Miyakogusa Predicted Gene

Lj0g3v0234039.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0234039.1 Non Chatacterized Hit- tr|I3T494|I3T494_MEDTR
Uncharacterized protein OS=Medicago truncatula PE=4
SV,71.93,9e-17,seg,NULL; DNase-RNase,Bifunctional nuclease;
Hypothetical protein TM0160,Bifunctional nuclease,CUFF.15382.1
         (328 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G75380.3 | Symbols: ATBBD1, BBD1 | bifunctional nuclease in b...   442   e-124
AT1G75380.2 | Symbols: ATBBD1, BBD1 | bifunctional nuclease in b...   442   e-124
AT1G75380.1 | Symbols: ATBBD1, BBD1 | bifunctional nuclease in b...   442   e-124
AT1G19660.2 | Symbols:  | Wound-responsive family protein | chr1...   429   e-121
AT1G19660.1 | Symbols:  | Wound-responsive family protein | chr1...   429   e-121
AT5G66050.1 | Symbols:  | Wound-responsive family protein | chr5...   111   8e-25
AT5G66050.2 | Symbols:  | Wound-responsive family protein | chr5...   110   1e-24

>AT1G75380.3 | Symbols: ATBBD1, BBD1 | bifunctional nuclease in
           basal defense response 1 | chr1:28281789-28283631
           REVERSE LENGTH=325
          Length = 325

 Score =  442 bits (1137), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/331 (66%), Positives = 255/331 (77%), Gaps = 10/331 (3%)

Query: 1   MGSLKGPVVCLA---KVAGSCSVSMPMIGSMNSRTEFWXXXXXXXXXXXXXXXXXHVNMR 57
           M S++ PVVC A   +  G+C+  +   G +  R++FW                  + +R
Sbjct: 1   MRSVQAPVVCPAIRPRQVGACASLVNYTG-LKPRSQFWGNRTKGVKSQGTTTT---ITLR 56

Query: 58  RC-MTVHCXXXXXXXXXXXMAENFNQNDEDYVNSSIVEAVEVKSGADGFLIKMRDGRHVR 116
            C  ++ C            AENFN+NDE+YVNSS+VEAVEVKSGADGF++KMRDGR +R
Sbjct: 57  LCNKSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMRDGRQLR 116

Query: 117 CIHNNPQGGLLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTLYQ 176
           C+HNNPQGG LPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+ NVQIARPT+YQ
Sbjct: 117 CVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIARPTMYQ 176

Query: 177 VVKEMIDKMGYQVRAVRVTKRVHEAYFAQIYLSKVGNEEECVSFDLRPSDAINIAVRCKV 236
           VVKEM+DKMGY+VR VRVTKRVHEAYFAQ++LSKVGN  ECVSFDLRPSDAINIAVRCK+
Sbjct: 177 VVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIAVRCKI 236

Query: 237 PIQVNKYLAYSDGMRVIESGKLSTQSPGSDGPLFTELDRPSNKPCTETKEFNLLENMMKA 296
           PIQVNKYLAYSDGMRVIESGK+ST +P SDG LFTE DRP+ + C +TKEFN+L  MM+A
Sbjct: 237 PIQVNKYLAYSDGMRVIESGKISTPAPASDGLLFTEQDRPNGQACLDTKEFNILSKMMQA 296

Query: 297 VGEERYQDAALWRDKLNQLRAGKKANNRSWT 327
           V EERY +AA WRDKL Q RA  K N R +T
Sbjct: 297 VDEERYDEAAEWRDKLGQFRA--KRNLRKYT 325


>AT1G75380.2 | Symbols: ATBBD1, BBD1 | bifunctional nuclease in
           basal defense response 1 | chr1:28281789-28283631
           REVERSE LENGTH=325
          Length = 325

 Score =  442 bits (1137), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/331 (66%), Positives = 255/331 (77%), Gaps = 10/331 (3%)

Query: 1   MGSLKGPVVCLA---KVAGSCSVSMPMIGSMNSRTEFWXXXXXXXXXXXXXXXXXHVNMR 57
           M S++ PVVC A   +  G+C+  +   G +  R++FW                  + +R
Sbjct: 1   MRSVQAPVVCPAIRPRQVGACASLVNYTG-LKPRSQFWGNRTKGVKSQGTTTT---ITLR 56

