Miyakogusa Predicted Gene

Lj0g3v0232319.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0232319.1 Non Chatacterized Hit- tr|G8A099|G8A099_MEDTR
Putative uncharacterized protein OS=Medicago truncatul,79.47,0,no
description,ATPase-like, ATP-binding domain; ATPase domain of HSP90
chaperone/DNA topoisomerase I,CUFF.15232.1
         (601 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G48770.1 | Symbols:  | DNA binding;ATP binding | chr3:1807926...   796   0.0  
AT3G28020.1 | Symbols:  | BEST Arabidopsis thaliana protein matc...   175   7e-44
AT4G13750.1 | Symbols: NOV | Histidine kinase-, DNA gyrase B-, a...   153   3e-37

>AT3G48770.1 | Symbols:  | DNA binding;ATP binding |
           chr3:18079261-18086817 REVERSE LENGTH=1899
          Length = 1899

 Score =  796 bits (2055), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 392/603 (65%), Positives = 477/603 (79%), Gaps = 9/603 (1%)

Query: 1   MAATPKEHVEEIRSNKFSIGGKPNPLTEDLHQAVKNLSAELYAKDVHFLMELIQNAEDNQ 60
           M  + K+H+E IR  KFSIGG  NPLTEDLHQAVKNLSAELYAKDVHFLMELIQNAEDN+
Sbjct: 192 MTESAKQHIERIRRTKFSIGGAENPLTEDLHQAVKNLSAELYAKDVHFLMELIQNAEDNE 251

Query: 61  YPEGVSPALEFIITSEDITDSGAPATLLIFNNEKGFSPRNIESVCSVGRSTKKDSRSSGY 120
           YPEGV P+LEF+ITSEDIT++GAPATLLIFNNEKGFS +NIES+CSVGRSTKK +R  GY
Sbjct: 252 YPEGVDPSLEFVITSEDITNTGAPATLLIFNNEKGFSEKNIESICSVGRSTKKGNRKCGY 311

Query: 121 IGEKGIGFKSVFLVTAQPYIFSNGYQIRFNEKPCPHCCLGYVVPEWVEEKPTLQDIRQIY 180
           IGEKGIGFKSVFL+T+QPYIFSNGYQIRFNE PC HC LGY+VPEWV++ P+L DI+++Y
Sbjct: 312 IGEKGIGFKSVFLITSQPYIFSNGYQIRFNEAPCSHCSLGYIVPEWVDQHPSLVDIQRMY 371

Query: 181 GKDS-LPTTTIVLPLKSDKVNAVKQQLSSIHPEVLLFLSKIRQLSVREHNKNPKLNTVAA 239
           G  S LPTTTI+LPLKSDKV  VK+QLS++HPEVLLFLSKI++LS+REH  +PKL+TV +
Sbjct: 372 GSGSALPTTTIILPLKSDKVKPVKEQLSNVHPEVLLFLSKIKRLSIREHCLDPKLSTVNS 431

Query: 240 VSISSEINFMTRKNMNAESYTLHLSA-EESSNSGKECSYYMWKKKFPVRVENVVERRTGV 298
           + I SE NF+TRK+++AESYT+HLSA E+  NS +ECSYYMW++KFPV+ EN V+RR+ V
Sbjct: 432 IGIVSETNFVTRKSIDAESYTIHLSASEKGKNSEQECSYYMWRQKFPVKHENRVDRRSEV 491

Query: 299 EEWVITLAFPNQERLHRGLSSPGVYAFLPTEMATNFPFIIQADFVLASSRETILMDDKWN 358
           EEWVITLAFP  ERL  G +SPG+YAFLPTEM TNFPFIIQADF+LASSRE IL+DD WN
Sbjct: 492 EEWVITLAFPFGERLGHGNNSPGIYAFLPTEMVTNFPFIIQADFILASSREMILLDDIWN 551

Query: 359 QGILECIPTAFMDAFKTLVIGSDEAPVSSLTQMFRFLPIESSPYEKLNHVRDQIKAKLLE 418
           QGIL C+P AF++AF +LV  +D APVSSL   FRFLP++ S Y KLN VR+ I+A++  
Sbjct: 552 QGILNCVPLAFLNAFTSLVKTTD-APVSSLLPAFRFLPVKESNYAKLNVVRESIRARVCA 610

Query: 419 EAIVPIETYTKQKHFYKPREVGRLLPEFWNILSKARSEQVYLLDLSSHDGRKILSSAFDR 478
           E IVP  ++  QK FYKP EVGRL+P FW+IL KA SE   L ++SSH G  IL+SAFDR
Sbjct: 611 EEIVPSISHQGQKFFYKPCEVGRLIPTFWDILEKAGSEGASLQNISSH-GIYILNSAFDR 669

Query: 479 SVYDRILNFLEVKPVNVDWYAKCIQSSNLVDGVSEEVYLELLLFVTENWLTMFKDSKMAR 538
           + YD +LNFL +K V+ +WY KCIQ  +LV  VSE  Y+E+LLF+ ENW   F+++ M +
Sbjct: 670 TEYDNVLNFLGLKQVSNEWYVKCIQGCDLVTSVSEATYVEVLLFIAENWQCRFQNTNMGK 729

Query: 539 VPLIKYVGPDGSLSHFSFYDCTQGSKQVVLADSSESCPCSWLIDWNKEFACSSNKFFMPE 598
           VPLIKYV   G  S  S        + + L+        +WL+DWN EF C SN  FMP 
Sbjct: 730 VPLIKYVVQKGVSSLSSLG--GFSPRTLCLSTEKNQ---AWLLDWNDEFRCMSNFVFMPP 784

