Miyakogusa Predicted Gene

Lj0g3v0231049.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0231049.1 Non Chatacterized Hit- tr|B9SIP9|B9SIP9_RICCO
ATP-dependent clp protease ATP-binding subunit clpx,
p,60.87,3e-17,P-loop containing nucleoside triphosphate
hydrolases,NULL; no description,NULL; ClpB_D2-small,Clp
AT,CUFF.15104.1
         (120 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G53350.1 | Symbols: CLPX | CLP protease regulatory subunit X ...   127   2e-30
AT1G33360.1 | Symbols:  | ATP-dependent Clp protease | chr1:1209...    96   4e-21
AT5G49840.1 | Symbols:  | ATP-dependent Clp protease | chr5:2025...    88   1e-18

>AT5G53350.1 | Symbols: CLPX | CLP protease regulatory subunit X |
           chr5:21644060-21647503 FORWARD LENGTH=579
          Length = 579

 Score =  127 bits (319), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 71/124 (57%), Positives = 86/124 (69%), Gaps = 4/124 (3%)

Query: 1   MFQINGVKLHFTESALKSIARKAISKNTGARGLRSILESVLVDAMYEIPDIRTGXXXXXX 60
           M+Q+N VKLHFTESAL+ IARKAI+KNTGARGLR++LES+L+D+MYEIPD  TG      
Sbjct: 456 MYQMNSVKLHFTESALRLIARKAITKNTGARGLRALLESILMDSMYEIPDEGTGSDMIEA 515

Query: 61  XXXXXXXXGKDGCRG-GAKILYGNGALDRYLSE---QKNDSETMEASGGDHESETELPSI 116
                     +G RG GAKIL G GAL RYLSE   + +   T E S G+ E E E+PS+
Sbjct: 516 VVVDEEAVEGEGRRGSGAKILRGKGALARYLSETNSKDSPQTTKEGSDGETEVEAEIPSV 575

Query: 117 VASM 120
           VASM
Sbjct: 576 VASM 579


>AT1G33360.1 | Symbols:  | ATP-dependent Clp protease |
           chr1:12092111-12095789 FORWARD LENGTH=656
          Length = 656

 Score = 96.3 bits (238), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/100 (49%), Positives = 66/100 (66%), Gaps = 1/100 (1%)

Query: 1   MFQINGVKLHFTESALKSIARKAISKNTGARGLRSILESVLVDAMYEIPDIRTGXXXXXX 60
           +F +N VKLHFTE AL+ I+++A+ KNTGARGLR++LES+L +AM+EIPD + G      
Sbjct: 541 LFSMNNVKLHFTEKALEIISKQAMVKNTGARGLRALLESILTEAMFEIPDDKKGDERIDA 600

Query: 61  XXXXXXXXGKDGCRG-GAKILYGNGALDRYLSEQKNDSET 99
                     +  RG  AKIL G+GA +RYLSE K+   T
Sbjct: 601 VIVDEESTSSEASRGCTAKILRGDGAFERYLSENKSKDAT 640


>AT5G49840.1 | Symbols:  | ATP-dependent Clp protease |
           chr5:20255243-20259035 FORWARD LENGTH=608
          Length = 608

 Score = 88.2 bits (217), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 48/103 (46%), Positives = 66/103 (64%), Gaps = 2/103 (1%)

Query: 1   MFQINGVKLHFTESALKSIARKAISKNTGARGLRSILESVLVDAMYEIPD-IRTGXXXXX 59
           +F++N V+L FTE A + IARKA+SKNTGARGLRSILES+L +AM+E+PD I  G     
Sbjct: 497 LFRMNNVQLQFTEGATRLIARKAMSKNTGARGLRSILESILTEAMFEVPDSITEGSQSIK 556

Query: 60  XXXXXXXXXGKDGCRG-GAKILYGNGALDRYLSEQKNDSETME 101
                    G  G  G GAKIL G+  L +++ E ++  ++ E
Sbjct: 557 AVLVDEEAVGSVGSPGCGAKILKGDNVLQQFVEEAESKEKSKE 599