Query: 58  RC-MTVHCXXXXXXXXXXXMAENFNQNDEDYVNSSIVEAVEVKSGADGFLIKMRDGRHVR 116
            C  ++ C            AENFN+NDE+YVNSS+VEAVEVKSGADGF++KMRDGR +R
Sbjct: 57  LCNKSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMRDGRQLR 116

Query: 117 CIHNNPQGGLLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTLYQ 176
           C+HNNPQGG LPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+ NVQIARPT+YQ
Sbjct: 117 CVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIARPTMYQ 176

Query: 177 VVKEMIDKMGYQVRAVRVTKRVHEAYFAQIYLSKVGNEEECVSFDLRPSDAINIAVRCKV 236
           VVKEM+DKMGY+VR VRVTKRVHEAYFAQ++LSKVGN  ECVSFDLRPSDAINIAVRCK+
Sbjct: 177 VVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIAVRCKI 236

Query: 237 PIQVNKYLAYSDGMRVIESGKLSTQSPGSDGPLFTELDRPSNKPCTETKEFNLLENMMKA 296
           PIQVNKYLAYSDGMRVIESGK+ST +P SDG LFTE DRP+ + C +TKEFN+L  MM+A
Sbjct: 237 PIQVNKYLAYSDGMRVIESGKISTPAPASDGLLFTEQDRPNGQACLDTKEFNILSKMMQA 296

Query: 297 VGEERYQDAALWRDKLNQLRAGKKANNRSWT 327
           V EERY +AA WRDKL Q RA  K N R +T
Sbjct: 297 VDEERYDEAAEWRDKLGQFRA--KRNLRKYT 325


>AT1G75380.1 | Symbols: ATBBD1, BBD1 | bifunctional nuclease in
           basal defense response 1 | chr1:28281789-28283631
           REVERSE LENGTH=325
          Length = 325

 Score =  442 bits (1137), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 219/331 (66%), Positives = 255/331 (77%), Gaps = 10/331 (3%)

Query: 1   MGSLKGPVVCLA---KVAGSCSVSMPMIGSMNSRTEFWXXXXXXXXXXXXXXXXXHVNMR 57
           M S++ PVVC A   +  G+C+  +   G +  R++FW                  + +R
Sbjct: 1   MRSVQAPVVCPAIRPRQVGACASLVNYTG-LKPRSQFWGNRTKGVKSQGTTTT---ITLR 56

Query: 58  RC-MTVHCXXXXXXXXXXXMAENFNQNDEDYVNSSIVEAVEVKSGADGFLIKMRDGRHVR 116
            C  ++ C            AENFN+NDE+YVNSS+VEAVEVKSGADGF++KMRDGR +R
Sbjct: 57  LCNKSIKCVFSSHSDGNGSTAENFNENDEEYVNSSVVEAVEVKSGADGFMVKMRDGRQLR 116

Query: 117 CIHNNPQGGLLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIARPTLYQ 176
           C+HNNPQGG LPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAA+ NVQIARPT+YQ
Sbjct: 117 CVHNNPQGGHLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIARPTMYQ 176

Query: 177 VVKEMIDKMGYQVRAVRVTKRVHEAYFAQIYLSKVGNEEECVSFDLRPSDAINIAVRCKV 236
           VVKEM+DKMGY+VR VRVTKRVHEAYFAQ++LSKVGN  ECVSFDLRPSDAINIAVRCK+
Sbjct: 177 VVKEMVDKMGYEVRLVRVTKRVHEAYFAQLFLSKVGNASECVSFDLRPSDAINIAVRCKI 236

Query: 237 PIQVNKYLAYSDGMRVIESGKLSTQSPGSDGPLFTELDRPSNKPCTETKEFNLLENMMKA 296
           PIQVNKYLAYSDGMRVIESGK+ST +P SDG LFTE DRP+ + C +TKEFN+L  MM+A
Sbjct: 237 PIQVNKYLAYSDGMRVIESGKISTPAPASDGLLFTEQDRPNGQACLDTKEFNILSKMMQA 296

Query: 297 VGEERYQDAALWRDKLNQLRAGKKANNRSWT 327
           V EERY +AA WRDKL Q RA  K N R +T
Sbjct: 297 VDEERYDEAAEWRDKLGQFRA--KRNLRKYT 325


>AT1G19660.2 | Symbols:  | Wound-responsive family protein |
           chr1:6800361-6802240 REVERSE LENGTH=329
          Length = 329

