Miyakogusa Predicted Gene
- Lj0g3v0228699.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0228699.1 Non Chatacterized Hit- tr|G9FSH8|G9FSH8_ELAGV
Putative brevis radix protein (Fragment) OS=Elaeis
gui,71.01,1e-18,REGULATOR OF CHROMOSOME CONDENSATION-RELATED,NULL;
REGULATOR OF CHROMOSOME CONDENSATION,NULL; seg,NU,CUFF.14924.1
(334 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G31880.1 | Symbols: NLM9, BRX | DZC (Disease resistance/zinc ... 427 e-120
AT2G35600.1 | Symbols: ATBRXL1, BRXL1 | BREVIS RADIX-like 1 | ch... 382 e-106
AT1G54180.2 | Symbols: ATBRXL3, BRX-LIKE3 | BREVIS RADIX-like 3 ... 273 2e-73
AT3G14000.2 | Symbols: ATBRXL2, BRX-LIKE2 | DZC (Disease resista... 270 2e-72
AT3G14000.1 | Symbols: ATBRXL2, BRX-LIKE2 | DZC (Disease resista... 270 2e-72
AT1G54180.1 | Symbols: ATBRXL3, BRX-LIKE3 | BREVIS RADIX-like 3 ... 254 4e-68
AT5G20540.1 | Symbols: ATBRXL4, BRX-LIKE4, BRXL4 | BREVIS RADIX-... 233 1e-61
AT2G21030.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Disease re... 187 1e-47
AT5G12350.1 | Symbols: | Regulator of chromosome condensation (... 91 1e-18
AT5G19420.1 | Symbols: | Regulator of chromosome condensation (... 83 2e-16
AT5G19420.2 | Symbols: | Regulator of chromosome condensation (... 83 2e-16
AT1G69710.1 | Symbols: | Regulator of chromosome condensation (... 75 9e-14
AT1G65920.1 | Symbols: | Regulator of chromosome condensation (... 64 1e-10
AT5G42140.1 | Symbols: | Regulator of chromosome condensation (... 63 3e-10
AT1G76950.1 | Symbols: PRAF1 | Regulator of chromosome condensat... 62 5e-10
AT4G16990.5 | Symbols: RLM3 | disease resistance protein (TIR-NB... 59 5e-09
AT4G16990.1 | Symbols: RLM3 | disease resistance protein (TIR-NB... 59 7e-09
AT3G23270.1 | Symbols: | Regulator of chromosome condensation (... 57 2e-08
AT4G16990.4 | Symbols: RLM3 | disease resistance protein (TIR-NB... 55 6e-08
AT4G16990.3 | Symbols: RLM3 | disease resistance protein (TIR-NB... 55 6e-08
AT4G16990.2 | Symbols: RLM3 | disease resistance protein (TIR-NB... 54 1e-07
>AT1G31880.1 | Symbols: NLM9, BRX | DZC (Disease resistance/zinc
finger/chromosome condensation-like region) domain
containing protein | chr1:11447804-11450053 FORWARD
LENGTH=344
Length = 344
Score = 427 bits (1098), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/353 (64%), Positives = 266/353 (75%), Gaps = 28/353 (7%)
Query: 1 MFTCIACTKQ--SEDEEGGPRESGTPSTKEAVKSLTTQIKDMALKFSGAYKQCKPCTGSS 58
MF+CIACTK E+ E G R TP+TKEAVKSLT QIKDMALKFSGAYKQCKPCTGSS
Sbjct: 1 MFSCIACTKADGGEEVEHGARGGTTPNTKEAVKSLTIQIKDMALKFSGAYKQCKPCTGSS 60
Query: 59 SS-YKKGHRPYPDFDTISEGVPYPYMGGASSSSTPAWDFT-TSNYPGGRPDPRFAGDR-T 115
SS KKGHR +PD+D SEGVPYP+MGG S+ STPAWDFT +S++P GR + +F
Sbjct: 61 SSPLKKGHRSFPDYDNASEGVPYPFMGG-SAGSTPAWDFTNSSHHPAGRLESKFTSIYGN 119
Query: 116 PRGRDSASVCDVVLENEEEPKEWMAQVEPGVHITFTSLPNGGNDLKRIRFSREMFNKWQA 175
R SA CDVVL+ ++ PKEWMAQVEPGVHITF SLP GGNDLKRIRFSREMF+KWQA
Sbjct: 120 DRESISAQSCDVVLD-DDGPKEWMAQVEPGVHITFASLPTGGNDLKRIRFSREMFDKWQA 178
Query: 176 QRWWGENYDRIMELYNVQRFNRQSLNTPPRSEDE-QRDSTYSKLTSAQESPMISHKDWTP 234
QRWWGENYD+I+ELYNVQRFNRQ+L TP RS+D+ QRDSTYSK+ SA+ES KDWTP
Sbjct: 179 QRWWGENYDKIVELYNVQRFNRQALQTPARSDDQSQRDSTYSKMDSARES-----KDWTP 233
Query: 235 RSQYKP------------SDYGGGGHQFHAGPSMEPSRPTTSSRDE-PSISNASEMESEW 281
R ++P S+YG G +H GP M+ +R TTSSRD+ PS+SNASEM++EW
Sbjct: 234 RHNFRPPGSVPHHFYGGSSNYGPG--SYHGGPPMDAARTTTSSRDDPPSMSNASEMQAEW 291
Query: 282 VEQDEPGVYITIRQLADGTXXXXXXXXXXXXXXXXNAKTWWEENRERIQAQYL 334
+E+DEPGVYITIRQL+DGT +AKTWWE+NRERIQ QYL
Sbjct: 292 IEEDEPGVYITIRQLSDGTRELRRVRFSRERFGEVHAKTWWEQNRERIQTQYL 344
>AT2G35600.1 | Symbols: ATBRXL1, BRXL1 | BREVIS RADIX-like 1 |
chr2:14941092-14943281 REVERSE LENGTH=331
Length = 331
Score = 382 bits (982), Expect = e-106, Method: Compositional matrix adjust.
