Miyakogusa Predicted Gene
- Lj0g3v0228419.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0228419.1 Non Chatacterized Hit- tr|I1M451|I1M451_SOYBN
Uncharacterized protein OS=Glycine max PE=4 SV=1,79.11,0,helicase
superfamily c-terminal domain,Helicase, C-terminal; no
description,NULL; Helicase_C,Helicas,CUFF.14908.1
(160 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domai... 251 2e-67
AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosph... 219 9e-58
AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helic... 144 4e-35
AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helic... 143 5e-35
AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helic... 137 2e-33
AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helic... 137 2e-33
AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domai... 137 4e-33
AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein / ... 136 5e-33
AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein / ... 136 5e-33
AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein | chr5:75... 134 3e-32
AT5G05130.1 | Symbols: | DNA/RNA helicase protein | chr5:151217... 126 8e-30
AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDD... 107 4e-24
AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containi... 106 8e-24
AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic ac... 101 3e-22
AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA ... 100 3e-22
AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containi... 100 5e-22
AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 | c... 98 3e-21
AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 | c... 98 3e-21
AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 97 4e-21
AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 97 5e-21
AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |... 97 5e-21
AT5G19310.1 | Symbols: | Homeotic gene regulator | chr5:6498906... 95 2e-20
AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator | chr3:... 95 2e-20
AT3G57300.2 | Symbols: INO80 | INO80 ortholog | chr3:21199612-21... 94 4e-20
AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog | chr3:21... 94 4e-20
AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helic... 89 1e-18
AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 | chr... 89 1e-18
AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORW... 89 1e-18
AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 87 3e-18
AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription re... 87 3e-18
AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 | chr5:25... 87 4e-18
AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 | chr2:8129... 87 6e-18
AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling facto... 86 8e-18
AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 | chr3:6652799-6... 86 1e-17
AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 ... 86 1e-17
AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helic... 85 2e-17
AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 85 2e-17
AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 85 2e-17
AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside ... 85 2e-17
AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helic... 85 3e-17
AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicases... 82 1e-16
AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 | chr2:5544... 81 3e-16
AT3G54460.1 | Symbols: | SNF2 domain-containing protein / helic... 79 1e-15
AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside triph... 77 4e-15
AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside triph... 77 4e-15
AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside triph... 77 4e-15
AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleosid... 77 4e-15
AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin re... 77 4e-15
AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putat... 77 5e-15
AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putat... 77 5e-15
AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 | chr1:16... 72 1e-13
AT5G07810.1 | Symbols: | SNF2 domain-containing protein / helic... 65 3e-11
AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containin... 61 4e-10
AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 | chr3:88... 61 4e-10
AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 | chr2:91... 60 6e-10
AT3G42670.1 | Symbols: CHR38, CLSY | chromatin remodeling 38 | c... 59 2e-09
AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 | chr5:68... 57 5e-09
>AT1G05120.1 | Symbols: | Helicase protein with RING/U-box domain |
chr1:1471624-1476067 REVERSE LENGTH=833
Length = 833
Score = 251 bits (640), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 115/158 (72%), Positives = 136/158 (86%)
Query: 1 MIQRDGSAKGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCR 60
M++RDGSAK IVFSQFTSFLDLINY+L K GVSCVQL GSM++ ARD AI +F +DPDCR
Sbjct: 674 MVERDGSAKAIVFSQFTSFLDLINYTLGKCGVSCVQLVGSMTMAARDTAINKFKEDPDCR 733
Query: 61 IFLLSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTI 120
+FL+SLKA GVALNLTVASHVF+M+PWWNP VE+QAQDRIHRIGQ KPIRVV+FI ENT+
Sbjct: 734 VFLMSLKAGGVALNLTVASHVFMMDPWWNPAVERQAQDRIHRIGQYKPIRVVRFIIENTV 793
