Miyakogusa Predicted Gene
- Lj0g3v0231069.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0231069.1 tr|Q9SSL8|Q9SSL8_ARATH F3N23.29 protein
OS=Arabidopsis thaliana GN=F3N23.29 PE=4 SV=1,66.67,9e-19,
,CUFF.15112.1
(83 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G73090.2 | Symbols: | unknown protein; FUNCTIONS IN: molecul... 127 1e-30
AT1G73090.1 | Symbols: | unknown protein; Has 28 Blast hits to ... 127 1e-30
>AT1G73090.2 | Symbols: | unknown protein; FUNCTIONS IN:
molecular_function unknown; INVOLVED IN:
biological_process unknown; EXPRESSED IN: 21 plant
structures; EXPRESSED DURING: 12 growth stages. |
chr1:27488264-27490593 FORWARD LENGTH=334
Length = 334
Score = 127 bits (320), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 69/81 (85%)
Query: 1 MSTEQPCDLAYEFGDGLYDIKELPLGFPKPVKHPYPFNDHIVIYVRYLGPGVLVAQAWQE 60
M+TE+PCD+A +FGDGL I++ P GFP+P KHPYPFND +VIY+R++GPGV V QAWQE
Sbjct: 253 MATEEPCDVACKFGDGLLAIEDYPQGFPRPAKHPYPFNDSVVIYIRHIGPGVCVGQAWQE 312
Query: 61 GNNLEQVPRKLCSEILMVKDY 81
G L+QVP++LCS+ILMVK Y
Sbjct: 313 GRELQQVPQRLCSDILMVKQY 333
>AT1G73090.1 | Symbols: | unknown protein; Has 28 Blast hits to 28
proteins in 12 species: Archae - 0; Bacteria - 0;
Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other
Eukaryotes - 0 (source: NCBI BLink). |
chr1:27488264-27490593 FORWARD LENGTH=306
Length = 306
Score = 127 bits (320), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 54/81 (66%), Positives = 69/81 (85%)
Query: 1 MSTEQPCDLAYEFGDGLYDIKELPLGFPKPVKHPYPFNDHIVIYVRYLGPGVLVAQAWQE 60
M+TE+PCD+A +FGDGL I++ P GFP+P KHPYPFND +VIY+R++GPGV V QAWQE
Sbjct: 225 MATEEPCDVACKFGDGLLAIEDYPQGFPRPAKHPYPFNDSVVIYIRHIGPGVCVGQAWQE 284
Query: 61 GNNLEQVPRKLCSEILMVKDY 81
G L+QVP++LCS+ILMVK Y
Sbjct: 285 GRELQQVPQRLCSDILMVKQY 305