Miyakogusa Predicted Gene

Lj0g3v0229879.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0229879.1 tr|B9I7N3|B9I7N3_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_1097327 PE=3
SV=1,60.87,0.00000009,PROKAR_LIPOPROTEIN,NULL; seg,NULL,CUFF.15033.1
         (322 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G20540.1 | Symbols: POLGAMMA1 | polymerase gamma 1 | chr3:716...    51   1e-06
AT3G20540.2 | Symbols: POLGAMMA1 | polymerase gamma 1 | chr3:716...    51   1e-06

>AT3G20540.1 | Symbols: POLGAMMA1 | polymerase gamma 1 |
           chr3:7168261-7173357 FORWARD LENGTH=1034
          Length = 1034

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 241 EISEEKITRVNGDCSFDVTTEESSNATIPREAHGTDKSRLRDRLCSIYEDILVVDNIPLA 300
           E ++  +  +N D + D  + + + ATI +    T+ S++R  L  IY  + VVDN+  A
Sbjct: 195 ETTDVTLKPLNSDTTLDNASYKKT-ATISKVEKCTNLSQVRANLKKIYNRVRVVDNVSSA 253

Query: 301 EEVAKMLTGKYQHLIYACDTEV 322
           +E   +L  +Y++L++ACDTEV
Sbjct: 254 KETVALLMNQYRNLVHACDTEV 275


>AT3G20540.2 | Symbols: POLGAMMA1 | polymerase gamma 1 |
           chr3:7168261-7173357 FORWARD LENGTH=1049
          Length = 1049

 Score = 50.8 bits (120), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 1/82 (1%)

Query: 241 EISEEKITRVNGDCSFDVTTEESSNATIPREAHGTDKSRLRDRLCSIYEDILVVDNIPLA 300
           E ++  +  +N D + D  + + + ATI +    T+ S++R  L  IY  + VVDN+  A
Sbjct: 210 ETTDVTLKPLNSDTTLDNASYKKT-ATISKVEKCTNLSQVRANLKKIYNRVRVVDNVSSA 268

Query: 301 EEVAKMLTGKYQHLIYACDTEV 322
           +E   +L  +Y++L++ACDTEV
Sbjct: 269 KETVALLMNQYRNLVHACDTEV 290