Query: 121 EERILKLQQQKEAVSEGLIDGSSEALGRLKLSEMINLF 158
EERIL+LQ++KE V EG + GS EA+G+L +M LF
Sbjct: 794 EERILRLQKKKELVFEGTVGGSQEAIGKLTEEDMRFLF 831
>AT1G02670.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:576046-580299
FORWARD LENGTH=678
Length = 678
Score = 219 bits (557), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 100/146 (68%), Positives = 123/146 (84%)
Query: 1 MIQRDGSAKGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCR 60
M++RD SAK IVFSQFTSFLDLI+Y+L KSGVSCVQL GSMS A+DAA+K F ++PDCR
Sbjct: 519 MVERDWSAKAIVFSQFTSFLDLISYALGKSGVSCVQLVGSMSKAAKDAALKNFKEEPDCR 578
Query: 61 IFLLSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTI 120
+ L+SL+A GVALNLT ASHVF+M+PWWNP VE+QAQDRIHRIGQ KP+RVV+FI E T+
Sbjct: 579 VLLMSLQAGGVALNLTAASHVFMMDPWWNPAVERQAQDRIHRIGQCKPVRVVRFIMEKTV 638
Query: 121 EERILKLQQQKEAVSEGLIDGSSEAL 146
EE+IL LQ++KE + E + S EA+
Sbjct: 639 EEKILTLQKKKEDLFESTLGDSEEAV 664
>AT1G50410.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr1:18672828-18677365 FORWARD LENGTH=981
Length = 981
Score = 144 bits (362), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 103/156 (66%), Gaps = 4/156 (2%)
Query: 6 GSAKGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCRIFLLS 65
G K I+FSQ+T LDL+ SL+++ + +L+G+MSL ARD A+K F++DPD ++ ++S
Sbjct: 825 GPIKTIIFSQWTGMLDLVELSLIENSIEFRRLDGTMSLIARDRAVKEFSNDPDVKVMIMS 884
Query: 66 LKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERIL 125
LKA + LN+ A HV L++ WWNP E QA DR HRIGQ +P+ V + +NT+E+RIL
Sbjct: 885 LKAGNLGLNMIAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKNTVEDRIL 944
Query: 126 KLQQQKE---AVSEGLIDGSSEALGRLKLSEMINLF 158
LQ++K A + G G S A RL + ++ LF
Sbjct: 945 ALQEEKRKMVASAFGEDHGGSSAT-RLTVDDLKYLF 979
>AT3G20010.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr3:6971352-6976340 FORWARD LENGTH=1047
Length = 1047
Score = 143 bits (360), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 70/156 (44%), Positives = 103/156 (66%), Gaps = 4/156 (2%)
Query: 6 GSAKGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCRIFLLS 65
G+ K I+FSQ+T LDL+ +++SG+ +L+G+MSL ARD A+K F+ PD ++ L+S
Sbjct: 891 GAVKTIIFSQWTGMLDLVELRILESGIEFRRLDGTMSLAARDRAVKEFSKKPDVKVMLMS 950
Query: 66 LKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERIL 125
LKA + LN+ A HV L++ WWNP E QA DR HRIGQ +P+ V + ++T+E+RIL
Sbjct: 951 LKAGNLGLNMVAACHVILLDLWWNPTTEDQAIDRAHRIGQTRPVTVTRITIKDTVEDRIL 1010
Query: 126 KLQQQKE---AVSEGLIDGSSEALGRLKLSEMINLF 158
KLQ++K A + G G S A RL + ++ LF
Sbjct: 1011 KLQEEKRTMVASAFGEEHGGSSAT-RLTVDDLKYLF 1045
>AT1G11100.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr1:3703934-3709302 REVERSE LENGTH=1226
Length = 1226
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 87/123 (70%)
Query: 9 KGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCRIFLLSLKA 68
K IVF+Q+T LDL+ L SG+ + +G M++ ARDAA++ FN PD + ++SLKA
Sbjct: 1073 KAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPDVSVMIMSLKA 1132
Query: 69 AGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQ 128
A + LN+ A HV +++ WWNP E QA DR HRIGQ +P++VV+F ++T+E+RIL LQ
Sbjct: 1133 ASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQTRPVKVVRFTVKDTVEDRILALQ 1192
Query: 129 QQK 131
Q+K
Sbjct: 1193 QKK 1195
>AT1G11100.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related |
chr1:3703934-3709302 REVERSE LENGTH=1269
Length = 1269
Score = 137 bits (346), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 60/123 (48%), Positives = 87/123 (70%)
Query: 9 KGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCRIFLLSLKA 68
K IVF+Q+T LDL+ L SG+ + +G M++ ARDAA++ FN PD + ++SLKA
Sbjct: 1116 KAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPDVSVMIMSLKA 1175
Query: 69 AGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQ 128
A + LN+ A HV +++ WWNP E QA DR HRIGQ +P++VV+F ++T+E+RIL LQ
Sbjct: 1176 ASLGLNMVAACHVIMLDLWWNPTTEDQAIDRAHRIGQTRPVKVVRFTVKDTVEDRILALQ 1235
Query: 129 QQK 131
Q+K
Sbjct: 1236 QKK 1238
>AT5G43530.1 | Symbols: | Helicase protein with RING/U-box domain |
chr5:17489327-17494830 FORWARD LENGTH=1277
Length = 1277
Score = 137 bits (344), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 71/158 (44%), Positives = 104/158 (65%), Gaps = 3/158 (1%)
Query: 2 IQRDGSA-KGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCR 60
I++ GS K IVFSQ+TSFLDL+ L + G ++ +G ++ R+ +K FN+
Sbjct: 1121 IKKSGSGEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQKGREKVLKEFNETKQKT 1180
Query: 61 IFLLSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTI 120
I L+SLKA GV LNLT AS VFLM+PWWNP VE+QA RIHRIGQ + + V +FI ++T+
Sbjct: 1181 ILLMSLKAGGVGLNLTAASSVFLMDPWWNPAVEEQAIMRIHRIGQKRTVFVRRFIVKDTV 1240
Query: 121 EERILKLQQQKEAVSEGLIDGSSEALGRLKLSEMINLF 158
EER+ ++Q +K+ + G + + E + +L E+ LF
Sbjct: 1241 EERMQQVQARKQRMIAGAL--TDEEVRSARLEELKMLF 1276
>AT1G61140.3 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22539756 REVERSE
LENGTH=1122
Length = 1122
Score = 136 bits (343), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 88/123 (71%)
Query: 9 KGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCRIFLLSLKA 68
K IVFSQ+T L+L+ SLV S + +L+G+MS+ ARD A++ FN P+ + ++SLKA
Sbjct: 967 KAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLPEVTVMIMSLKA 1026
Query: 69 AGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQ 128