Identities = 219/346 (63%), Positives = 254/346 (73%), Gaps = 27/346 (7%)
Query: 1 MFTCIACTKQSEDEEGGPRE----SGTPSTKEAVKSLTTQIKDMALKFSGAYKQCKPCTG 56
MFTCI CTK ++ E + S TP+TKEAVKSLTTQIKDMA KFSG++KQ KP G
Sbjct: 1 MFTCINCTKMADRGEEDEEDEARGSTTPNTKEAVKSLTTQIKDMASKFSGSHKQSKPTPG 60
Query: 57 SSSSYKKGHRPYPDFDTISEGVPYPYMGGASSSSTPAWDFTTSNY-PGGRPDPRF----A 111
SSSS R +PDFDT SE VPYPY GG S+SSTPAWD S+Y GRPD RF
Sbjct: 61 SSSS---NLRKFPDFDTASESVPYPYPGG-STSSTPAWDLPRSSYHQSGRPDSRFTSMYG 116
Query: 112 GDRTPRGRDSASVCDVVLENEEEPKEWMAQVEPGVHITFTSLPNGGNDLKRIRFSREMFN 171
G+R SA CDVVLE++E PKEWMAQVEPGVHITF SLP+GGNDLKRIRFSRE+F+
Sbjct: 117 GERES---ISAQSCDVVLEDDE-PKEWMAQVEPGVHITFVSLPSGGNDLKRIRFSREVFD 172
Query: 172 KWQAQRWWGENYDRIMELYNVQRFNRQSLNTPPRSEDE-QRDSTYSKLTSAQESPMISHK 230
KWQAQRWWGENYDRI+ELYNVQRFNRQ+L TP RSED+ QRDSTY+++ SA+ES +
Sbjct: 173 KWQAQRWWGENYDRIVELYNVQRFNRQALQTPGRSEDQSQRDSTYTRIDSARES-----R 227
Query: 231 DWTPR-SQYKPSDYGGGGHQFHAGPSMEPSRPTTSSRDE-PSISNASEMESEWVEQDEPG 288
DWT R + ++P G H F+ GP M+ +R TTSSRDE PS+SNASEM+ EWVE+DEPG
Sbjct: 228 DWTQRDNNFRPPG-GSVPHHFY-GPPMDAARITTSSRDEPPSMSNASEMQGEWVEEDEPG 285
Query: 289 VYITIRQLADGTXXXXXXXXXXXXXXXXNAKTWWEENRERIQAQYL 334
VYITIRQL DGT +AKTWWE+NR+RIQ QYL
Sbjct: 286 VYITIRQLPDGTRELRRVRFSRERFGEVHAKTWWEQNRDRIQTQYL 331
>AT1G54180.2 | Symbols: ATBRXL3, BRX-LIKE3 | BREVIS RADIX-like 3 |
chr1:20227697-20229728 FORWARD LENGTH=344
Length = 344
Score = 273 bits (697), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 169/367 (46%), Positives = 213/367 (58%), Gaps = 56/367 (15%)
Query: 1 MFTCIACTKQ----------SEDEEGGPRESGTPSTKEAVKSLTTQIKDMALKFSGAYKQ 50
M TCIACTKQ EDEE G GTP TK+A+KSLT+Q+KDMA+K SGAYK
Sbjct: 1 MLTCIACTKQLNTNNGGSTREEDEEHGV--IGTPRTKQAIKSLTSQLKDMAVKASGAYKN 58
Query: 51 CKPCTGSSSSYKKGHRPYPDFDTISEG--VPYPYMGGASSSSTP-AWDFTTSNYPGGRPD 107
CKPC+G+++ + +R Y D D S+ Y Y +++STP W G +
Sbjct: 59 CKPCSGTTN--RNQNRNYADSDAASDSGRFHYSYQRAGTATSTPKIW--------GNEME 108
Query: 108 PRFAGDRTPRG---RDSASVCDVVLENEEEPKEWMAQVEPGVHITFTSLPNGGNDLKRIR 164
R G + G S +V ++E KEW+AQVEPGV ITF SLP GGNDLKRIR
Sbjct: 109 SRLKGISSEEGTPTSMSGRTESIVFMEDDEVKEWVAQVEPGVLITFVSLPQGGNDLKRIR 168
Query: 165 FSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQS--LNTPPRSEDEQRDSTYSKLTSAQ 222
FSREMFNKWQAQ+WW EN++++MELYNVQ FN+QS L TPP SED S++ S +
Sbjct: 169 FSREMFNKWQAQKWWVENFEKVMELYNVQ-FNQQSVPLQTPPVSED-----GGSQIQSVK 222
Query: 223 ESPMISHKDWTPRSQYKPSDYGGGGHQFHAGP---SMEPSRPTTSSRD------------ 267
+SP+ P + +P G F + P S+ ++ TSS D
Sbjct: 223 DSPVTP-----PLERERPHRNIPGSSGFASTPKLSSISGTKTETSSIDGSARSSSVDRSE 277
Query: 268 EPSISNASEMESEWVEQDEPGVYITIRQLADGTXXXXXXXXXXXXXXXXNAKTWWEENRE 327
E S+SNAS+MESEWVEQDEPG+YITIR L DG +A+ WWE+NR
Sbjct: 278 EVSVSNASDMESEWVEQDEPGIYITIRALPDGNRELRRVRFSRDKFGETHARLWWEQNRA 337
Query: 328 RIQAQYL 334
RIQ QYL
Sbjct: 338 RIQQQYL 344
>AT3G14000.2 | Symbols: ATBRXL2, BRX-LIKE2 | DZC (Disease
resistance/zinc finger/chromosome condensation-like
region) domain containing protein | chr3:4631170-4633353
REVERSE LENGTH=374
Length = 374
Score = 270 bits (689), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 168/386 (43%), Positives = 211/386 (54%), Gaps = 64/386 (16%)