 Score =  429 bits (1104), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/329 (63%), Positives = 253/329 (76%), Gaps = 14/329 (4%)

Query: 1   MGSLKGPVVC---------LAKVAGSCSVSMPMIGSMNSRTEFWXXXXXXXXXXXXXXXX 51
           M SL+ PVVC         ++ +  +CSVS     + + R +FW                
Sbjct: 1   MRSLQAPVVCPSVRPRQLGVSALLVNCSVS----KTRSLRKQFWGNQTKNDKSQAATVNL 56

Query: 52  XHVNMRRCMTVHCXXXXXXXXXXXMAENFNQNDEDYVNSSIVEAVEVKSGADGFLIKMRD 111
             +++RR  ++ C            AENFN+NDEDYV SS++EAVEVKSG DGF++KM+D
Sbjct: 57  -RLHLRRYKSIKCLFSSHSDGTGSTAENFNENDEDYVKSSVLEAVEVKSGPDGFMVKMKD 115

Query: 112 GRHVRCIHNNPQGGLLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIAR 171
           GR +RC+HNNPQGG LP+YAPH AIVLKMEDGTGLLLPIIVLEMPSVLLMAA+ NVQIAR
Sbjct: 116 GRQLRCVHNNPQGGNLPNYAPHSAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIAR 175

Query: 172 PTLYQVVKEMIDKMGYQVRAVRVTKRVHEAYFAQIYLSKVGNEEECVSFDLRPSDAINIA 231
           PT+YQVVK+M+DKMGY+VR VRVT RVHEAYFA++YLSKVG++ +CVSFDLRPSDAINIA
Sbjct: 176 PTMYQVVKDMVDKMGYEVRLVRVTTRVHEAYFAELYLSKVGDKSDCVSFDLRPSDAINIA 235

Query: 232 VRCKVPIQVNKYLAYSDGMRVIESGKLSTQSPGSDGPLFTELDRPSNKPCTETKEFNLLE 291
           VRCKVPIQVNKYLAYSDGMRVI+SGKLS Q+P SDG LFTELDRP+ +PC +TKEF+L+ 
Sbjct: 236 VRCKVPIQVNKYLAYSDGMRVIDSGKLSKQTPASDGLLFTELDRPNGQPCFDTKEFDLVR 295

Query: 292 NMMKAVGEERYQDAALWRDKLNQLRAGKK 320
           NMM+AV EERY +AA WRDKL + +A +K
Sbjct: 296 NMMQAVDEERYDEAAEWRDKLGKFQAKRK 324


>AT1G19660.1 | Symbols:  | Wound-responsive family protein |
           chr1:6800361-6802240 REVERSE LENGTH=329
          Length = 329

 Score =  429 bits (1104), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 209/329 (63%), Positives = 253/329 (76%), Gaps = 14/329 (4%)

Query: 1   MGSLKGPVVC---------LAKVAGSCSVSMPMIGSMNSRTEFWXXXXXXXXXXXXXXXX 51
           M SL+ PVVC         ++ +  +CSVS     + + R +FW                
Sbjct: 1   MRSLQAPVVCPSVRPRQLGVSALLVNCSVS----KTRSLRKQFWGNQTKNDKSQAATVNL 56

Query: 52  XHVNMRRCMTVHCXXXXXXXXXXXMAENFNQNDEDYVNSSIVEAVEVKSGADGFLIKMRD 111
             +++RR  ++ C            AENFN+NDEDYV SS++EAVEVKSG DGF++KM+D
Sbjct: 57  -RLHLRRYKSIKCLFSSHSDGTGSTAENFNENDEDYVKSSVLEAVEVKSGPDGFMVKMKD 115

Query: 112 GRHVRCIHNNPQGGLLPDYAPHPAIVLKMEDGTGLLLPIIVLEMPSVLLMAAVRNVQIAR 171
           GR +RC+HNNPQGG LP+YAPH AIVLKMEDGTGLLLPIIVLEMPSVLLMAA+ NVQIAR
Sbjct: 116 GRQLRCVHNNPQGGNLPNYAPHSAIVLKMEDGTGLLLPIIVLEMPSVLLMAAMTNVQIAR 175