A + LN+ A HV +++ WWNP E QA DR HRIGQ +P+ VV+F ++T+E+RIL LQ
Sbjct: 1027 ASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVEDRILALQ 1086
Query: 129 QQK 131
Q+K
Sbjct: 1087 QKK 1089
>AT1G61140.1 | Symbols: EDA16 | SNF2 domain-containing protein /
helicase domain-containing protein / zinc finger
protein-related | chr1:22535038-22540610 REVERSE
LENGTH=1280
Length = 1280
Score = 136 bits (343), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 61/123 (49%), Positives = 88/123 (71%)
Query: 9 KGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCRIFLLSLKA 68
K IVFSQ+T L+L+ SLV S + +L+G+MS+ ARD A++ FN P+ + ++SLKA
Sbjct: 1125 KAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLPEVTVMIMSLKA 1184
Query: 69 AGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQ 128
A + LN+ A HV +++ WWNP E QA DR HRIGQ +P+ VV+F ++T+E+RIL LQ
Sbjct: 1185 ASLGLNMVAACHVLMLDLWWNPTTEDQAIDRAHRIGQTRPVTVVRFTVKDTVEDRILALQ 1244
Query: 129 QQK 131
Q+K
Sbjct: 1245 QKK 1247
>AT5G22750.1 | Symbols: RAD5 | DNA/RNA helicase protein |
chr5:7565374-7570871 REVERSE LENGTH=1029
Length = 1029
Score = 134 bits (337), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 61/136 (44%), Positives = 95/136 (69%)
Query: 4 RDGSAKGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCRIFL 63
R +K I+FSQ+T+FLDL+ L ++ S V+L+G++S R+ +K F++D + L
Sbjct: 876 RSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQQREKVLKEFSEDGSILVLL 935
Query: 64 LSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEER 123
+SLKA GV +NLT AS+ F+M+PWWNP VE+QA RIHRIGQ K +++ +FI + T+EER
Sbjct: 936 MSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKEVKIRRFIVKGTVEER 995
Query: 124 ILKLQQQKEAVSEGLI 139
+ +Q +K+ + G +
Sbjct: 996 MEAVQARKQRMISGAL 1011
>AT5G05130.1 | Symbols: | DNA/RNA helicase protein |
chr5:1512173-1514918 FORWARD LENGTH=862
Length = 862
Score = 126 bits (316), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 92/136 (67%), Gaps = 4/136 (2%)
Query: 3 QRDGSAKGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCR-- 60
Q + + K +VFSQF L L+ L +G + ++L+G+M++ R I F + P+
Sbjct: 702 QENPNTKSVVFSQFRKMLLLLETPLKAAGFTILRLDGAMTVKKRTQVIGEFGN-PELTGP 760
Query: 61 -IFLLSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENT 119
+ L SLKA+G +NLT AS V+L +PWWNP VE+QA DRIHRIGQ + +++++ I N+
Sbjct: 761 VVLLASLKASGTGINLTAASRVYLFDPWWNPAVEEQAMDRIHRIGQKQEVKMIRMIARNS 820
Query: 120 IEERILKLQQQKEAVS 135
IEER+L+LQQ+K+ ++
Sbjct: 821 IEERVLELQQKKKNLA 836
>AT5G66750.1 | Symbols: DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1
| chromatin remodeling 1 | chr5:26649050-26652869
FORWARD LENGTH=764
Length = 764
Score = 107 bits (266), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 74/119 (62%), Gaps = 1/119 (0%)
Query: 9 KGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPD-CRIFLLSLK 67
K ++FSQ+T LD+++Y + G +++GS+ L R IK F+D+ C IFLLS +
Sbjct: 542 KVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTR 601
Query: 68 AAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILK 126
A G+ +NLT A L + WNP ++ QA DR HRIGQ KP+ V + T +IE R+LK
Sbjct: 602 AGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSIETRVLK 660
>AT3G12810.1 | Symbols: PIE1, SRCAP, chr13 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr3:4065636-4073992 FORWARD LENGTH=2055
Length = 2055
Score = 106 bits (264), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 49/126 (38%), Positives = 77/126 (61%)
Query: 6 GSAKGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCRIFLLS 65
G + ++F+Q T LD++ + G + ++L+GS R ++RFN +P +F+LS
Sbjct: 1090 GGHRALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNTNPKIFLFILS 1149
Query: 66 LKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERIL 125
++ GV +NL A V + WNP ++QQAQDR HRIGQ + + + + I+E+TIEE IL
Sbjct: 1150 TRSGGVGINLVGADTVIFYDSDWNPAMDQQAQDRCHRIGQTREVHIYRLISESTIEENIL 1209
Query: 126 KLQQQK 131
K QK
Sbjct: 1210 KKANQK 1215
>AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20104153 FORWARD
LENGTH=2129
Length = 2129
Score = 101 bits (251), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 90/157 (57%), Gaps = 3/157 (1%)
Query: 6 GSAKGIVFSQFTSFLDLINYSLVKS---GVSCVQLNGSMSLTARDAAIKRFNDDPDCRIF 62
G + ++F+Q + LD+I L ++ V+ ++L+GS+ R +K FN DP +
Sbjct: 1860 GQHRVLIFAQHKALLDIIEKDLFQAHMKSVTYMRLDGSVVPEKRFEIVKAFNSDPTIDVL 1919
Query: 63 LLSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEE 122
LL+ G+ LNLT A + ME WNP + QA DR HR+GQ + + V + I T+EE
Sbjct: 1920 LLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQAMDRAHRLGQKRVVNVHRLIMRGTLEE 1979
Query: 123 RILKLQQQKEAVSEGLIDGSSEALGRLKLSEMINLFG 159
+++ LQ+ K +V+ +I+ + ++ + ++++LF
Sbjct: 1980 KVMSLQKFKVSVANTVINAENASMKTMNTDQLLDLFA 2016
>AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA
binding;ATP binding;nucleic acid
binding;binding;helicases;ATP binding;DNA
binding;helicases | chr3:20092361-20103807 FORWARD
LENGTH=2045
Length = 2045
Score = 100 bits (250), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 90/157 (57%), Gaps = 3/157 (1%)
Query: 6 GSAKGIVFSQFTSFLDLINYSLVKS---GVSCVQLNGSMSLTARDAAIKRFNDDPDCRIF 62
G + ++F+Q + LD+I L ++ V+ ++L+GS+ R +K FN DP +
Sbjct: 1829 GQHRVLIFAQHKALLDIIEKDLFQAHMKSVTYMRLDGSVVPEKRFEIVKAFNSDPTIDVL 1888
Query: 63 LLSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEE 122
LL+ G+ LNLT A + ME WNP + QA DR HR+GQ + + V + I T+EE
