +W+ K+ +L
Sbjct: 392 GQFVTVFR-----GHVGPVYQVSWSADSRLLLSGSKDSTLKIWEIRTKKLKQDL 440
>AT3G18140.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:6213225-6214567 REVERSE LENGTH=224
Length = 224
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 4 SGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 63
SGS DGT ++WD R Q + VNTV P+ +G +G R++D+R
Sbjct: 95 SGSEDGTVKIWDLRAP--GCQKEYESVAAVNTVVLHPNQTELISGDQNGNIRVWDLRAN- 151
Query: 64 QLQVYYQQHSDNEIPHVTSMAFSIS----GRLLFAGYTNGACYVWDTLLAKVVLN----L 115
S +P V + S++ G ++ A G CYVW L K + L
Sbjct: 152 -------SCSCELVPEVDTAVRSLTVMWDGTMVVAANNRGTCYVWRLLRGKQTMTEFEPL 204
Query: 116 GSLQNSHDGRI-SCLGS 131
LQ +H+G I CL S
Sbjct: 205 HKLQ-AHNGHILKCLLS 220
>AT3G18140.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr3:6212743-6214567 REVERSE LENGTH=305
Length = 305
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 60/137 (43%), Gaps = 20/137 (14%)
Query: 4 SGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGH 63
SGS DGT ++WD R Q + VNTV P+ +G +G R++D+R
Sbjct: 95 SGSEDGTVKIWDLRAP--GCQKEYESVAAVNTVVLHPNQTELISGDQNGNIRVWDLRAN- 151
Query: 64 QLQVYYQQHSDNEIPHVTSMAFSIS----GRLLFAGYTNGACYVWDTLLAKVVLN----L 115
S +P V + S++ G ++ A G CYVW L K + L
Sbjct: 152 -------SCSCELVPEVDTAVRSLTVMWDGTMVVAANNRGTCYVWRLLRGKQTMTEFEPL 204
Query: 116 GSLQNSHDGRI-SCLGS 131
LQ +H+G I CL S
Sbjct: 205 HKLQ-AHNGHILKCLLS 220
>AT2G22040.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr2:9374576-9376260 REVERSE LENGTH=313
Length = 313
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 60/139 (43%), Gaps = 18/139 (12%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
M SGS DG+ ++WD RV R Q VNTV P+ +G +G R++D+R
Sbjct: 98 MMYSGSEDGSVKIWDLRV--RECQREFRSVSPVNTVVLHPNQTELISGDQNGNIRVWDLR 155
Query: 61 TGHQLQVYYQQHSDNEIPHVTSMAFSIS----GRLLFAGYTNGACYVWDTLLAKVVLN-- 114
S +P V + S++ G ++ A G CYVW +L + +
Sbjct: 156 A--------DLCSCELVPEVGTPIRSLTVMWDGTMVVAANDRGTCYVWRSLCERQTMTEF 207
Query: 115 --LGSLQNSHDGRISCLGS 131
L LQ + + CL S
Sbjct: 208 EPLHKLQAHNSHILKCLLS 226
>AT1G52360.1 | Symbols: | Coatomer, beta' subunit |
chr1:19499282-19505397 FORWARD LENGTH=926
Length = 926
Score = 50.4 bits (119), Expect = 8e-07, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
++GS D TA++WD + S VQT GH +V+ V F P+ TGS+DGT R++ T
Sbjct: 202 LITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260
Query: 62 GHQLQVYYQQHSDNE-IPHVTSMAFSISGRLLFAGYTNGACYV 103
Y +++ N + V ++ + S R + GY G V
Sbjct: 261 ------YRLENTLNYGLERVWAIGYIKSSRRVVIGYDEGTIMV 297
>AT3G15980.4 | Symbols: | Coatomer, beta' subunit |
chr3:5411699-5418313 REVERSE LENGTH=914
Length = 914
Score = 50.1 bits (118), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
++GS D TA++WD + S VQT GH +V+ V F P+ TGS+DGT R++ T
Sbjct: 202 LITGSDDHTAKVWDYQTKS-CVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260
Query: 62 GHQLQVYYQQHSDNE-IPHVTSMAFSISGRLLFAGYTNGACYV 103
Y +++ N + V ++ + S R + GY G V
Sbjct: 261 ------YRLENTLNYGLERVWAIGYIKSSRRVVIGYDEGTIMV 297
>AT3G15980.1 | Symbols: | Coatomer, beta' subunit |
chr3:5411699-5418313 REVERSE LENGTH=909
Length = 909
Score = 50.1 bits (118), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
++GS D TA++WD + S VQT GH +V+ V F P+ TGS+DGT R++ T
Sbjct: 202 LITGSDDHTAKVWDYQTKS-CVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260
Query: 62 GHQLQVYYQQHSDNE-IPHVTSMAFSISGRLLFAGYTNGACYV 103
Y +++ N + V ++ + S R + GY G V
Sbjct: 261 ------YRLENTLNYGLERVWAIGYIKSSRRVVIGYDEGTIMV 297
>AT3G15980.3 | Symbols: | Coatomer, beta' subunit |
chr3:5412015-5418313 REVERSE LENGTH=918
Length = 918
Score = 50.1 bits (118), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
++GS D TA++WD + S VQT GH +V+ V F P+ TGS+DGT R++ T
Sbjct: 202 LITGSDDHTAKVWDYQTKS-CVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260
Query: 62 GHQLQVYYQQHSDNE-IPHVTSMAFSISGRLLFAGYTNGACYV 103
Y +++ N + V ++ + S R + GY G V
Sbjct: 261 ------YRLENTLNYGLERVWAIGYIKSSRRVVIGYDEGTIMV 297
>AT3G15980.2 | Symbols: | Coatomer, beta' subunit |
chr3:5412015-5418313 REVERSE LENGTH=918
Length = 918
Score = 50.1 bits (118), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
++GS D TA++WD + S VQT GH +V+ V F P+ TGS+DGT R++ T
Sbjct: 202 LITGSDDHTAKVWDYQTKS-CVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260
Query: 62 GHQLQVYYQQHSDNE-IPHVTSMAFSISGRLLFAGYTNGACYV 103
Y +++ N + V ++ + S R + GY G V
Sbjct: 261 ------YRLENTLNYGLERVWAIGYIKSSRRVVIGYDEGTIMV 297
>AT3G15980.5 | Symbols: | Coatomer, beta' subunit |
chr3:5412015-5418313 REVERSE LENGTH=930
Length = 930
Score = 49.7 bits (117), Expect = 1e-06, Method: Composition-based stats.