Query: 599 STQ 601
           +T+
Sbjct: 785 TTR 787


>AT3G28020.1 | Symbols:  | BEST Arabidopsis thaliana protein match
           is: DNA binding;ATP binding (TAIR:AT3G48770.1); Has 66
           Blast hits to 55 proteins in 9 species: Archae - 0;
           Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 66;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr3:10417906-10419149 REVERSE LENGTH=246
          Length = 246

 Score =  175 bits (444), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 110/270 (40%), Positives = 155/270 (57%), Gaps = 64/270 (23%)

Query: 156 HCCLGYVVPEWVEEKPTLQDIRQIYG-KDSLPTTTIVLPLKSDKVNAVKQQLSSIHPEVL 214
           +C LGY+VPEWVE++P+L DI++I G   ++PTTTI++PLKSDKV  VK+QLS++HPE+ 
Sbjct: 36  NCNLGYIVPEWVEKRPSLVDIQKINGFGSAIPTTTIIMPLKSDKVKPVKEQLSNVHPEI- 94

Query: 215 LFLSKIRQLSVREHNKNPKLNTVAAVSISSEINFMTRKNMNAESYTLHLSAEESSNSGKE 274
                        H ++ K++ V +  I SE N ++RK+++AES                
Sbjct: 95  -------------HYQD-KVSIVNSHGIVSETNLVSRKSIDAES---------------- 124

Query: 275 CSYYMWKKKFPVRVENVVERRTGVEEWVITLAFPNQERLHRGLS-SPGVYAFLPTEMATN 333
                  +K  V+ EN V RR  VEE + TL F   +RL  G S  P +YAFLPTEM   
Sbjct: 125 -------QKLTVKNENRVGRRGEVEELLTTLVFLLGDRLALGDSFPPSIYAFLPTEME-- 175

Query: 334 FPFIIQADFVLASSRETILMDDKWNQGILECIPTAFMDAFKTLVIGSDEAPVSSLTQMFR 393
                    +L+  R    +DD WNQGIL C+P+AF++AF +LV  +D          F 
Sbjct: 176 ---------ILSLHR----LDDMWNQGILSCVPSAFVNAFTSLVKKTD---------AFS 213

Query: 394 FLPIESSPYEKLNHVRDQIKAKLLEEAIVP 423
           FLP++ S YE+LN VR+ I A++L E  VP
Sbjct: 214 FLPVKVSNYEELNDVRESIMARVLAEGNVP 243


>AT4G13750.1 | Symbols: NOV | Histidine kinase-, DNA gyrase B-, and
            HSP90-like ATPase family protein | chr4:7975191-7987558
            FORWARD LENGTH=2729
          Length = 2729

 Score =  153 bits (387), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 199/391 (50%), Gaps = 64/391 (16%)

Query: 9    VEEIRSNKFSI----GGKPNPLTEDLH----QAVKNLSAELYAKDVHFLMELIQNAEDNQ 60
            ++ IR ++F +     G    + +  H    +A++ LS ELY++D HF++EL+QNA+DN+
Sbjct: 1162 IDSIRRDEFGLDLTSSGSEMSMLQKQHARLGRALQCLSQELYSQDSHFILELVQNADDNK 1221

Query: 61   YPEGVSPALEFIITSEDITDSGAPATLLIFNNEKGFSPRNIESVCSVGRSTKKDSRSSGY 120
            YPE V P L FI+    I         ++ NNE GF P NI ++C VG+STKK S     
Sbjct: 1222 YPEHVEPTLTFILQKTGI---------VVLNNECGFMPENIRALCDVGQSTKKGSGGYIG 1272

Query: 121  IGEKGIGFKSVFLVTAQPYIFSNGYQIRFNEKPCPHCCLGYVVPEWV-----EEKPTLQD 175
              +KGIGFKSVF V+  P I SNG+  +F+        +GY++P  V     E   ++  
Sbjct: 1273 --KKGIGFKSVFRVSDAPEIHSNGFHFKFD---ISEGQIGYILPTVVPPHDIESLSSMLS 1327

Query: 176  IRQIYGKDSLPTTTIVLPLKS-----DKVNAVKQQLSSIHPEVLLFLSKIRQLSVREHNK 230
             R ++ KD+   T I LP ++       VN ++   S +HP +LLFL +++ +  R    
Sbjct: 1328 GRALHLKDAGWNTCITLPFRAIDSERTTVNHIEPMFSDLHPSLLLFLHRLQCIVYR---- 1383

Query: 231  NPKLNTVAAVSISSEINFMTRKNMNAESYTLHLSAEESSNSGKECSYYMWKKKFPVRVEN 290
                      ++  +   + RK + +++  + +S  E+S      ++++  +K  ++  N
Sbjct: 1384 ----------NVLDDSLLVMRKEVVSKN-IVKVSCGENS-----MTWFVASEK--LKATN 1425

Query: 291  VVERRTGVEEWVITLAFPNQERLHRG-----LSSPGVYAFLPTEMATNFPFIIQADFVLA 345
            +   R  V+   I++ F   + L  G     +    V+AFLP        FIIQ DF+L 
Sbjct: 1426 L---RDDVQTTEISIGF-TLDMLEDGTYRSCMIQEPVFAFLPLR-TYGLKFIIQGDFILT 1480

Query: 346  SSRETILMDDKWNQGILECIPTAFMDAFKTL 376
            SSRE +  D  WNQ +L   P  F+DA ++ 
Sbjct: 1481 SSREDVDEDSPWNQWLLSEFPGLFVDALRSF 1511