Miyakogusa Predicted Gene

Lj0g3v0235139.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0235139.1 Non Chatacterized Hit- tr|I1K1N8|I1K1N8_SOYBN
Uncharacterized protein OS=Glycine max GN=Gma.49428 PE,44.55,1e-18,
,CUFF.15380.1
         (129 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G23590.1 | Symbols: RFR1, MED33A | REF4-related 1 | chr3:8467...    83   5e-17
AT2G48110.1 | Symbols: REF4, MED33B | reduced epidermal fluoresc...    79   9e-16

>AT3G23590.1 | Symbols: RFR1, MED33A | REF4-related 1 |
           chr3:8467638-8473469 FORWARD LENGTH=1309
          Length = 1309

 Score = 82.8 bits (203), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 39/109 (35%), Positives = 68/109 (62%)

Query: 12  EGVLRRAKQWQQRSEPPSAWVTELVEYLTGNGVALPSPELAELLVSQMCFEKDHPSMWKF 71
           + V+   K  Q+    P  W ++L   L    V LPS ELAE++VS +C++ + P +WKF
Sbjct: 11  DCVIELTKMAQENCVDPRLWASQLSSNLKFFAVELPSTELAEVIVSYICWDNNVPIVWKF 70

Query: 72  MSHALSSRLVFPLQILSLLSSKVIPRRRSHPHAYALFLPLLDQHVFSFQ 120
           +  A++ +LV PL +L+LL+ +V+P R +   AY ++L LL +++F+ +
Sbjct: 71  LERAMALKLVSPLVVLALLADRVVPTRSTQQAAYRIYLELLKRNMFTIK 119


>AT2G48110.1 | Symbols: REF4, MED33B | reduced epidermal
           fluorescence 4 | chr2:19673370-19679494 FORWARD
           LENGTH=1275
          Length = 1275

 Score = 78.6 bits (192), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 48/121 (39%), Positives = 72/121 (59%)

Query: 1   MESSEWNNQVEEGVLRRAKQWQQRSEPPSAWVTELVEYLTGNGVALPSPELAELLVSQMC 60
           M  SE+   + E V    +  Q+++  P  W  +L   L   G++LPSP+LA+ LV+ + 
Sbjct: 1   MAPSEFQPSLWESVTSLIRSAQEKNVDPLHWALQLRLTLASAGISLPSPDLAQFLVTHIF 60

Query: 61  FEKDHPSMWKFMSHALSSRLVFPLQILSLLSSKVIPRRRSHPHAYALFLPLLDQHVFSFQ 120
           +E   P  WK +  A+S  +V PL +L+LLS +VIP R+ HP AY L++ LL +H FSF 
Sbjct: 61  WENHSPLSWKLLEKAISVNIVPPLLVLALLSPRVIPNRKLHPAAYRLYMELLKRHAFSFM 120

Query: 121 P 121
           P
Sbjct: 121 P 121