Sbjct: 1889 LLTTHVGGLGLNLTSADTLVFMEHDWNPMRDHQAMDRAHRLGQKRVVNVHRLIMRGTLEE 1948
Query: 123 RILKLQQQKEAVSEGLIDGSSEALGRLKLSEMINLFG 159
+++ LQ+ K +V+ +I+ + ++ + ++++LF
Sbjct: 1949 KVMSLQKFKVSVANTVINAENASMKTMNTDQLLDLFA 1985
>AT2G02090.1 | Symbols: CHR19, CHA19, ETL1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:523481-526884 FORWARD LENGTH=763
Length = 763
Score = 100 bits (248), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/121 (38%), Positives = 80/121 (66%)
Query: 11 IVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCRIFLLSLKAAG 70
++FSQ+TS LD++ ++L GV+ +L+GS +T R + FN+D LLS +A G
Sbjct: 608 LIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDRQTIVDTFNNDKSIFACLLSTRAGG 667
Query: 71 VALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQ 130
LNLT A V + + +NP +++QA+DR HRIGQ KP+ + + +T++T++E I ++ ++
Sbjct: 668 QGLNLTGADTVIIHDMDFNPQIDRQAEDRCHRIGQTKPVTIFRLVTKSTVDENIYEIAKR 727
Query: 131 K 131
K
Sbjct: 728 K 728
>AT5G18620.1 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1069
Length = 1069
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 85/147 (57%), Gaps = 6/147 (4%)
Query: 11 IVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCR-IFLLSLKAA 69
++FSQ T LD++ L+ G +++G+ RDA+I+ +N + +FLLS +A
Sbjct: 515 LIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAG 574
Query: 70 GVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQ 129
G+ +NL A V L + WNP V+ QAQDR HRIGQ K ++V +F TEN IE ++++
Sbjct: 575 GLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKVIERAY 634
Query: 130 QKEAVSEGLIDGSSEALGRLKLSEMIN 156
+K A+ +I GRL + +N
Sbjct: 635 KKLALDALVI-----QQGRLAEQKTVN 656
>AT5G18620.2 | Symbols: CHR17 | chromatin remodeling factor17 |
chr5:6196190-6202058 REVERSE LENGTH=1072
Length = 1072
Score = 97.8 bits (242), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 85/147 (57%), Gaps = 6/147 (4%)
Query: 11 IVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCR-IFLLSLKAA 69
++FSQ T LD++ L+ G +++G+ RDA+I+ +N + +FLLS +A
Sbjct: 515 LIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAG 574
Query: 70 GVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQ 129
G+ +NL A V L + WNP V+ QAQDR HRIGQ K ++V +F TEN IE ++++
Sbjct: 575 GLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTENAIEAKVIERAY 634
Query: 130 QKEAVSEGLIDGSSEALGRLKLSEMIN 156
+K A+ +I GRL + +N
Sbjct: 635 KKLALDALVI-----QQGRLAEQKTVN 656
>AT3G06400.3 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1057
Length = 1057
Score = 97.1 bits (240), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 86/147 (58%), Gaps = 6/147 (4%)
Query: 11 IVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCR-IFLLSLKAA 69
++FSQ T LD++ L+ G +++G+ RDA+I+ +N + +FLLS +A
Sbjct: 510 LIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAG 569
Query: 70 GVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQ 129
G+ +NL A V L + WNP V+ QAQDR HRIGQ K ++V +F TE+ IEE++++
Sbjct: 570 GLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIERAY 629
Query: 130 QKEAVSEGLIDGSSEALGRLKLSEMIN 156
+K A+ +I GRL + +N
Sbjct: 630 KKLALDALVIQQ-----GRLAEQKTVN 651
>AT3G06400.1 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1055
Length = 1055
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 86/147 (58%), Gaps = 6/147 (4%)
Query: 11 IVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCR-IFLLSLKAA 69
++FSQ T LD++ L+ G +++G+ RDA+I+ +N + +FLLS +A
Sbjct: 510 LIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAG 569
Query: 70 GVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQ 129
G+ +NL A V L + WNP V+ QAQDR HRIGQ K ++V +F TE+ IEE++++
Sbjct: 570 GLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIERAY 629
Query: 130 QKEAVSEGLIDGSSEALGRLKLSEMIN 156
+K A+ +I GRL + +N
Sbjct: 630 KKLALDALVIQQ-----GRLAEQKTVN 651
>AT3G06400.2 | Symbols: CHR11 | chromatin-remodeling protein 11 |
chr3:1941066-1946700 FORWARD LENGTH=1056
Length = 1056
Score = 97.1 bits (240), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 54/147 (36%), Positives = 86/147 (58%), Gaps = 6/147 (4%)
Query: 11 IVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCR-IFLLSLKAA 69
++FSQ T LD++ L+ G +++G+ RDA+I+ +N + +FLLS +A
Sbjct: 510 LIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYNKPGSEKFVFLLSTRAG 569
Query: 70 GVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQ 129
G+ +NL A V L + WNP V+ QAQDR HRIGQ K ++V +F TE+ IEE++++
Sbjct: 570 GLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTESAIEEKVIERAY 629
Query: 130 QKEAVSEGLIDGSSEALGRLKLSEMIN 156
+K A+ +I GRL + +N
Sbjct: 630 KKLALDALVIQQ-----GRLAEQKTVN 651
>AT5G19310.1 | Symbols: | Homeotic gene regulator |
chr5:6498906-6503432 FORWARD LENGTH=1064
Length = 1064
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 56/152 (36%), Positives = 88/152 (57%), Gaps = 8/152 (5%)
Query: 11 IVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCR--IFLLSLKA 68
++FSQ T +DL+ L + ++L+GS R +K+FN+ PD +FLLS +A
Sbjct: 715 LLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQRGILLKQFNE-PDSPYFMFLLSTRA 773
Query: 69 AGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQ 128
G+ LNL A + + + WNP ++QQA+DR HRIGQ K +RV ++ +IEE IL+
Sbjct: 774 GGLGLNLQTADTIIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSIGSIEEVILERA 833
