Miyakogusa Predicted Gene

Lj0g3v0233849.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0233849.1 Non Chatacterized Hit- tr|D8SV13|D8SV13_SELML
Putative uncharacterized protein OS=Selaginella
moelle,48.6,5e-19,seg,NULL; ATP-DEPENDENT TRANSPORTER (ABCF1)
PLANT,NULL; ATP-BINDING TRANSPORT PROTEIN-RELATED,NULL,CUFF.15302.1
         (132 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G64550.1 | Symbols: ATGCN3, GCN3 | general control non-repres...   166   5e-42

>AT1G64550.1 | Symbols: ATGCN3, GCN3 | general control
           non-repressible 3 | chr1:23968850-23973369 FORWARD
           LENGTH=715
          Length = 715

 Score =  166 bits (419), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 85/132 (64%), Positives = 93/132 (70%)

Query: 1   MTEVARSVVHEVFGENIVDVDEPIVDYIVNVXXXXXXXXXXXXXXXXXXLGELLVAAGCV 60
           MTEVA SVV+EV G    DVDEPI+DYI+NV                  +GELLVAA CV
Sbjct: 1   MTEVASSVVYEVLGRRAQDVDEPIMDYIINVLADEDFDFGEEGEGAFDAVGELLVAAECV 60

Query: 61  PDFPDCRTACSKLSDKFGKHGLVKEKPTVRSLTTPFRMNEGLDDGVAPKKKPEPVDGPLL 120
            DF +CR  CSKLSDKFGKHGLVK  PTVRSL  P RMN+G+DDG   KKKPEPVDGPLL
Sbjct: 61  SDFEECRLVCSKLSDKFGKHGLVKPTPTVRSLAMPVRMNDGMDDGPVKKKKPEPVDGPLL 120

Query: 121 TERDKLKLERRK 132
           TERD  K+ERRK
Sbjct: 121 TERDLAKIERRK 132