Miyakogusa Predicted Gene

Lj0g3v0230969.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0230969.1 Non Chatacterized Hit- tr|Q5SNE7|Q5SNE7_ORYSJ
Putative uncharacterized protein P0512G09.2-1
OS=Oryza,44.14,5e-19,seg,NULL; DDE_4,NULL; UNCHARACTERIZED,Harbinger
transposase-derived
nuclease,gene.Ljchr0_pseudomol_20120828.path1.gene23772.1
         (137 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G12010.1 | Symbols:  | unknown protein; INVOLVED IN: response...   115   1e-26
AT4G29780.1 | Symbols:  | unknown protein; BEST Arabidopsis thal...   104   1e-23
AT3G55350.1 | Symbols:  | PIF / Ping-Pong family of plant transp...    46   9e-06

>AT5G12010.1 | Symbols:  | unknown protein; INVOLVED IN: response to
           salt stress; LOCATED IN: chloroplast, plasma membrane,
           membrane; EXPRESSED IN: 23 plant structures; EXPRESSED
           DURING: 13 growth stages; BEST Arabidopsis thaliana
           protein match is: unknown protein (TAIR:AT4G29780.1);
           Has 1807 Blast hits to 1807 proteins in 277 species:
           Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347;
           Plants - 385; Viruses - 0; Other Eukaryotes - 339
           (source: NCBI BLink). | chr5:3877975-3879483 REVERSE
           LENGTH=502
          Length = 502

 Score =  115 bits (287), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 61/127 (48%), Positives = 81/127 (63%), Gaps = 3/127 (2%)

Query: 9   LRGMWIVGTSGCPLLDWXXXXXXXXXXX-XQHTLNDKIFKIQEVAKEAFSRLKGRWSILQ 67
           L+GMW+ G  G PLLDW             QH  N+K+ ++Q VAKEAF RLKGRW+ LQ
Sbjct: 366 LKGMWVAGGPGHPLLDWVLVPYTQQNLTWTQHAFNEKMSEVQGVAKEAFGRLKGRWACLQ 425

Query: 68  -LIDVKPKELYLTLGVCCVLHNICEMNGDEIDPGLKFHLMDDELLPQIADLTSKSAKKAR 126
              +VK ++L   LG CCVLHNICEM  ++++P L   ++DDE+LP+   L S +A KAR
Sbjct: 426 KRTEVKLQDLPTVLGACCVLHNICEMREEKMEPELMVEVIDDEVLPENV-LRSVNAMKAR 484

Query: 127 DKIAEYL 133
           D I+  L
Sbjct: 485 DTISHNL 491


>AT4G29780.1 | Symbols:  | unknown protein; BEST Arabidopsis
           thaliana protein match is: unknown protein
           (TAIR:AT5G12010.1); Has 945 Blast hits to 944 proteins
           in 87 species: Archae - 0; Bacteria - 0; Metazoa - 519;
           Fungi - 43; Plants - 365; Viruses - 0; Other Eukaryotes
           - 18 (source: NCBI BLink). | chr4:14579859-14581481
           FORWARD LENGTH=540
          Length = 540

 Score =  104 bits (260), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 58/127 (45%), Positives = 74/127 (58%), Gaps = 3/127 (2%)

Query: 9   LRGMWIVGTSGCPLLDWXXXXXXXXXXX-XQHTLNDKIFKIQEVAKEAFSRLKGRWSILQ 67
           LR  WIVG SG PL D+             QH  N+ I +IQ +A  AF RLKGRW+ LQ
Sbjct: 404 LRDSWIVGNSGFPLTDYLLVPYTRQNLTWTQHAFNESIGEIQGIATAAFERLKGRWACLQ 463

Query: 68  -LIDVKPKELYLTLGVCCVLHNICEMNGDEIDPGLKFHLMDDELLPQIADLTSKSAKKAR 126
              +VK ++L   LG CCVLHNICEM  +E+ P LKF + DD  +P+  ++ S SA   R
Sbjct: 464 KRTEVKLQDLPYVLGACCVLHNICEMRKEEMLPELKFEVFDDVAVPE-NNIRSASAVNTR 522

Query: 127 DKIAEYL 133
           D I+  L
Sbjct: 523 DHISHNL 529


>AT3G55350.1 | Symbols:  | PIF / Ping-Pong family of plant
           transposases | chr3:20518518-20520690 FORWARD LENGTH=406
          Length = 406

 Score = 45.8 bits (107), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/111 (31%), Positives = 51/111 (45%), Gaps = 11/111 (9%)

Query: 13  WIVGTSGCPLLDWXXXXXXXXXXXXQHT-LNDKIFKIQEVAKEAFSRLKGRWSILQLIDV 71
           +IVG SG PLL W              T  N +  +  + A+ A S+LK RW I+  +  
Sbjct: 275 YIVGDSGFPLLPWLLTPYQGKPTSLPQTEFNKRHSEATKAAQMALSKLKDRWRIINGVMW 334

Query: 72  KP--KELYLTLGVCCVLHNICEMNGDEIDPGLKFHLMDDELLPQIADLTSK 120
            P    L   + VCC+LHNI       ID  ++   +DD+ L Q  D+  +
Sbjct: 335 MPDRNRLPRIIFVCCLLHNII------ID--MEDQTLDDQPLSQQHDMNYR 377