Miyakogusa Predicted Gene

Lj0g3v0231399.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0231399.1 tr|B6SUJ7|B6SUJ7_MAIZE Photosystem II core
complex proteins psbY OS=Zea mays PE=2
SV=1,56.03,1e-18,PsbY,Photosystem II PsbY; seg,NULL;
PSII_PsbY,Photosystem II PsbY,CUFF.15158.1
         (204 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G67740.1 | Symbols: PSBY, YCF32 | photosystem II BY | chr1:25...   106   1e-23

>AT1G67740.1 | Symbols: PSBY, YCF32 | photosystem II BY |
           chr1:25394429-25394998 REVERSE LENGTH=189
          Length = 189

 Score =  106 bits (265), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 83/197 (42%), Positives = 102/197 (51%), Gaps = 26/197 (13%)

Query: 14  KCFTTKMINPTNTKL---TASKPTTLFSFQNLPKGLSSAENTSVSTTSMAGTAIAGAIFS 70
           KC +   +NP+  KL   T SKP    S    PK      N S++ TS   TA+AGA+FS
Sbjct: 10  KCMS---LNPSPPKLQNQTKSKP--FISLPTPPK-----PNVSLAVTS---TALAGAVFS 56

Query: 71  SLVSCDXXXXXXXXXXXXXG----DNRGXXXXXXXXXXXXWVLFNILQPALNQINRMRNS 126
           SL   +                  DNRG            WVL+NILQPA+NQ+N+MR S
Sbjct: 57  SLSYSEPALAIQQIAQLAAANASSDNRGLALLLPIVPAIAWVLYNILQPAINQVNKMRES 116

Query: 127 NGVIVXXXXXXXXXXXXSGMLWAPEASAGELGMIADAAAGGSDNRGQLLLFVVAPAIGWV 186
            G+              SG+L        E    A+AAA  SD+RGQLLL VV PA+ WV
Sbjct: 117 KGI--VVGLGIGGGLAASGLL----TPPPEAYAAAEAAAASSDSRGQLLLIVVTPALLWV 170

Query: 187 LFNILQPALNQINRMRS 203
           L+NILQPALNQIN+MRS
Sbjct: 171 LYNILQPALNQINKMRS 187