Miyakogusa Predicted Gene

Lj0g3v0230749.3
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0230749.3 tr|D3BRB4|D3BRB4_POLPA RING zinc
finger-containing protein OS=Polysphondylium pallidum GN=vps11
PE=4,34.15,0.000000000005,seg,NULL; VACUOLAR MEMBRANE PROTEIN PEP5,
11,NULL; VACUOLAR MEMBRANE PROTEIN RELATED,NULL; no
descri,CUFF.15081.3
         (165 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G05170.1 | Symbols: ATVPS11, VPS11 | vacuolar protein sorting...   227   2e-60

>AT2G05170.1 | Symbols: ATVPS11, VPS11 | vacuolar protein sorting 11
           | chr2:1870020-1873278 FORWARD LENGTH=932
          Length = 932

 Score =  227 bits (579), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 112/165 (67%), Positives = 129/165 (78%), Gaps = 14/165 (8%)

Query: 1   MYQWRKFEFFEEKYASKCVIPEXXXXXXXXXXXKNEGKKIDCCSSGRGKVVTGFDDGTVC 60
           MYQ RKF+FFEEKY  K  IPE                 I CCSSGRGKVV G +DG+V 
Sbjct: 1   MYQLRKFDFFEEKYGGK--IPEDVTG------------DIQCCSSGRGKVVIGSNDGSVS 46

Query: 61  LFDRGLKFNYAFQPHSSSVLFLQQLKQRNFLVTIGEDEQLTPQNSALCLKVFDLDKMQSE 120
             DRG+KF+  FQ HSSSVLFLQ LKQRNFLVT+GEDEQ++PQ S +CLKVFDLDK+Q E
Sbjct: 47  FLDRGVKFDSGFQAHSSSVLFLQHLKQRNFLVTVGEDEQISPQQSGMCLKVFDLDKVQEE 106

Query: 121 SSSTASPDCVGILRIFTNQFPEAQITSFLVLEEVPPILLIAIGLD 165
            +S+++P+C+GILRIFTNQFPEA+ITSFLVLEEVPPILLIAIGLD
Sbjct: 107 GTSSSAPECIGILRIFTNQFPEAKITSFLVLEEVPPILLIAIGLD 151