Query: 129 QQK-----EAVSEGLIDGSSEALGRLKLSEMI 155
+QK + + GL + +S A R ++ E I
Sbjct: 834 KQKMGIDAKVIQAGLFNTTSTAQDRREMLEEI 865
>AT3G06010.1 | Symbols: ATCHR12 | Homeotic gene regulator |
chr3:1802435-1807284 REVERSE LENGTH=1102
Length = 1102
Score = 95.1 bits (235), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 90/159 (56%), Gaps = 8/159 (5%)
Query: 4 RDGSAKGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCR--I 61
R + ++FSQ T +D++ L + ++L+G+ R +K+FN+ PD +
Sbjct: 726 RKAGHRILLFSQMTRLIDVLEIYLTLNDYKYLRLDGTTKTDQRGLLLKQFNE-PDSPYFM 784
Query: 62 FLLSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIE 121
FLLS +A G+ LNL A V + + WNP ++QQA+DR HRIGQ K +RV ++ ++E
Sbjct: 785 FLLSTRAGGLGLNLQTADTVIIFDSDWNPQMDQQAEDRAHRIGQKKEVRVFVLVSVGSVE 844
Query: 122 ERILKLQQQK-----EAVSEGLIDGSSEALGRLKLSEMI 155
E IL+ +QK + + GL + +S A R ++ E I
Sbjct: 845 EVILERAKQKMGIDAKVIQAGLFNTTSTAQDRREMLEEI 883
>AT3G57300.2 | Symbols: INO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1540
Length = 1540
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 78/138 (56%)
Query: 4 RDGSAKGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCRIFL 63
R G+ + ++F+Q T L+++ + ++L+GS ++ R ++ F D +FL
Sbjct: 1252 RAGNHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDMVRDFQHRSDIFVFL 1311
Query: 64 LSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEER 123
LS +A G+ +NLT A V E WNP ++ QA DR HR+GQ K + V + I + T+EE+
Sbjct: 1312 LSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEK 1371
Query: 124 ILKLQQQKEAVSEGLIDG 141
IL QK V + ++ G
Sbjct: 1372 ILHRASQKNTVQQLVMTG 1389
>AT3G57300.1 | Symbols: INO80, ATINO80 | INO80 ortholog |
chr3:21199612-21207635 FORWARD LENGTH=1507
Length = 1507
Score = 94.0 bits (232), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 78/138 (56%)
Query: 4 RDGSAKGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCRIFL 63
R G+ + ++F+Q T L+++ + ++L+GS ++ R ++ F D +FL
Sbjct: 1219 RAGNHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDMVRDFQHRSDIFVFL 1278
Query: 64 LSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEER 123
LS +A G+ +NLT A V E WNP ++ QA DR HR+GQ K + V + I + T+EE+
Sbjct: 1279 LSTRAGGLGINLTAADTVIFYESDWNPTLDLQAMDRAHRLGQTKDVTVYRLICKETVEEK 1338
Query: 124 ILKLQQQKEAVSEGLIDG 141
IL QK V + ++ G
Sbjct: 1339 ILHRASQKNTVQQLVMTG 1356
>AT2G44980.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552440-18556669
REVERSE LENGTH=851
Length = 851
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 51/142 (35%), Positives = 81/142 (57%), Gaps = 1/142 (0%)
Query: 4 RDGSAKGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFN-DDPDCRIF 62
D + ++FSQ TS LD++ + S +L+GS+ R AAIK F+ D + +F
Sbjct: 381 HDSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFAAIKNFSVDGSNAFVF 440
Query: 63 LLSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEE 122
++S +A GV LNL A V E WNP V++QA R HRIGQ + + +TE+++EE
Sbjct: 441 MISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQISHVLSINLVTEHSVEE 500
Query: 123 RILKLQQQKEAVSEGLIDGSSE 144
IL+ ++K +S ++ + E
Sbjct: 501 VILRRAERKLQLSHNVVGDNME 522
>AT5G44800.1 | Symbols: CHR4, PKR1 | chromatin remodeling 4 |
chr5:18083659-18092162 REVERSE LENGTH=2223
Length = 2223
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/123 (38%), Positives = 79/123 (64%), Gaps = 2/123 (1%)
Query: 11 IVFSQFTSFLDLI-NYSLVKSGVSCVQ-LNGSMSLTARDAAIKRFNDDPDCRIFLLSLKA 68
++FSQ T LD++ +Y ++ G + ++GS+++ R AAI RFN D + +FLLS +A
Sbjct: 1024 LIFSQMTKLLDILEDYLNIEFGPKTFERVDGSVAVADRQAAIARFNQDKNRFVFLLSTRA 1083
Query: 69 AGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQ 128
G+ +NL A V + + +NP + QA +R HRIGQ+K + V + + ++EERIL+L
Sbjct: 1084 CGLGINLATADTVIIYDSDFNPHADIQAMNRAHRIGQSKRLLVYRLVVRASVEERILQLA 1143
Query: 129 QQK 131
++K
Sbjct: 1144 KKK 1146
>AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORWARD
LENGTH=862
Length = 862
Score = 89.0 bits (219), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 75/137 (54%)
Query: 9 KGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCRIFLLSLKA 68
K ++FS LD++ L++ G S +L+GS R + + FN P ++FL+S KA
Sbjct: 546 KILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQSLVDDFNASPSKQVFLISTKA 605
Query: 69 AGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQ 128
G+ LNL A+ V + +P WNP + QAQDR R GQ + + V + ++ ++EE + Q
Sbjct: 606 GGLGLNLVSANRVVIFDPNWNPSHDLQAQDRSFRYGQKRHVVVFRLLSAGSLEELVYTRQ 665
Query: 129 QQKEAVSEGLIDGSSEA 145
K+ +S + G E
Sbjct: 666 VYKQQLSNIAVAGKMET 682
>AT2G46020.2 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2193
Length = 2193
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 83/148 (56%), Gaps = 5/148 (3%)
Query: 2 IQRDGSAKGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFND-DPDCR 60
+QR G + ++FS T LD++ L + +++G+ SL R++AI FND D DC
Sbjct: 1320 LQRTGH-RVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCF 1378
Query: 61 IFLLSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTI 120
IFLLS++AAG LNL A V + +P NP E+QA R HRIGQ R VK I +
Sbjct: 1379 IFLLSIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQ---TREVKVIYMEAV 1435
Query: 121 EERILKLQQQKEAVSEGLIDGSSEALGR 148
E++ Q++ E S G +D + G+
Sbjct: 1436 VEKLSSHQKEDELRSGGSVDLEDDMAGK 1463
>AT2G46020.1 | Symbols: CHR2, ATBRM, BRM, CHA2 | transcription
regulatory protein SNF2, putative |
