Miyakogusa Predicted Gene

Lj0g3v0233439.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0233439.1 tr|G7K7Q6|G7K7Q6_MEDTR Oligoribonuclease
OS=Medicago truncatula GN=MTR_5g088330 PE=4
SV=1,80.42,0,OLIGORIBONUCLEASE, MITOCHONDRIAL,NULL;
RNase_T,Exonuclease, RNase T/DNA polymerase III; no
descripti,CUFF.20834.1
         (235 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G26970.1 | Symbols:  | Polynucleotidyl transferase, ribonucle...   316   8e-87
AT2G26970.2 | Symbols:  | Polynucleotidyl transferase, ribonucle...   312   1e-85

>AT2G26970.1 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr2:11509908-11511903
           REVERSE LENGTH=222
          Length = 222

 Score =  316 bits (810), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 151/235 (64%), Positives = 187/235 (79%), Gaps = 17/235 (7%)

Query: 1   MENLANSFSVLELDADDSDVQPLPTSGTTGKK---VNGKADTPLVNTDKQDPENPYKLPL 57
           M  L+N+FSVL    +D+   P+ +S +TGK+   VNG  +           +  YK PL
Sbjct: 1   MNKLSNAFSVLAFADEDA---PMASSSSTGKQEESVNGSLE-----------DGDYKQPL 46

Query: 58  VWIDLEMTGLNIEVDRILEIACIITDGNLTKSVEGPDLVIHQTKECLDRMGEWCQSHHAA 117
           VWIDLEMTGLN+EVDRILEIACIIT+G+LT+SVEGPDLV+ QTK+CLD+M +WCQ+HH A
Sbjct: 47  VWIDLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDCLDKMDDWCQTHHGA 106

Query: 118 SGLTKRVLESTISEREAEKQVIDFVKKHVGKYTPLLAGNSIYVDLQYLKKYMPELAGLFP 177
           SGLTK+VL S I+EREAE++VI+FVKKHVG   PLLAGNS+YVD  +LKKYMPELA LFP
Sbjct: 107 SGLTKKVLLSAITEREAEQKVIEFVKKHVGSGNPLLAGNSVYVDFLFLKKYMPELAALFP 166

Query: 178 HVLVDVSSVKALCIRWYPRDQKKAPIKENKHRALDDIRESIEELRYYKANIFKPK 232
           H+LVDVSSVKALC RW+P +++KAP K+N HRA+DDIRESI+EL+YYK  IFK +
Sbjct: 167 HILVDVSSVKALCARWFPIERRKAPAKKNNHRAMDDIRESIKELKYYKKTIFKAR 221


>AT2G26970.2 | Symbols:  | Polynucleotidyl transferase, ribonuclease
           H-like superfamily protein | chr2:11509908-11511903
           REVERSE LENGTH=218
          Length = 218

 Score =  312 bits (799), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 149/232 (64%), Positives = 185/232 (79%), Gaps = 15/232 (6%)

Query: 1   MENLANSFSVLELDADDSDVQPLPTSGTTGKKVNGKADTPLVNTDKQDPENPYKLPLVWI 60
           M  L+N+FSVL    +D+   P+ +S +T + VNG  +           +  YK PLVWI
Sbjct: 1   MNKLSNAFSVLAFADEDA---PMASSSST-ESVNGSLE-----------DGDYKQPLVWI 45

Query: 61  DLEMTGLNIEVDRILEIACIITDGNLTKSVEGPDLVIHQTKECLDRMGEWCQSHHAASGL 120
           DLEMTGLN+EVDRILEIACIIT+G+LT+SVEGPDLV+ QTK+CLD+M +WCQ+HH ASGL
Sbjct: 46  DLEMTGLNVEVDRILEIACIITNGDLTQSVEGPDLVVRQTKDCLDKMDDWCQTHHGASGL 105

Query: 121 TKRVLESTISEREAEKQVIDFVKKHVGKYTPLLAGNSIYVDLQYLKKYMPELAGLFPHVL 180
           TK+VL S I+EREAE++VI+FVKKHVG   PLLAGNS+YVD  +LKKYMPELA LFPH+L
Sbjct: 106 TKKVLLSAITEREAEQKVIEFVKKHVGSGNPLLAGNSVYVDFLFLKKYMPELAALFPHIL 165

Query: 181 VDVSSVKALCIRWYPRDQKKAPIKENKHRALDDIRESIEELRYYKANIFKPK 232
           VDVSSVKALC RW+P +++KAP K+N HRA+DDIRESI+EL+YYK  IFK +
Sbjct: 166 VDVSSVKALCARWFPIERRKAPAKKNNHRAMDDIRESIKELKYYKKTIFKAR 217