Query: 1 MFTCIACTKQSEDEEGGPRESG-----------TPSTKEAVKSLTTQIKDMALKFSGAYK 49
M TCIACTKQ GG ++ TP +K+ +KSLT+QIKDMA+K SGAYK
Sbjct: 1 MLTCIACTKQLNTNNGGSKKQEEDEEEEDRVIETPRSKQ-IKSLTSQIKDMAVKASGAYK 59
Query: 50 QCKPCTGSSSSYKKGHRPYPDFDTISEG--VPYPYMGGASSSSTPAWDFTTSNYPGGRPD 107
CKPC+GSS+ K +R Y D D S Y Y S SSTP R
Sbjct: 60 SCKPCSGSSNQNK--NRSYADSDVASNSGRFRYAYKRAGSGSSTPK---ILGKEMESRLK 114
Query: 108 PRFAGDRTPRGRDSASVCDVVLENEEEPKEWMAQVEPGVHITFTSLPNGGNDLKRIRFSR 167
+G+ TP + V +E E+E KEW+AQVEPGV ITF SLP GGND+KRIRFSR
Sbjct: 115 GFLSGEGTPESMSGRTESTVFMEEEDELKEWVAQVEPGVLITFVSLPEGGNDMKRIRFSR 174
Query: 168 EMFNKWQAQRWWGENYDRIMELYNVQRFNRQS--LNTPPRSEDEQRDSTYSKLTSAQESP 225
EMF+KWQAQ+WW EN+D++MELYNVQ+FN+QS L TPPRSED S++ S + P
Sbjct: 175 EMFDKWQAQKWWAENFDKVMELYNVQQFNQQSVPLPTPPRSED-----GSSRIQSTKNGP 229
Query: 226 M-------------------ISHKDWTPRSQYKPSDYGG----------GGHQFHAGPSM 256
++H+ T ++Q + D G G +
Sbjct: 230 ATPPLNKECSRGKGYASSGSLAHQP-TTQTQSRHHDSSGLATTPKLSSISGTKTETSSVD 288
Query: 257 EPSRPTTS--------SRDEPSISNASEMESEWVEQDEPGVYITIRQLADGTXXXXXXXX 308
E +R + S S +E S+SNAS++E+EWVEQDE GVYITIR L DGT
Sbjct: 289 ESARSSFSREEEEADHSGEELSVSNASDIETEWVEQDEAGVYITIRALPDGTRELRRVRF 348
Query: 309 XXXXXXXXNAKTWWEENRERIQAQYL 334
NA+ WWE+NR RIQ QYL
Sbjct: 349 SREKFGETNARLWWEQNRARIQQQYL 374
>AT3G14000.1 | Symbols: ATBRXL2, BRX-LIKE2 | DZC (Disease
resistance/zinc finger/chromosome condensation-like
region) domain containing protein | chr3:4631170-4633353
REVERSE LENGTH=374
Length = 374
Score = 270 bits (689), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 168/386 (43%), Positives = 211/386 (54%), Gaps = 64/386 (16%)
Query: 1 MFTCIACTKQSEDEEGGPRESG-----------TPSTKEAVKSLTTQIKDMALKFSGAYK 49
M TCIACTKQ GG ++ TP +K+ +KSLT+QIKDMA+K SGAYK
Sbjct: 1 MLTCIACTKQLNTNNGGSKKQEEDEEEEDRVIETPRSKQ-IKSLTSQIKDMAVKASGAYK 59
Query: 50 QCKPCTGSSSSYKKGHRPYPDFDTISEG--VPYPYMGGASSSSTPAWDFTTSNYPGGRPD 107
CKPC+GSS+ K +R Y D D S Y Y S SSTP R
Sbjct: 60 SCKPCSGSSNQNK--NRSYADSDVASNSGRFRYAYKRAGSGSSTPK---ILGKEMESRLK 114
Query: 108 PRFAGDRTPRGRDSASVCDVVLENEEEPKEWMAQVEPGVHITFTSLPNGGNDLKRIRFSR 167
+G+ TP + V +E E+E KEW+AQVEPGV ITF SLP GGND+KRIRFSR
Sbjct: 115 GFLSGEGTPESMSGRTESTVFMEEEDELKEWVAQVEPGVLITFVSLPEGGNDMKRIRFSR 174
Query: 168 EMFNKWQAQRWWGENYDRIMELYNVQRFNRQS--LNTPPRSEDEQRDSTYSKLTSAQESP 225
EMF+KWQAQ+WW EN+D++MELYNVQ+FN+QS L TPPRSED S++ S + P
Sbjct: 175 EMFDKWQAQKWWAENFDKVMELYNVQQFNQQSVPLPTPPRSED-----GSSRIQSTKNGP 229
Query: 226 M-------------------ISHKDWTPRSQYKPSDYGG----------GGHQFHAGPSM 256
++H+ T ++Q + D G G +
Sbjct: 230 ATPPLNKECSRGKGYASSGSLAHQP-TTQTQSRHHDSSGLATTPKLSSISGTKTETSSVD 288
Query: 257 EPSRPTTS--------SRDEPSISNASEMESEWVEQDEPGVYITIRQLADGTXXXXXXXX 308
E +R + S S +E S+SNAS++E+EWVEQDE GVYITIR L DGT
Sbjct: 289 ESARSSFSREEEEADHSGEELSVSNASDIETEWVEQDEAGVYITIRALPDGTRELRRVRF 348
Query: 309 XXXXXXXXNAKTWWEENRERIQAQYL 334
NA+ WWE+NR RIQ QYL
Sbjct: 349 SREKFGETNARLWWEQNRARIQQQYL 374
>AT1G54180.1 | Symbols: ATBRXL3, BRX-LIKE3 | BREVIS RADIX-like 3 |
chr1:20227697-20229728 FORWARD LENGTH=370
Length = 370
Score = 254 bits (650), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 168/393 (42%), Positives = 212/393 (53%), Gaps = 82/393 (20%)
Query: 1 MFTCIACTKQ----------SEDEEGGPRESGTPSTKEAVKSLTTQIKDMALKFSGAYKQ 50