chr2:18923304-18931769 FORWARD LENGTH=2192
Length = 2192
Score = 87.4 bits (215), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/148 (38%), Positives = 83/148 (56%), Gaps = 5/148 (3%)
Query: 2 IQRDGSAKGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFND-DPDCR 60
+QR G + ++FS T LD++ L + +++G+ SL R++AI FND D DC
Sbjct: 1319 LQRTGH-RVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFNDPDTDCF 1377
Query: 61 IFLLSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTI 120
IFLLS++AAG LNL A V + +P NP E+QA R HRIGQ R VK I +
Sbjct: 1378 IFLLSIRAAGRGLNLQTADTVVIYDPDPNPKNEEQAVARAHRIGQ---TREVKVIYMEAV 1434
Query: 121 EERILKLQQQKEAVSEGLIDGSSEALGR 148
E++ Q++ E S G +D + G+
Sbjct: 1435 VEKLSSHQKEDELRSGGSVDLEDDMAGK 1462
>AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 |
chr5:25592160-25598405 REVERSE LENGTH=1090
Length = 1090
Score = 87.4 bits (215), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 42/118 (35%), Positives = 69/118 (58%)
Query: 11 IVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCRIFLLSLKAAG 70
++FSQ L+LI SL +G S ++++G+ R ++ F + IFLL+ + G
Sbjct: 752 LIFSQTRKMLNLIQDSLTSNGYSFLRIDGTTKAPDRLKTVEEFQEGHVAPIFLLTSQVGG 811
Query: 71 VALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQ 128
+ L LT A V +++P WNP + Q+ DR +RIGQ K + V + +T T+EE+I + Q
Sbjct: 812 LGLTLTKADRVIVVDPAWNPSTDNQSVDRAYRIGQTKDVIVYRLMTSATVEEKIYRKQ 869
>AT2G18760.1 | Symbols: CHR8 | chromatin remodeling 8 |
chr2:8129154-8133502 FORWARD LENGTH=1187
Length = 1187
Score = 86.7 bits (213), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 68/118 (57%)
Query: 11 IVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCRIFLLSLKAAG 70
++FSQ LD++ LV + S +++G + R A I FN+ D +F+L+ K G
Sbjct: 747 LLFSQTQQMLDILESFLVANEYSYRRMDGLTPVKQRMALIDEFNNSEDMFVFVLTTKVGG 806
Query: 71 VALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQ 128
+ NLT A+ V + +P WNP + QA++R RIGQ K + V + IT TIEE++ Q
Sbjct: 807 LGTNLTGANRVIIFDPDWNPSNDMQARERAWRIGQKKDVTVYRLITRGTIEEKVYHRQ 864
>AT1G48310.1 | Symbols: CHR18, CHA18 | chromatin remodeling factor18
| chr1:17848620-17853731 REVERSE LENGTH=673
Length = 673
Score = 86.3 bits (212), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 47/142 (33%), Positives = 77/142 (54%)
Query: 5 DGSAKGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCRIFLL 64
+ K +VF+ S L+ ++ L K V C++++GS ++R A + F D + + +L
Sbjct: 482 EAGCKFLVFAHHQSMLEELHQFLKKKKVGCIRIDGSTPASSRQALVSDFQDKDEIKAAVL 541
Query: 65 SLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERI 124
S++AAGV + LT AS V E W PG QA+DR HRIGQ + + + +T+++ I
Sbjct: 542 SIRAAGVGITLTAASTVIFAELSWTPGDLIQAEDRAHRIGQVSSVNIHYLLANDTVDDII 601
Query: 125 LKLQQQKEAVSEGLIDGSSEAL 146
+ Q K ++DG AL
Sbjct: 602 WDVVQSKLDNLGQMLDGQENAL 623
>AT3G19210.2 | Symbols: RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=908
Length = 908
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
Query: 2 IQRDGSAKGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDP-DCR 60
++R + ++ S +T LDL + ++L+GS +++ R + R ND D
Sbjct: 544 LRRKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGSTTISKRQKLVNRLNDPTKDEF 603
Query: 61 IFLLSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTI 120
FLLS KA G LNL A+ + L +P WNP ++QA R+ R GQ K + V +F++ TI
Sbjct: 604 AFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYVYRFLSTGTI 663
Query: 121 EERILKLQQQKEAVSEGL----IDGSSEALGRLKLSEMINLFGF 160
EE++ + Q KE + + + D S+ L ++ +LF F
Sbjct: 664 EEKVYQRQMSKEGLQKVIQHEQTDNSTRQGNLLSTEDLRDLFSF 707
>AT3G19210.1 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 |
chr3:6652799-6658876 REVERSE LENGTH=910
Length = 910
Score = 85.5 bits (210), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 86/164 (52%), Gaps = 5/164 (3%)
Query: 2 IQRDGSAKGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDP-DCR 60
++R + ++ S +T LDL + ++L+GS +++ R + R ND D
Sbjct: 546 LRRKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGSTTISKRQKLVNRLNDPTKDEF 605
Query: 61 IFLLSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTI 120
FLLS KA G LNL A+ + L +P WNP ++QA R+ R GQ K + V +F++ TI
Sbjct: 606 AFLLSSKAGGCGLNLIGANRLVLFDPDWNPANDKQAAARVWRDGQKKRVYVYRFLSTGTI 665
Query: 121 EERILKLQQQKEAVSEGL----IDGSSEALGRLKLSEMINLFGF 160
EE++ + Q KE + + + D S+ L ++ +LF F
Sbjct: 666 EEKVYQRQMSKEGLQKVIQHEQTDNSTRQGNLLSTEDLRDLFSF 709
>AT2G44980.2 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein | chr2:18552343-18556669
REVERSE LENGTH=877
Length = 877
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/152 (33%), Positives = 81/152 (53%), Gaps = 11/152 (7%)
Query: 4 RDGSAKGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFN--------- 54
D + ++FSQ TS LD++ + S +L+GS+ R AAIK F+
Sbjct: 390 HDSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFAAIKNFSAKTERGLDS 449
Query: 55 --DDPDCRIFLLSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVV 112
D + +F++S +A GV LNL A V E WNP V++QA R HRIGQ + +
Sbjct: 450 EVDGSNAFVFMISTRAGGVGLNLVAADTVIFYEQDWNPQVDKQALQRAHRIGQISHVLSI 509
Query: 113 KFITENTIEERILKLQQQKEAVSEGLIDGSSE 144
+TE+++EE IL+ ++K +S ++ + E
Sbjct: 510 NLVTEHSVEEVILRRAERKLQLSHNVVGDNME 541
>AT2G28290.1 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3574
Length = 3574
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 6/144 (4%)
Query: 11 IVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCR-IFLLSLKAA 69