Identities = 34/103 (33%), Positives = 53/103 (51%), Gaps = 8/103 (7%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
++GS D TA++WD + S VQT GH +V+ V F P+ TGS+DGT R++ T
Sbjct: 202 LITGSDDHTAKVWDYQTKS-CVQTLDGHTHNVSAVCFHPELPIIITGSEDGTVRIWHATT 260
Query: 62 GHQLQVYYQQHSDNE-IPHVTSMAFSISGRLLFAGYTNGACYV 103
Y +++ N + V ++ + S R + GY G V
Sbjct: 261 ------YRLENTLNYGLERVWAIGYIKSSRRVVIGYDEGTIMV 297
>AT1G52360.2 | Symbols: | Coatomer, beta' subunit |
chr1:19499420-19505397 FORWARD LENGTH=970
Length = 970
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 50/102 (49%), Gaps = 6/102 (5%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRT 61
++GS D TA++WD + S VQT GH +V+ V F P+ TGS+DGT R++
Sbjct: 246 LITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVCFHPELPIIITGSEDGTVRIW---- 300
Query: 62 GHQLQVYYQQHSDNEIPHVTSMAFSISGRLLFAGYTNGACYV 103
H + + + V ++ + S R + GY G V
Sbjct: 301 -HATTYRLENTLNYGLERVWAIGYIKSSRRVVIGYDEGTIMV 341
>AT1G10580.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr1:3491560-3493665 REVERSE LENGTH=573
Length = 573
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 60/135 (44%), Gaps = 12/135 (8%)
Query: 1 MFVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIR 60
+ +S D ++WD + + ++T+ GH V + F DG++F T D + +D
Sbjct: 297 LLLSAGMDCKVKIWDVYNSGKCMRTYMGHAKAVRDICFSNDGSKFLTAGYDKNIKYWDTE 356
Query: 61 TGHQLQVYYQQHSDNEIPHVTSMAFSISGR-LLFAGYTNGACYVWDTLLAKVVLNLGSLQ 119
TG + + S +IP+V + + +L AG ++ WD +N G +
Sbjct: 357 TGQVISTF----STGKIPYVVKLNPDDDKQNILLAGMSDKKIVQWD-------INTGEVT 405
Query: 120 NSHDGRISCLGSVKF 134
+D + + ++ F
Sbjct: 406 QEYDQHLGAVNTITF 420
>AT2G05720.1 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr2:2147192-2148215 FORWARD LENGTH=276
Length = 276
Score = 48.1 bits (113), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 8 DGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLFDIRTGHQLQV 67
D AR+WD R A R + F GH V +V F P+G +G +D CR++D+R L +
Sbjct: 151 DSLARVWDLRTA-RNILIFQGHIKQVLSVDFSPNGYHLASGGEDNQCRIWDLRMRKLLYI 209
>AT1G79990.5 | Symbols: | structural molecules |
chr1:30085910-30091949 FORWARD LENGTH=912
Length = 912
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 57
++GS D TA++WD + S VQT GH +V+ V F P+ TGS+DGT R++
Sbjct: 202 LITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVSFHPELPIIITGSEDGTVRIW 256
>AT1G79990.3 | Symbols: | structural molecules |
chr1:30085910-30091949 FORWARD LENGTH=920
Length = 920
Score = 47.8 bits (112), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 57
++GS D TA++WD + S VQT GH +V+ V F P+ TGS+DGT R++
Sbjct: 202 LITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVSFHPELPIIITGSEDGTVRIW 256
>AT1G79990.1 | Symbols: | structural molecules |
chr1:30084522-30091949 FORWARD LENGTH=1135
Length = 1135
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 2 FVSGSCDGTARLWDTRVASRAVQTFHGHEGDVNTVKFFPDGNRFGTGSDDGTCRLF 57
++GS D TA++WD + S VQT GH +V+ V F P+ TGS+DGT R++
Sbjct: 417 LITGSDDHTAKVWDYQTKS-CVQTLEGHTHNVSAVSFHPELPIIITGSEDGTVRIW 471