M TCIACTKQ EDEE G GTP TK+A+KSLT+Q+KDMA+K SGAYK
Sbjct: 1 MLTCIACTKQLNTNNGGSTREEDEEHGV--IGTPRTKQAIKSLTSQLKDMAVKASGAYKN 58
Query: 51 CKPCTGSSSSYKKGHRPYPDFDTISEG--VPYPYMGGASSSSTP-AWDFTTSNYPGGRPD 107
CKPC+G+++ + +R Y D D S+ Y Y +++STP W G +
Sbjct: 59 CKPCSGTTN--RNQNRNYADSDAASDSGRFHYSYQRAGTATSTPKIW--------GNEME 108
Query: 108 PRFAGDRTPRG---RDSASVCDVVLENEEEPKEWMAQVEPGVHITFTSLPNGGNDLKRIR 164
R G + G S +V ++E KEW+AQVEPGV ITF SLP GGNDLKRIR
Sbjct: 109 SRLKGISSEEGTPTSMSGRTESIVFMEDDEVKEWVAQVEPGVLITFVSLPQGGNDLKRIR 168
Query: 165 F--------------------------SREMFNKWQAQRWWGENYDRIMELYNVQRFNRQ 198
F REMFNKWQAQ+WW EN++++MELYNVQ FN+Q
Sbjct: 169 FRSTRFPYYRDQLLLWCRQGWVFWPQNCREMFNKWQAQKWWVENFEKVMELYNVQ-FNQQ 227
Query: 199 S--LNTPPRSEDEQRDSTYSKLTSAQESPMISHKDWTPRSQYKPSDYGGGGHQFHAGP-- 254
S L TPP SED S++ S ++SP+ P + +P G F + P
Sbjct: 228 SVPLQTPPVSED-----GGSQIQSVKDSPVTP-----PLERERPHRNIPGSSGFASTPKL 277
Query: 255 -SMEPSRPTTSSRD------------EPSISNASEMESEWVEQDEPGVYITIRQLADGTX 301
S+ ++ TSS D E S+SNAS+MESEWVEQDEPG+YITIR L DG
Sbjct: 278 SSISGTKTETSSIDGSARSSSVDRSEEVSVSNASDMESEWVEQDEPGIYITIRALPDGNR 337
Query: 302 XXXXXXXXXXXXXXXNAKTWWEENRERIQAQYL 334
+A+ WWE+NR RIQ QYL
Sbjct: 338 ELRRVRFSRDKFGETHARLWWEQNRARIQQQYL 370
>AT5G20540.1 | Symbols: ATBRXL4, BRX-LIKE4, BRXL4 | BREVIS
RADIX-like 4 | chr5:6947943-6951760 FORWARD LENGTH=384
Length = 384
Score = 233 bits (595), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 159/398 (39%), Positives = 207/398 (52%), Gaps = 78/398 (19%)
Query: 1 MFTCIACTKQSEDEEGGPRESGTPSTKEAVKSLTTQIKDMALKFSGAYKQCKPCTG---- 56
M TCIA +K++ DE G + P +K A KSLT+Q+KDMALK SGAY+ C PCT
Sbjct: 1 MLTCIARSKRAGDESSG--QPDDPDSKNA-KSLTSQLKDMALKASGAYRHCTPCTAAQGQ 57
Query: 57 -----------SSSSYKKGHRPYPDFDTISEGVPYPYMGGASSSSTPAWDFTTSNYP--- 102
SSSS K DF++ + + G S+SS A +
Sbjct: 58 GQGQGPIKNNPSSSSVKS------DFESDQR---FKMLYGRSNSSITATAAVAATQQQQP 108
Query: 103 ---GGRPDPRF----AGDRTPRGRDSASVCD-VVLENEEEPKEWMAQVEPGVHITFTSLP 154
G + R +G+ TP+ + D +V E+EPKEW+AQVEPGV ITF SLP
Sbjct: 109 RVWGKEMEARLKGISSGEATPKSASGRNRVDPIVFVEEKEPKEWVAQVEPGVLITFVSLP 168
Query: 155 NGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQS--LNTPPRSEDEQRD 212
GGNDLKRIRFSR+MFNK QAQRWW +NYD++MELYNVQ+ +RQ+ L TPPRSEDE
Sbjct: 169 GGGNDLKRIRFSRDMFNKLQAQRWWADNYDKVMELYNVQKLSRQAFPLPTPPRSEDENAK 228
Query: 213 STYSKLTSAQESPMISHKDWTPRSQYKPSDYGG------------GGHQFHAG------- 253
Y + P+ +K+ PR+ ++P QF+
Sbjct: 229 VEYHPEDTPATPPL--NKERLPRTIHRPPGLAAYSSSDSLDHNSMQSQQFYDSGLLNSTP 286
Query: 254 --PSMEPSRPTTSSRD---------------EPSISNASEMESEWVEQDEPGVYITIRQL 296
S+ ++ TSS D E S+SNAS++++EWVEQDEPGVYITI+ L
Sbjct: 287 KVSSISVAKTETSSIDASIRSSSSRDADRSEEMSVSNASDVDNEWVEQDEPGVYITIKVL 346
Query: 297 ADGTXXXXXXXXXXXXXXXXNAKTWWEENRERIQAQYL 334
G +A+ WWEENR RI QYL
Sbjct: 347 PGGKRELRRVRFSRERFGEMHARLWWEENRARIHEQYL 384
>AT2G21030.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Disease
resistance/zinc finger/chromosome condensation-like
region (InterPro:IPR013591); BEST Arabidopsis thaliana
protein match is: DZC (Disease resistance/zinc
finger/chromosome condensation-like region) domain
containing protein (TAIR:AT1G31880.1); Has 250 Blast
