Miyakogusa Predicted Gene

Lj0g3v0233579.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0233579.1 tr|G4HLS2|G4HLS2_9BACL Ribosome biogenesis GTPase
A OS=Paenibacillus lactis 154 GN=PaelaDRAFT_4933
P,42.2,6e-18,GTP-BINDING PROTEIN-RELATED,NULL; P-loop containing
nucleoside triphosphate hydrolases,NULL; no desc,CUFF.15273.1
         (134 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G41670.1 | Symbols:  | P-loop containing nucleoside triphosph...   150   3e-37
AT4G10650.1 | Symbols:  | P-loop containing nucleoside triphosph...    71   2e-13
AT4G02790.1 | Symbols:  | GTP-binding family protein | chr4:1247...    69   9e-13

>AT2G41670.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr2:17374118-17376177
           FORWARD LENGTH=386
          Length = 386

 Score =  150 bits (378), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 71/99 (71%), Positives = 82/99 (82%)

Query: 17  MAFNTGGGAITWSPGHMPAATRAILSRLKLSDLVIEVRDARIPLSSANANLQPHLSSKRR 76
           M+F    G I W PGHM AATRAI +RLKLSDLVIEVRDARIPLSSAN +LQ  +S+KRR
Sbjct: 17  MSFAKDAGKINWFPGHMAAATRAIRNRLKLSDLVIEVRDARIPLSSANEDLQSQMSAKRR 76

Query: 77  VIALNKKDLANPNIMHKWTSYFDSCKQVCFPINAHSRSS 115
           +IALNKKDLANPN+++KWT +F+S KQ C  INAHSRSS
Sbjct: 77  IIALNKKDLANPNVLNKWTRHFESSKQDCIAINAHSRSS 115


>AT4G10650.1 | Symbols:  | P-loop containing nucleoside triphosphate
           hydrolases superfamily protein | chr4:6574472-6576231
           REVERSE LENGTH=377
          Length = 377

 Score = 70.9 bits (172), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/88 (44%), Positives = 54/88 (61%), Gaps = 3/88 (3%)

Query: 28  WSPGHMPAATRAILSRLKLSDLVIEVRDARIPLSSANANLQPH--LSSKRRVIALNKKDL 85
           W   HM AA RAI  R+ L D V+E+RDARIPLSS    L+    L SK R+I LNK +L
Sbjct: 28  WYGPHMAAAVRAISERIPLVDFVLEIRDARIPLSSEYELLRKFSPLPSK-RIIVLNKMEL 86

Query: 86  ANPNIMHKWTSYFDSCKQVCFPINAHSR 113
           A+P  + K   YF+    + + +N+H++
Sbjct: 87  ADPLELKKCIDYFEERNYLSYAVNSHNK 114


>AT4G02790.1 | Symbols:  | GTP-binding family protein |
           chr4:1247416-1249351 FORWARD LENGTH=372
          Length = 372

 Score = 68.9 bits (167), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 28/73 (38%), Positives = 48/73 (65%)

Query: 26  ITWSPGHMPAATRAILSRLKLSDLVIEVRDARIPLSSANANLQPHLSSKRRVIALNKKDL 85
           + W PGH+    + +  +LKL D+VIEVRDARIPLS+ +  +   L +++R++ LN++D+
Sbjct: 96  VQWYPGHIMKTEKELREQLKLMDVVIEVRDARIPLSTTHPKMDAWLGNRKRILVLNREDM 155

Query: 86  ANPNIMHKWTSYF 98
            + +  + W  YF
Sbjct: 156 ISNDDRNDWARYF 168