Miyakogusa Predicted Gene

Lj0g3v0234959.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0234959.1 Non Chatacterized Hit- tr|I3SIC1|I3SIC1_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,93.65,0,Nucleic
acid-binding proteins,Nucleic acid-binding, OB-fold-like; eIF2alpha
middle domain-like,Trans,
gene.Ljchr0_pseudomol_20120828.path1.gene24152.1
         (123 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G40290.1 | Symbols:  | Eukaryotic translation initiation fact...   202   4e-53
AT2G40290.3 | Symbols:  | Eukaryotic translation initiation fact...   201   6e-53
AT2G40290.2 | Symbols:  | Eukaryotic translation initiation fact...   201   6e-53
AT5G05470.1 | Symbols: EIF2 ALPHA, ATEIF2-A2, EIF2-A2 | eukaryot...   184   9e-48

>AT2G40290.1 | Symbols:  | Eukaryotic translation initiation factor
           2 subunit 1 | chr2:16829030-16830889 REVERSE LENGTH=344
          Length = 344

 Score =  202 bits (514), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 102/117 (87%), Positives = 103/117 (88%)

Query: 1   MYETKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGR 60
           MYE KYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSE             KVGR
Sbjct: 12  MYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGR 71

Query: 61  IEPVMVLRVDKEKGYIDLSKRRVSEEDIQTCEERYNKSKLVHSIMRHVAETLNIDLE 117
           IEPVMVLRVDKEKGYIDLSKRRVSEEDIQTCEERYNKSKLVHSIMRHVAETL+IDLE
Sbjct: 72  IEPVMVLRVDKEKGYIDLSKRRVSEEDIQTCEERYNKSKLVHSIMRHVAETLSIDLE 128


>AT2G40290.3 | Symbols:  | Eukaryotic translation initiation factor
           2 subunit 1 | chr2:16829872-16830889 REVERSE LENGTH=241
          Length = 241

 Score =  201 bits (512), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 102/117 (87%), Positives = 103/117 (88%)

Query: 1   MYETKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGR 60
           MYE KYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSE             KVGR
Sbjct: 12  MYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGR 71

Query: 61  IEPVMVLRVDKEKGYIDLSKRRVSEEDIQTCEERYNKSKLVHSIMRHVAETLNIDLE 117
           IEPVMVLRVDKEKGYIDLSKRRVSEEDIQTCEERYNKSKLVHSIMRHVAETL+IDLE
Sbjct: 72  IEPVMVLRVDKEKGYIDLSKRRVSEEDIQTCEERYNKSKLVHSIMRHVAETLSIDLE 128


>AT2G40290.2 | Symbols:  | Eukaryotic translation initiation factor
           2 subunit 1 | chr2:16829872-16830889 REVERSE LENGTH=241
          Length = 241

 Score =  201 bits (512), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 102/117 (87%), Positives = 103/117 (88%)

Query: 1   MYETKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGR 60
           MYE KYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSE             KVGR
Sbjct: 12  MYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIKVGR 71

Query: 61  IEPVMVLRVDKEKGYIDLSKRRVSEEDIQTCEERYNKSKLVHSIMRHVAETLNIDLE 117
           IEPVMVLRVDKEKGYIDLSKRRVSEEDIQTCEERYNKSKLVHSIMRHVAETL+IDLE
Sbjct: 72  IEPVMVLRVDKEKGYIDLSKRRVSEEDIQTCEERYNKSKLVHSIMRHVAETLSIDLE 128


>AT5G05470.1 | Symbols: EIF2 ALPHA, ATEIF2-A2, EIF2-A2 | eukaryotic
           translation initiation factor 2 alpha subunit |
           chr5:1620579-1622214 FORWARD LENGTH=344
          Length = 344

 Score =  184 bits (468), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 90/117 (76%), Positives = 99/117 (84%)

Query: 1   MYETKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSEXXXXXXXXXXXXXKVGR 60
           MYE++YP+VDMAVMIQVK IADMGAYVSLLEYNNIEGMILFSE             KVGR
Sbjct: 12  MYESRYPDVDMAVMIQVKTIADMGAYVSLLEYNNIEGMILFSELSRRRIRSISSLIKVGR 71

Query: 61  IEPVMVLRVDKEKGYIDLSKRRVSEEDIQTCEERYNKSKLVHSIMRHVAETLNIDLE 117
            EPVMVLRVD+E+GYIDLSKRRVS+ED + CEERYNKSKLVHSIMRHVAET+ +DLE
Sbjct: 72  TEPVMVLRVDRERGYIDLSKRRVSDEDKEACEERYNKSKLVHSIMRHVAETVGVDLE 128