hits to 250 proteins in 17 species: Archae - 0; Bacteria
- 0; Metazoa - 0; Fungi - 0; Plants - 250; Viruses - 0;
Other Eukaryotes - 0 (source: NCBI BLink). |
chr2:9024904-9025578 REVERSE LENGTH=158
Length = 158
Score = 187 bits (474), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 98/153 (64%), Positives = 118/153 (77%), Gaps = 21/153 (13%)
Query: 147 HITFTSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQSLNTPPRS 206
HITF SLP GGNDLKRIRFSREM+NKWQAQR WGENYD+I+ELYNVQRFNRQ+L TP RS
Sbjct: 13 HITFASLPTGGNDLKRIRFSREMYNKWQAQRRWGENYDKIVELYNVQRFNRQALQTPARS 72
Query: 207 EDE-QRDSTYSKLTSAQESPMISHKDWTPRSQYKP------------SDYGGGGHQFHAG 253
+D+ QRDSTYSK+ SA+ES KDWTPR ++P S+YG G +H G
Sbjct: 73 DDQSQRDSTYSKMDSARES-----KDWTPRHNFRPPGSVPHHFYGGSSNYGPGS--YHGG 125
Query: 254 PSMEPSRPTTSSRDE-PSISNASEMESEWVEQD 285
P M+ +R TTSSRD+ PS+SNASEM++EW+E+D
Sbjct: 126 PPMDAARTTTSSRDDPPSMSNASEMQAEWIEED 158
>AT5G12350.1 | Symbols: | Regulator of chromosome condensation (RCC1)
family with FYVE zinc finger domain |
chr5:3995789-4000545 FORWARD LENGTH=1075
Length = 1075
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 60/184 (32%), Positives = 90/184 (48%), Gaps = 32/184 (17%)
Query: 25 STKEAVKSLTTQIKDMALKFSGAYKQCKPCTGSSSSYKKGHRPYPDFDTISEG----VPY 80
+ KE +KSLT Q+KDMA + GS+ + K P ++ P+
Sbjct: 918 AAKEVIKSLTAQLKDMAERLP---------VGSARTVKSP----PSLNSFGSSPGRIDPF 964
Query: 81 PYMGGASSSSTPAWDFTTSNYPGGRPDPRFA-GDRTPRGRDSASVCDVVLENEEEPKEWM 139
+ A+S + TT + G P F G+ T R+ KEW+
Sbjct: 965 NILNQANSQESEPNGITTPMFSNGTMTPAFGNGEATNEARNE--------------KEWV 1010
Query: 140 AQVEPGVHITFTSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFNRQS 199
Q EPGV+IT T+L G DLKR+RFSR+ F++ QA++WW +N R+ E YNV+ ++ S
Sbjct: 1011 EQDEPGVYITLTALAGGARDLKRVRFSRKRFSEIQAEQWWADNRGRVYEQYNVRMVDKAS 1070
Query: 200 LNTP 203
+ P
Sbjct: 1071 EDLP 1074
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 32/62 (51%)
Query: 272 SNASEMESEWVEQDEPGVYITIRQLADGTXXXXXXXXXXXXXXXXNAKTWWEENRERIQA 331
+N + E EWVEQDEPGVYIT+ LA G A+ WW +NR R+
Sbjct: 1000 TNEARNEKEWVEQDEPGVYITLTALAGGARDLKRVRFSRKRFSEIQAEQWWADNRGRVYE 1059
Query: 332 QY 333
QY
Sbjct: 1060 QY 1061
>AT5G19420.1 | Symbols: | Regulator of chromosome condensation (RCC1)
family with FYVE zinc finger domain |
chr5:6547945-6552866 REVERSE LENGTH=1105
Length = 1105
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 90/178 (50%), Gaps = 20/178 (11%)
Query: 25 STKEAVKSLTTQIKDMALKF-SGAYKQCK-PCTGSSSSYKKGHRPYPDFDTISEGVPYPY 82
+ KE +KSLT Q+KDMA + G+ + K P S S PD+ S
Sbjct: 922 AAKEVIKSLTAQLKDMAERLPVGSARTVKSPSLNSFGSS-------PDYAAPSSNT---- 970
Query: 83 MGGASSSSTPAWDFTTS-NYPGGRPDPRF-AGDRTPRGRDSASVCDVV--LENEEEPK-- 136
+ +S T + TT + G P F +G + +A + + E EP+
Sbjct: 971 LNRPNSRETDSDSLTTVPMFSNGTSTPVFDSGSYRQQANHAAEAINRISTRSKESEPRNE 1030
Query: 137 -EWMAQVEPGVHITFTSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQ 193
EW+ Q EPGV+IT T+L G DLKR+RFSR+ F++ QA+ WW EN R+ E YNV+
Sbjct: 1031 NEWVEQDEPGVYITLTALAGGARDLKRVRFSRKRFSEKQAEEWWAENRGRVYEQYNVR 1088
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 30/56 (53%)
Query: 278 ESEWVEQDEPGVYITIRQLADGTXXXXXXXXXXXXXXXXNAKTWWEENRERIQAQY 333
E+EWVEQDEPGVYIT+ LA G A+ WW ENR R+ QY
