Miyakogusa Predicted Gene

Lj0g3v0233739.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0233739.1 Non Chatacterized Hit- tr|Q93X02|Q93X02_LOTJA
Putative ammonium transporter AMT2 OS=Lotus japonicus
,100,0,AMMONIUM_TRANSP,Ammonium transporter, conserved site; no
description,Ammonium transporter AmtB-like;,CUFF.15279.1
         (94 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G38290.2 | Symbols: ATAMT2, AMT2;1, AMT2 | ammonium transport...   166   2e-42
AT2G38290.1 | Symbols: ATAMT2, AMT2;1, AMT2 | ammonium transport...   166   3e-42

>AT2G38290.2 | Symbols: ATAMT2, AMT2;1, AMT2 | ammonium transporter
           2 | chr2:16039672-16041864 REVERSE LENGTH=359
          Length = 359

 Score =  166 bits (421), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 78/86 (90%), Positives = 83/86 (96%)

Query: 2   ILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSIWGGGFLYHWGVIDFSGGYVIHLSSG 61
           IL+AGSVLGRMNIKAWMAFVPLWLIFSYTVGA+SIWGGGFLY WGVID+SGGYVIHLSSG
Sbjct: 17  ILVAGSVLGRMNIKAWMAFVPLWLIFSYTVGAYSIWGGGFLYQWGVIDYSGGYVIHLSSG 76

Query: 62  IAGFTAAYWVGPRLKSDRERFPPNNV 87
           +AGF AAYWVGPR K+DRERFPPNNV
Sbjct: 77  VAGFVAAYWVGPRPKADRERFPPNNV 102


>AT2G38290.1 | Symbols: ATAMT2, AMT2;1, AMT2 | ammonium transporter
           2 | chr2:16039672-16042291 REVERSE LENGTH=475
          Length = 475

 Score =  166 bits (420), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 78/86 (90%), Positives = 83/86 (96%)

Query: 2   ILLAGSVLGRMNIKAWMAFVPLWLIFSYTVGAFSIWGGGFLYHWGVIDFSGGYVIHLSSG 61
           IL+AGSVLGRMNIKAWMAFVPLWLIFSYTVGA+SIWGGGFLY WGVID+SGGYVIHLSSG
Sbjct: 133 ILVAGSVLGRMNIKAWMAFVPLWLIFSYTVGAYSIWGGGFLYQWGVIDYSGGYVIHLSSG 192

Query: 62  IAGFTAAYWVGPRLKSDRERFPPNNV 87
           +AGF AAYWVGPR K+DRERFPPNNV
Sbjct: 193 VAGFVAAYWVGPRPKADRERFPPNNV 218