+ FS T LD++ L G ++L+G S R A I FN IFLLS++A
Sbjct: 1093 LFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAG 1152
Query: 70 GVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQ 129
GV +NL A V L + WNP V+ QAQ R HRIGQ K + V++F T N++EE++ +
Sbjct: 1153 GVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEEQVRASAE 1212
Query: 130 QK-----EAVSEGLIDGSSEALGR 148
K ++++ G D ++ A R
Sbjct: 1213 HKLGVANQSITAGFFDNNTSAEDR 1236
>AT2G28290.2 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3529
Length = 3529
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 6/144 (4%)
Query: 11 IVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCR-IFLLSLKAA 69
+ FS T LD++ L G ++L+G S R A I FN IFLLS++A
Sbjct: 1093 LFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAG 1152
Query: 70 GVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQ 129
GV +NL A V L + WNP V+ QAQ R HRIGQ K + V++F T N++EE++ +
Sbjct: 1153 GVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEEQVRASAE 1212
Query: 130 QK-----EAVSEGLIDGSSEALGR 148
K ++++ G D ++ A R
Sbjct: 1213 HKLGVANQSITAGFFDNNTSAEDR 1236
>AT2G28290.3 | Symbols: SYD, CHR3 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr2:12056771-12072950 FORWARD LENGTH=3543
Length = 3543
Score = 85.1 bits (209), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 53/144 (36%), Positives = 78/144 (54%), Gaps = 6/144 (4%)
Query: 11 IVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCR-IFLLSLKAA 69
+ FS T LD++ L G ++L+G S R A I FN IFLLS++A
Sbjct: 1093 LFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFNKSGSPFFIFLLSIRAG 1152
Query: 70 GVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQ 129
GV +NL A V L + WNP V+ QAQ R HRIGQ K + V++F T N++EE++ +
Sbjct: 1153 GVGVNLQAADTVILFDTDWNPQVDLQAQARAHRIGQKKDVLVLRFETVNSVEEQVRASAE 1212
Query: 130 QK-----EAVSEGLIDGSSEALGR 148
K ++++ G D ++ A R
Sbjct: 1213 HKLGVANQSITAGFFDNNTSAEDR 1236
>AT3G16600.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
| chr3:5652839-5655670 REVERSE LENGTH=638
Length = 638
Score = 84.7 bits (208), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 49/73 (67%)
Query: 62 FLLSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIE 121
L+SLKA + LN+ ASHV L++ WWNP E QA DR HRIGQ + + V + +NT+E
Sbjct: 510 MLMSLKAGNLGLNMVAASHVILLDLWWNPTTEDQAIDRAHRIGQTRAVTVTRIAIKNTVE 569
Query: 122 ERILKLQQQKEAV 134
ERIL L ++K +
Sbjct: 570 ERILTLHERKRNI 582
>AT2G40770.1 | Symbols: | zinc ion binding;DNA binding;helicases;ATP
binding;nucleic acid binding | chr2:17013535-17021315
REVERSE LENGTH=1664
Length = 1664
Score = 82.0 bits (201), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 17/141 (12%)
Query: 5 DGSAKGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFN---------- 54
D K +VFS + LD++ ++ + ++C+++ G AI +F
Sbjct: 1447 DPQTKVLVFSSWNDVLDVLEHAFAANSITCIRMKGGRK---SQTAISKFKGSEKETQKTN 1503
Query: 55 ----DDPDCRIFLLSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIR 110
++ ++ LL ++ LNL A HV L+EP NP E QA R+HRIGQ KP
Sbjct: 1504 SHQKEEKSIQVLLLLVQHGANGLNLLEAQHVILVEPLLNPAAEAQAVGRVHRIGQEKPTL 1563
Query: 111 VVKFITENTIEERILKLQQQK 131
V +F+ T+EE I KL + K
Sbjct: 1564 VHRFLVSGTVEESIYKLNRNK 1584
>AT2G13370.1 | Symbols: CHR5 | chromatin remodeling 5 |
chr2:5544601-5555543 REVERSE LENGTH=1724
Length = 1724
Score = 81.3 bits (199), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 80/153 (52%), Gaps = 6/153 (3%)
Query: 4 RDGSAKGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFN---DDPDCR 60
R+ + ++FSQ LD++ L G +L+GS R A+ FN D C
Sbjct: 952 RETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHFNAPASDDFC- 1010
Query: 61 IFLLSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTI 120
FLLS +A G+ +NL A V + + WNP + QA R HRIGQ + + + +F+T ++
Sbjct: 1011 -FLLSTRAGGLGINLATADTVVIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSV 1069
Query: 121 EERILKLQQQKEAVSEGLIDGSSEALGRLKLSE 153
EE IL+ ++K V + L+ A GRL+ E
Sbjct: 1070 EEEILERAKRK-MVLDHLVIQKLNAEGRLEKRE 1101
>AT3G54460.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / F-box family protein |
chr3:20162050-20167186 REVERSE LENGTH=1378
Length = 1378
Score = 79.3 bits (194), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 71/133 (53%), Gaps = 2/133 (1%)
Query: 9 KGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCRIFLLSLKA 68
K ++FSQF + +I L +G+ ++ M + A+ F +D DC L+
Sbjct: 1195 KVLIFSQFLEHIHVIEQQLTTAGIKFGKMYSPMQSYNKMKALAMFQNDADCMALLMDGSG 1254
Query: 69 AGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQ 128
A + L+L+ +HVFLMEP W+ +E+Q R HR+G +PI V TIEE++++
Sbjct: 1255 A-LGLDLSFVTHVFLMEPIWDKSLEEQVISRAHRMGAKRPIFVETLTMRGTIEEQMMRFL 1313
Query: 129 QQKEAVSEGLIDG 141
+ E S+ L+ G
Sbjct: 1314 EDAEK-SDRLLSG 1325
>AT1G08600.2 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 15/170 (8%)
Query: 5 DGSAKGIVFSQFTSFLDLINYSLV------------KSGVSCVQLNGSMSLTARDAAIKR 52
D K +VFSQ LDLI L K G +++G + R + R
Sbjct: 1129 DVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYRIDGKTESSERQKLVDR 1188
Query: 53 FNDDPDCRI--FLLSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIR 110
FN+ + R+ L+S +A + +NL A+ V +++ WNP + QA R R GQ KP+
Sbjct: 1189 FNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYDLQAIFRAWRYGQKKPVF 1248
Query: 111 VVKFITENTIEERILKLQQQKEAVSEGLIDGSSEALGRLKLSEMINLFGF 160