Sbjct: 1030 ENEWVEQDEPGVYITLTALAGGARDLKRVRFSRKRFSEKQAEEWWAENRGRVYEQY 1085
>AT5G19420.2 | Symbols: | Regulator of chromosome condensation (RCC1)
family with FYVE zinc finger domain |
chr5:6547945-6552981 REVERSE LENGTH=1139
Length = 1139
Score = 83.2 bits (204), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/178 (35%), Positives = 90/178 (50%), Gaps = 20/178 (11%)
Query: 25 STKEAVKSLTTQIKDMALKF-SGAYKQCK-PCTGSSSSYKKGHRPYPDFDTISEGVPYPY 82
+ KE +KSLT Q+KDMA + G+ + K P S S PD+ S
Sbjct: 956 AAKEVIKSLTAQLKDMAERLPVGSARTVKSPSLNSFGSS-------PDYAAPSSNT---- 1004
Query: 83 MGGASSSSTPAWDFTTS-NYPGGRPDPRF-AGDRTPRGRDSASVCDVV--LENEEEPK-- 136
+ +S T + TT + G P F +G + +A + + E EP+
Sbjct: 1005 LNRPNSRETDSDSLTTVPMFSNGTSTPVFDSGSYRQQANHAAEAINRISTRSKESEPRNE 1064
Query: 137 -EWMAQVEPGVHITFTSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQ 193
EW+ Q EPGV+IT T+L G DLKR+RFSR+ F++ QA+ WW EN R+ E YNV+
Sbjct: 1065 NEWVEQDEPGVYITLTALAGGARDLKRVRFSRKRFSEKQAEEWWAENRGRVYEQYNVR 1122
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 30/56 (53%)
Query: 278 ESEWVEQDEPGVYITIRQLADGTXXXXXXXXXXXXXXXXNAKTWWEENRERIQAQY 333
E+EWVEQDEPGVYIT+ LA G A+ WW ENR R+ QY
Sbjct: 1064 ENEWVEQDEPGVYITLTALAGGARDLKRVRFSRKRFSEKQAEEWWAENRGRVYEQY 1119
>AT1G69710.1 | Symbols: | Regulator of chromosome condensation (RCC1)
family with FYVE zinc finger domain |
chr1:26222325-26226530 FORWARD LENGTH=1041
Length = 1041
Score = 74.7 bits (182), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 50/169 (29%), Positives = 79/169 (46%), Gaps = 34/169 (20%)
Query: 25 STKEAVKSLTTQIKDMALKFSGAYKQCKPCTGSSSSYKKGHRPYPDFDTISEGVPYPYM- 83
S KE ++SLTTQ+K+MA K S S S H +T+++ ++
Sbjct: 903 SAKEVIRSLTTQLKEMAEKQS---------QKDSISTNSKHTDKEKSETVTQTSNQTHIR 953
Query: 84 GGASSSSTPAWDFTTSNYPGGRPDPRFAGDRTPRGRDSASVCDVVLENEEEPKEWMAQVE 143
S S + T+ ++ G + + E + Q E
Sbjct: 954 SMVSQDSQNENNLTSKSFANGH------------------------RKQNDKPEKVVQDE 989
Query: 144 PGVHITFTSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNV 192
PGV++T SLP GG +LKR+RFSR+ F + QA++WWGEN ++ E +N+
Sbjct: 990 PGVYLTLLSLPGGGTELKRVRFSRKQFTEEQAEKWWGENGAKVCERHNI 1038
>AT1G65920.1 | Symbols: | Regulator of chromosome condensation (RCC1)
family with FYVE zinc finger domain |
chr1:24525267-24529204 REVERSE LENGTH=1006
Length = 1006
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%)
Query: 130 ENEEEPKEWMAQVEPGVHITFTSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMEL 189
E ++ E + Q EPGV+ITFT+LP G LKR+RFSR+ F++ +AQRWW E +
Sbjct: 942 ETQDSSAEQVEQYEPGVYITFTALPCGQKTLKRVRFSRKRFSEKEAQRWWEEKQVLVYNK 1001
Query: 190 YNVQ 193
Y+ +
Sbjct: 1002 YDAE 1005
>AT5G42140.1 | Symbols: | Regulator of chromosome condensation (RCC1)
family with FYVE zinc finger domain |
chr5:16837547-16841640 REVERSE LENGTH=1073
Length = 1073
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%)
Query: 137 EWMAQVEPGVHITFTSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFN 196
EW+ Q EPGV+IT +L +G DLKR+RFSR F + QA+ WW EN +R+ E YN++ +
Sbjct: 1000 EWIEQYEPGVYITLLALGDGTRDLKRVRFSRRRFREQQAETWWSENRERVYEKYNIRGTD 1059
Query: 197 RQSLNTPPRSEDE 209
R S+ T P S+ +
Sbjct: 1060 RSSVATSPISQSQ 1072
