Miyakogusa Predicted Gene
- Lj0g3v0229879.2
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0229879.2 tr|B9I7N3|B9I7N3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_1097327 PE=3
SV=1,60.87,0.00000008,seg,NULL,CUFF.15033.2
(330 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G20540.1 | Symbols: POLGAMMA1 | polymerase gamma 1 | chr3:716... 50 1e-06
AT3G20540.2 | Symbols: POLGAMMA1 | polymerase gamma 1 | chr3:716... 50 1e-06
>AT3G20540.1 | Symbols: POLGAMMA1 | polymerase gamma 1 |
chr3:7168261-7173357 FORWARD LENGTH=1034
Length = 1034
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 249 EISEEKITRVNGDCSFDVTTEESSNATIPREAHGTDKSRLRDRLCSIYEDILVVDNIPLA 308
E ++ + +N D + D + + + ATI + T+ S++R L IY + VVDN+ A
Sbjct: 195 ETTDVTLKPLNSDTTLDNASYKKT-ATISKVEKCTNLSQVRANLKKIYNRVRVVDNVSSA 253
Query: 309 EEVAKMLTGKYQHLIYACDTEV 330
+E +L +Y++L++ACDTEV
Sbjct: 254 KETVALLMNQYRNLVHACDTEV 275
>AT3G20540.2 | Symbols: POLGAMMA1 | polymerase gamma 1 |
chr3:7168261-7173357 FORWARD LENGTH=1049
Length = 1049
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
Query: 249 EISEEKITRVNGDCSFDVTTEESSNATIPREAHGTDKSRLRDRLCSIYEDILVVDNIPLA 308
E ++ + +N D + D + + + ATI + T+ S++R L IY + VVDN+ A
Sbjct: 210 ETTDVTLKPLNSDTTLDNASYKKT-ATISKVEKCTNLSQVRANLKKIYNRVRVVDNVSSA 268
Query: 309 EEVAKMLTGKYQHLIYACDTEV 330
+E +L +Y++L++ACDTEV
Sbjct: 269 KETVALLMNQYRNLVHACDTEV 290