Query: 172 PTLYQVVKEMIDKMGYQVRAVRVTKRVHEAYFAQIYLSKVGNEEECVSFDLRPSDAINIA 231
           PT+YQVVK+M+DKMGY+VR VRVT RVHEAYFA++YLSKVG++ +CVSFDLRPSDAINIA
Sbjct: 176 PTMYQVVKDMVDKMGYEVRLVRVTTRVHEAYFAELYLSKVGDKSDCVSFDLRPSDAINIA 235

Query: 232 VRCKVPIQVNKYLAYSDGMRVIESGKLSTQSPGSDGPLFTELDRPSNKPCTETKEFNLLE 291
           VRCKVPIQVNKYLAYSDGMRVI+SGKLS Q+P SDG LFTELDRP+ +PC +TKEF+L+ 
Sbjct: 236 VRCKVPIQVNKYLAYSDGMRVIDSGKLSKQTPASDGLLFTELDRPNGQPCFDTKEFDLVR 295

Query: 292 NMMKAVGEERYQDAALWRDKLNQLRAGKK 320
           NMM+AV EERY +AA WRDKL + +A +K
Sbjct: 296 NMMQAVDEERYDEAAEWRDKLGKFQAKRK 324


>AT5G66050.1 | Symbols:  | Wound-responsive family protein |
           chr5:26412333-26414428 REVERSE LENGTH=340
          Length = 340

 Score =  111 bits (277), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 102/186 (54%), Gaps = 8/186 (4%)

Query: 133 HPAIVLKMEDGTGLLLPIIVLEMP-SVLLMAAVRNVQIARPTLYQVVKEMIDKMGYQVRA 191
            P I LK+      LLP+IV +     LL   ++      P  +Q V  ++DK+GY+V+ 
Sbjct: 143 QPTIFLKISCDGDYLLPVIVGDAAVEKLLDVPLQGHTEECPDQFQFVSAVVDKLGYEVKM 202

Query: 192 VRVTKRVHEAYFAQIYLSKVGNEEECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMR 251
           V++T R+   Y+A + L K G+ E  +  D RPSDAIN+A  C+ PI VNK +   + ++
Sbjct: 203 VKLTGRIVNTYYASLCLGKPGDIE-AICIDSRPSDAINVARACQAPIYVNKAIVLEEAIK 261

Query: 252 VIESGKLSTQSPGSDGPLFTE-LDRPSNKPCTETKEFNLLENMMKAVGEERYQDAALWRD 310
           +   G+     P S  P+F   LD   + P   ++E  L+ NM  A  EERY DAA+WRD
Sbjct: 262 IGYGGR-----PQSAKPVFNVILDSAPDGPDPLSEELKLVRNMDLASKEERYIDAAMWRD 316

Query: 311 KLNQLR 316
           +L  L+
Sbjct: 317 RLKNLQ 322


>AT5G66050.2 | Symbols:  | Wound-responsive family protein |
           chr5:26412333-26413830 REVERSE LENGTH=246
          Length = 246

 Score =  110 bits (275), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 68/186 (36%), Positives = 102/186 (54%), Gaps = 8/186 (4%)

Query: 133 HPAIVLKMEDGTGLLLPIIVLEMP-SVLLMAAVRNVQIARPTLYQVVKEMIDKMGYQVRA 191
            P I LK+      LLP+IV +     LL   ++      P  +Q V  ++DK+GY+V+ 
Sbjct: 49  QPTIFLKISCDGDYLLPVIVGDAAVEKLLDVPLQGHTEECPDQFQFVSAVVDKLGYEVKM 108

Query: 192 VRVTKRVHEAYFAQIYLSKVGNEEECVSFDLRPSDAINIAVRCKVPIQVNKYLAYSDGMR 251
           V++T R+   Y+A + L K G+ E  +  D RPSDAIN+A  C+ PI VNK +   + ++
Sbjct: 109 VKLTGRIVNTYYASLCLGKPGDIE-AICIDSRPSDAINVARACQAPIYVNKAIVLEEAIK 167

Query: 252 VIESGKLSTQSPGSDGPLFTE-LDRPSNKPCTETKEFNLLENMMKAVGEERYQDAALWRD 310
           +   G+     P S  P+F   LD   + P   ++E  L+ NM  A  EERY DAA+WRD
Sbjct: 168 IGYGGR-----PQSAKPVFNVILDSAPDGPDPLSEELKLVRNMDLASKEERYIDAAMWRD 222

Query: 311 KLNQLR 316
           +L  L+
Sbjct: 223 RLKNLQ 228