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 276 EMESEWVEQDEPGVYITIRQLADGTXXXXXXXXXXXXXXXXNAKTWWEENRERIQAQY 333
++E+EW+EQ EPGVYIT+ L DGT A+TWW ENRER+ +Y
Sbjct: 996 QVEAEWIEQYEPGVYITLLALGDGTRDLKRVRFSRRRFREQQAETWWSENRERVYEKY 1053
>AT1G76950.1 | Symbols: PRAF1 | Regulator of chromosome condensation
(RCC1) family with FYVE zinc finger domain |
chr1:28906952-28911325 FORWARD LENGTH=1103
Length = 1103
Score = 62.0 bits (149), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 20/115 (17%)
Query: 233 TPRSQYKPSDYGGGGHQFHAGPSMEPSRPTTSSRDEP--------------SISNASEME 278
TPR+ + S+ + A P + S S R EP ++N +++E
Sbjct: 969 TPRASERNSN------AYPADPRLSSSGSVISERIEPFQFQNNSDNGSSQTGVNNTNQVE 1022
Query: 279 SEWVEQDEPGVYITIRQLADGTXXXXXXXXXXXXXXXXNAKTWWEENRERIQAQY 333
+EW+EQ EPGVYIT+ L DGT A+TWW ENRE++ +Y
Sbjct: 1023 AEWIEQYEPGVYITLVALHDGTRDLRRVRFSRRRFGEHQAETWWSENREKVYEKY 1077
Score = 56.2 bits (134), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/76 (42%), Positives = 49/76 (64%)
Query: 137 EWMAQVEPGVHITFTSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELYNVQRFN 196
EW+ Q EPGV+IT +L +G DL+R+RFSR F + QA+ WW EN +++ E YNV+
Sbjct: 1024 EWIEQYEPGVYITLVALHDGTRDLRRVRFSRRRFGEHQAETWWSENREKVYEKYNVRVSE 1083
Query: 197 RQSLNTPPRSEDEQRD 212
+ + + R DE+ +
Sbjct: 1084 KSTASQTHRDRDEEEE 1099
>AT4G16990.5 | Symbols: RLM3 | disease resistance protein (TIR-NBS
class), putative | chr4:9561113-9565225 FORWARD
LENGTH=637
Length = 637
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 84/213 (39%), Gaps = 40/213 (18%)
Query: 117 RGRDSASVCDVVLENEEEPKEWMAQVEPGVHITFTSLPNGGNDLKRIRFSREMFNKWQAQ 176
+G+D + C N + EW+ + GV I +G LK + ++R M QA+
Sbjct: 258 KGQDYVA-CLTNGSNSQVKAEWI-HLALGVSILLNIRSDGTTILKHLSYNRSMAQ--QAK 313
Query: 177 RWWGENYDRIMELYNVQRFNRQSLNTPPRSEDEQRDSTYSKLTSAQESPMISHKDWTPRS 236
WW EN +R+ + YN+ + S + STY + +++
Sbjct: 314 IWWYENLERVCKKYNICGID---------SSTDGGGSTYGQCSNS--------------- 349
Query: 237 QYKPSDYGGGGHQFHAGPSMEPSRPTTSSRDEPSISNASEMESEWVEQDEPGVYITIRQL 296
QF P TS++ AS++E E +E EP VYIT
Sbjct: 350 ------------QFQRNMDASPGGNKTSNQSTKDSPRASQVEKEKIEYCEPHVYITPAIF 397
Query: 297 ADGTXXXXXXXXXXXXXXXXNAKTWWEENRERI 329
+DGT +AKTWW EN E++
Sbjct: 398 SDGTRAPKYVESSRRVTQVHHAKTWWPENCEKV 430
>AT4G16990.1 | Symbols: RLM3 | disease resistance protein (TIR-NBS
class), putative | chr4:9560155-9564616 FORWARD
LENGTH=670
Length = 670
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 91/213 (42%), Gaps = 40/213 (18%)
Query: 117 RGRDSASVCDVVLENEEEPKEWMAQVEPGVHITFTSLPNGGNDLKRIRFSREMFNKWQAQ 176
+G+D + C N + EW+ + GV I +G LK + ++R M QA+
Sbjct: 416 KGQDYVA-CLTNGSNSQVKAEWI-HLALGVSILLNIRSDGTTILKHLSYNRSMAQ--QAK 471
Query: 177 RWWGENYDRIMELYNVQRFNRQSLNTPPRSEDEQRDSTYSKLTSAQESPMISHKDWTPRS 236
WW EN +R+ + YN+ + S + STY + +++Q + D +P
Sbjct: 472 IWWYENLERVCKKYNICGID---------SSTDGGGSTYGQCSNSQ---FQRNMDASP-- 517
Query: 237 QYKPSDYGGGGHQFHAGPSMEPSRPTTSSRDEPSISNASEMESEWVEQDEPGVYITIRQL 296
GG++ S++D P AS++E E +E EP VYIT
Sbjct: 518 ---------GGNK----------TSNQSTKDSP---RASQVEKEKIEYCEPHVYITPAIF 555
Query: 297 ADGTXXXXXXXXXXXXXXXXNAKTWWEENRERI 329
+DGT +AKTWW EN E++
Sbjct: 556 SDGTRAPKYVESSRRVTQVHHAKTWWPENCEKV 588
>AT3G23270.1 | Symbols: | Regulator of chromosome condensation (RCC1)
