Miyakogusa Predicted Gene

Lj0g3v0231069.1
Show Alignment: 

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0231069.1 tr|Q9SSL8|Q9SSL8_ARATH F3N23.29 protein
OS=Arabidopsis thaliana GN=F3N23.29 PE=4 SV=1,66.67,9e-19,
,CUFF.15112.1
         (83 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G73090.2 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...   127   1e-30
AT1G73090.1 | Symbols:  | unknown protein; Has 28 Blast hits to ...   127   1e-30

>AT1G73090.2 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; EXPRESSED IN: 21 plant
           structures; EXPRESSED DURING: 12 growth stages. |
           chr1:27488264-27490593 FORWARD LENGTH=334
          Length = 334

 Score =  127 bits (320), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 54/81 (66%), Positives = 69/81 (85%)

Query: 1   MSTEQPCDLAYEFGDGLYDIKELPLGFPKPVKHPYPFNDHIVIYVRYLGPGVLVAQAWQE 60
           M+TE+PCD+A +FGDGL  I++ P GFP+P KHPYPFND +VIY+R++GPGV V QAWQE
Sbjct: 253 MATEEPCDVACKFGDGLLAIEDYPQGFPRPAKHPYPFNDSVVIYIRHIGPGVCVGQAWQE 312

Query: 61  GNNLEQVPRKLCSEILMVKDY 81
           G  L+QVP++LCS+ILMVK Y
Sbjct: 313 GRELQQVPQRLCSDILMVKQY 333


>AT1G73090.1 | Symbols:  | unknown protein; Has 28 Blast hits to 28
           proteins in 12 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 28; Viruses - 0; Other
           Eukaryotes - 0 (source: NCBI BLink). |
           chr1:27488264-27490593 FORWARD LENGTH=306
          Length = 306

 Score =  127 bits (320), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 54/81 (66%), Positives = 69/81 (85%)

Query: 1   MSTEQPCDLAYEFGDGLYDIKELPLGFPKPVKHPYPFNDHIVIYVRYLGPGVLVAQAWQE 60
           M+TE+PCD+A +FGDGL  I++ P GFP+P KHPYPFND +VIY+R++GPGV V QAWQE
Sbjct: 225 MATEEPCDVACKFGDGLLAIEDYPQGFPRPAKHPYPFNDSVVIYIRHIGPGVCVGQAWQE 284

Query: 61  GNNLEQVPRKLCSEILMVKDY 81
           G  L+QVP++LCS+ILMVK Y
Sbjct: 285 GRELQQVPQRLCSDILMVKQY 305