Miyakogusa Predicted Gene

Lj0g3v0230509.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0230509.1 tr|A9SKT2|A9SKT2_PHYPA Predicted protein
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_233549,40.49,1e-17,Putative DNA-binding (bihelical)
motif predi,DNA-binding SAP; SAP,DNA-binding SAP; no
description,DN,CUFF.15082.1
         (594 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G39680.2 | Symbols:  | SAP domain-containing protein | chr4:1...   251   1e-66
AT4G39680.1 | Symbols:  | SAP domain-containing protein | chr4:1...   251   1e-66

>AT4G39680.2 | Symbols:  | SAP domain-containing protein |
           chr4:18414604-18416938 REVERSE LENGTH=633
          Length = 633

 Score =  251 bits (641), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 171/329 (51%), Positives = 212/329 (64%), Gaps = 29/329 (8%)

Query: 268 DTKALCEDLMPDSSIPENQVSEVNPSLGSQVKSDSISTDSVSINQKNELKDTIIADNVKL 327
           D+KA   + + + S   NQVSEV P  G +VKSD ISTDSVS N+K ELKD  IADNVKL
Sbjct: 195 DSKAQPSEAVLEKSAMYNQVSEVIPVTGFEVKSDCISTDSVSNNEKIELKDNKIADNVKL 254

Query: 328 EQDFVRPEMVQEPSSRNDEPVYDESNSMDVGGLHEKKASVEE-NTNNITSPDFNKTINSD 386
           EQ+  +    QEPS+     V  ES+ MDV    E+K SV   + +N  + D  K  N  
Sbjct: 255 EQNVNK---FQEPST-----VVGESHPMDVEEPLEQKTSVGGGDDSNAANADMIKENNII 306

Query: 387 DAGYPEKLNLDRSSGDDSMEEDVPETKQFDSKFNVDELSLRDKGENIEVSIVKEENNTVV 446
           DAG  EKLNLDRSSGD+SME D PETKQ +S      ++  DK   IE+ + KEE+    
Sbjct: 307 DAGDSEKLNLDRSSGDESME-DEPETKQSES------ITSDDKSAKIEM-LSKEESRA-- 356

Query: 447 VGDGLSAGKSDTNLDIDMSPVALADKRKYA--EQASVGNNEPAKRQRRWSTETRKGADLQ 504
               + AGK  +  +    P+  +DKRK    +Q +VGNNEPAKR RRW++ + K  + Q
Sbjct: 357 ---DMDAGKGKSPEN-KSHPLVASDKRKLPANDQEAVGNNEPAKR-RRWNSNSIKVPEAQ 411

Query: 505 ST-TPRPPTTPKDEPVAPKRNFPRSDSFAAADAPKERIVPPSQRTPTNSLRIDRFLRPFT 563
            T +  P TTP+   +  KR+F RSDS  + D PKER+VPPS + PTNSLRIDRFLRPFT
Sbjct: 412 ITNSATPTTTPRSTGL--KRDFSRSDSSVSEDGPKERVVPPSPKEPTNSLRIDRFLRPFT 469

Query: 564 LKAVQELLGKTGKVSSFWMDQIKTHCYVT 592
           LKAVQELLGKTG V+SFWMD IKTHCYV+
Sbjct: 470 LKAVQELLGKTGNVTSFWMDHIKTHCYVS 498


>AT4G39680.1 | Symbols:  | SAP domain-containing protein |
           chr4:18414604-18416938 REVERSE LENGTH=633
          Length = 633

 Score =  251 bits (641), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 171/329 (51%), Positives = 212/329 (64%), Gaps = 29/329 (8%)

Query: 268 DTKALCEDLMPDSSIPENQVSEVNPSLGSQVKSDSISTDSVSINQKNELKDTIIADNVKL 327
           D+KA   + + + S   NQVSEV P  G +VKSD ISTDSVS N+K ELKD  IADNVKL
Sbjct: 195 DSKAQPSEAVLEKSAMYNQVSEVIPVTGFEVKSDCISTDSVSNNEKIELKDNKIADNVKL 254

Query: 328 EQDFVRPEMVQEPSSRNDEPVYDESNSMDVGGLHEKKASVEE-NTNNITSPDFNKTINSD 386
           EQ+  +    QEPS+     V  ES+ MDV    E+K SV   + +N  + D  K  N  
Sbjct: 255 EQNVNK---FQEPST-----VVGESHPMDVEEPLEQKTSVGGGDDSNAANADMIKENNII 306

Query: 387 DAGYPEKLNLDRSSGDDSMEEDVPETKQFDSKFNVDELSLRDKGENIEVSIVKEENNTVV 446
           DAG  EKLNLDRSSGD+SME D PETKQ +S      ++  DK   IE+ + KEE+    
Sbjct: 307 DAGDSEKLNLDRSSGDESME-DEPETKQSES------ITSDDKSAKIEM-LSKEESRA-- 356

Query: 447 VGDGLSAGKSDTNLDIDMSPVALADKRKYA--EQASVGNNEPAKRQRRWSTETRKGADLQ 504
               + AGK  +  +    P+  +DKRK    +Q +VGNNEPAKR RRW++ + K  + Q
Sbjct: 357 ---DMDAGKGKSPEN-KSHPLVASDKRKLPANDQEAVGNNEPAKR-RRWNSNSIKVPEAQ 411

Query: 505 ST-TPRPPTTPKDEPVAPKRNFPRSDSFAAADAPKERIVPPSQRTPTNSLRIDRFLRPFT 563
            T +  P TTP+   +  KR+F RSDS  + D PKER+VPPS + PTNSLRIDRFLRPFT
Sbjct: 412 ITNSATPTTTPRSTGL--KRDFSRSDSSVSEDGPKERVVPPSPKEPTNSLRIDRFLRPFT 469

Query: 564 LKAVQELLGKTGKVSSFWMDQIKTHCYVT 592
           LKAVQELLGKTG V+SFWMD IKTHCYV+
Sbjct: 470 LKAVQELLGKTGNVTSFWMDHIKTHCYVS 498