family with FYVE zinc finger domain |
chr3:8316436-8320337 FORWARD LENGTH=1045
Length = 1045
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 37/55 (67%)
Query: 136 KEWMAQVEPGVHITFTSLPNGGNDLKRIRFSREMFNKWQAQRWWGENYDRIMELY 190
KE Q EPGV++T+ NG +R+RFS++ F++ QA+ WW +N DR+++ Y
Sbjct: 948 KESKEQFEPGVYVTYEVDMNGNKIFRRVRFSKKRFDEHQAEDWWTKNKDRLLKCY 1002
>AT4G16990.4 | Symbols: RLM3 | disease resistance protein (TIR-NBS
class), putative | chr4:9561113-9565225 FORWARD
LENGTH=643
Length = 643
Score = 55.5 bits (132), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 84/214 (39%), Gaps = 41/214 (19%)
Query: 117 RGRDSASVCDVVLENEEEPKEWMAQVEPGVHITFTSLPNGGNDLKRIRFSREMFNKWQAQ 176
+G+D + C N + EW+ + GV I +G LK + ++R M QA+
Sbjct: 258 KGQDYVA-CLTNGSNSQVKAEWI-HLALGVSILLNIRSDGTTILKHLSYNRSMAQ--QAK 313
Query: 177 RWWGENYDRIMELYNVQRFNRQSLNTPPRSEDEQRDSTYSKLTSAQESPMISHKDWTPRS 236
WW EN +R+ + YN+ + S + STY + +++
Sbjct: 314 IWWYENLERVCKKYNICGID---------SSTDGGGSTYGQCSNS--------------- 349
Query: 237 QYKPSDYGGGGHQFHAGPSMEPSRPTTSSRDEPSISNASEMESEWVEQDEPGVYITIRQL 296
QF P TS++ AS++E E +E EP VYIT
Sbjct: 350 ------------QFQRNMDASPGGNKTSNQSTKDSPRASQVEKEKIEYCEPHVYITPAIF 397
Query: 297 ADGTXX-XXXXXXXXXXXXXXNAKTWWEENRERI 329
+DGT +AKTWW EN E++
Sbjct: 398 SDGTRAPKYVESSSRRVTQVHHAKTWWPENCEKV 431
>AT4G16990.3 | Symbols: RLM3 | disease resistance protein (TIR-NBS
class), putative | chr4:9561113-9565225 FORWARD
LENGTH=638
Length = 638
Score = 55.1 bits (131), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 84/214 (39%), Gaps = 41/214 (19%)
Query: 117 RGRDSASVCDVVLENEEEPKEWMAQVEPGVHITFTSLPNGGNDLKRIRFSREMFNKWQAQ 176
+G+D + C N + EW+ + GV I +G LK + ++R M QA+
Sbjct: 258 KGQDYVA-CLTNGSNSQVKAEWI-HLALGVSILLNIRSDGTTILKHLSYNRSMAQ--QAK 313
Query: 177 RWWGENYDRIMELYNVQRFNRQSLNTPPRSEDEQRDSTYSKLTSAQESPMISHKDWTPRS 236
WW EN +R+ + YN+ + S + STY + +++
Sbjct: 314 IWWYENLERVCKKYNICGID---------SSTDGGGSTYGQCSNS--------------- 349
Query: 237 QYKPSDYGGGGHQFHAGPSMEPSRPTTSSRDEPSISNASEMESEWVEQDEPGVYITIRQL 296
QF P TS++ AS++E E +E EP VYIT
Sbjct: 350 ------------QFQRNMDASPGGNKTSNQSTKDSPRASQVEKEKIEYCEPHVYITPAIF 397
Query: 297 ADGTXX-XXXXXXXXXXXXXXNAKTWWEENRERI 329
+DGT +AKTWW EN E++
Sbjct: 398 SDGTRAPKYVESSSRRVTQVHHAKTWWPENCEKV 431
>AT4G16990.2 | Symbols: RLM3 | disease resistance protein (TIR-NBS
class), putative | chr4:9560155-9565225 FORWARD
LENGTH=796
Length = 796
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 54/214 (25%), Positives = 84/214 (39%), Gaps = 41/214 (19%)
Query: 117 RGRDSASVCDVVLENEEEPKEWMAQVEPGVHITFTSLPNGGNDLKRIRFSREMFNKWQAQ 176
+G+D + C N + EW+ + GV I +G LK + ++R M QA+
Sbjct: 416 KGQDYVA-CLTNGSNSQVKAEWI-HLALGVSILLNIRSDGTTILKHLSYNRSMAQ--QAK 471
Query: 177 RWWGENYDRIMELYNVQRFNRQSLNTPPRSEDEQRDSTYSKLTSAQESPMISHKDWTPRS 236
WW EN +R+ + YN+ + S + STY + +++
Sbjct: 472 IWWYENLERVCKKYNICGID---------SSTDGGGSTYGQCSNS--------------- 507
Query: 237 QYKPSDYGGGGHQFHAGPSMEPSRPTTSSRDEPSISNASEMESEWVEQDEPGVYITIRQL 296
QF P TS++ AS++E E +E EP VYIT
Sbjct: 508 ------------QFQRNMDASPGGNKTSNQSTKDSPRASQVEKEKIEYCEPHVYITPAIF 555
Query: 297 ADGTXX-XXXXXXXXXXXXXXNAKTWWEENRERI 329
+DGT +AKTWW EN E++
Sbjct: 556 SDGTRAPKYVESSSRRVTQVHHAKTWWPENCEKV 589