+ + TIEE+I K Q KE ++ ++D + + EM++LF F
Sbjct: 1249 AYRLMARGTIEEKIYKRQVTKEGLAARVVD-RQQVHRTISKEEMLHLFEF 1297
>AT1G08600.4 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 15/170 (8%)
Query: 5 DGSAKGIVFSQFTSFLDLINYSLV------------KSGVSCVQLNGSMSLTARDAAIKR 52
D K +VFSQ LDLI L K G +++G + R + R
Sbjct: 1129 DVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYRIDGKTESSERQKLVDR 1188
Query: 53 FNDDPDCRI--FLLSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIR 110
FN+ + R+ L+S +A + +NL A+ V +++ WNP + QA R R GQ KP+
Sbjct: 1189 FNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYDLQAIFRAWRYGQKKPVF 1248
Query: 111 VVKFITENTIEERILKLQQQKEAVSEGLIDGSSEALGRLKLSEMINLFGF 160
+ + TIEE+I K Q KE ++ ++D + + EM++LF F
Sbjct: 1249 AYRLMARGTIEEKIYKRQVTKEGLAARVVD-RQQVHRTISKEEMLHLFEF 1297
>AT1G08600.3 | Symbols: ATRX | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1479
Length = 1479
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 15/170 (8%)
Query: 5 DGSAKGIVFSQFTSFLDLINYSLV------------KSGVSCVQLNGSMSLTARDAAIKR 52
D K +VFSQ LDLI L K G +++G + R + R
Sbjct: 1129 DVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYRIDGKTESSERQKLVDR 1188
Query: 53 FNDDPDCRI--FLLSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIR 110
FN+ + R+ L+S +A + +NL A+ V +++ WNP + QA R R GQ KP+
Sbjct: 1189 FNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYDLQAIFRAWRYGQKKPVF 1248
Query: 111 VVKFITENTIEERILKLQQQKEAVSEGLIDGSSEALGRLKLSEMINLFGF 160
+ + TIEE+I K Q KE ++ ++D + + EM++LF F
Sbjct: 1249 AYRLMARGTIEEKIYKRQVTKEGLAARVVD-RQQVHRTISKEEMLHLFEF 1297
>AT1G08600.1 | Symbols: ATRX, CHR20 | P-loop containing nucleoside
triphosphate hydrolases superfamily protein |
chr1:2724562-2733431 FORWARD LENGTH=1458
Length = 1458
Score = 77.4 bits (189), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 52/170 (30%), Positives = 82/170 (48%), Gaps = 15/170 (8%)
Query: 5 DGSAKGIVFSQFTSFLDLINYSLV------------KSGVSCVQLNGSMSLTARDAAIKR 52
D K +VFSQ LDLI L K G +++G + R + R
Sbjct: 1108 DVGDKALVFSQSIPTLDLIELYLSRVPRHGKQGKFWKKGKDWYRIDGKTESSERQKLVDR 1167
Query: 53 FNDDPDCRI--FLLSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIR 110
FN+ + R+ L+S +A + +NL A+ V +++ WNP + QA R R GQ KP+
Sbjct: 1168 FNEPDNKRVKCTLISTRAGSLGINLYAANRVIIVDGSWNPTYDLQAIFRAWRYGQKKPVF 1227
Query: 111 VVKFITENTIEERILKLQQQKEAVSEGLIDGSSEALGRLKLSEMINLFGF 160
+ + TIEE+I K Q KE ++ ++D + + EM++LF F
Sbjct: 1228 AYRLMARGTIEEKIYKRQVTKEGLAARVVD-RQQVHRTISKEEMLHLFEF 1276
>AT2G25170.1 | Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin
remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763
FORWARD LENGTH=1384
Length = 1384
Score = 77.0 bits (188), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 69/132 (52%), Gaps = 2/132 (1%)
Query: 11 IVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCRI-FLLSLKAA 69
++++QF LDL+ +++G + R I RFN + FLLS +A
Sbjct: 615 LIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAERQIRIDRFNAKNSNKFCFLLSTRAG 674
Query: 70 GVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQ 129
G+ +NL A V + + WNP + QA R HR+GQ + + + I TIEER+++L +
Sbjct: 675 GLGINLATADTVIIYDSDWNPHADLQAMARAHRLGQTNKVMIYRLINRGTIEERMMQLTK 734
Query: 130 QKEAVSEGLIDG 141
+K V E L+ G
Sbjct: 735 KK-MVLEHLVVG 745
>AT4G31900.2 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1161
Length = 1161
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Query: 11 IVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCRI-FLLSLKAA 69
++++QF L L+ + +++G +S R I RFN + R FLLS +A
Sbjct: 503 LIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQVRIDRFNAENSNRFCFLLSTRAG 562
Query: 70 GVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQ 129
G+ +NL A V + + WNP + QA R+HR+GQ + + + I + T+EER++++ +
Sbjct: 563 GIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQTNKVMIYRLIHKGTVEERMMEITK 622
Query: 130 QK 131
K
Sbjct: 623 NK 624
>AT4G31900.1 | Symbols: PKR2 | chromatin remodeling factor, putative
| chr4:15431528-15438443 FORWARD LENGTH=1202
Length = 1202
Score = 77.0 bits (188), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 67/122 (54%), Gaps = 1/122 (0%)
Query: 11 IVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCRI-FLLSLKAA 69
++++QF L L+ + +++G +S R I RFN + R FLLS +A
Sbjct: 544 LIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQVRIDRFNAENSNRFCFLLSTRAG 603
Query: 70 GVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQ 129
G+ +NL A V + + WNP + QA R+HR+GQ + + + I + T+EER++++ +
Sbjct: 604 GIGINLATADTVIIYDSDWNPHADLQAMARVHRLGQTNKVMIYRLIHKGTVEERMMEITK 663
Query: 130 QK 131
K
Sbjct: 664 NK 665
>AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 |
chr1:1618795-1623195 REVERSE LENGTH=1410
Length = 1410
Score = 72.0 bits (175), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 76/154 (49%), Gaps = 7/154 (4%)
Query: 9 KGIVFSQFTSFLDLINYSLV-----KSGVSCVQLNGSMSLTARDAAIKRFNDDPD-CRIF 62
K +VFSQ+ L LI LV G + ++G + R I FND ++F
Sbjct: 1217 KVLVFSQYIDPLKLIMKHLVSRFKWNPGEEVLYMHGKLEQKQRQTLINEFNDPKSKAKVF 1276
Query: 63 LLSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEE 122
L S KA ++L AS V L++ WNP VE+QA R +RIGQ + + + + T E
Sbjct: 1277 LASTKACSEGISLVGASRVILLDVVWNPAVERQAISRAYRIGQKRIVYTYHLVAKGTPEG 1336
Query: 123 RILKLQQQKEAVSEGLIDGSS-EALGRLKLSEMI 155
Q QK+ +SE + SS G+ K++E +
Sbjct: 1337 PKYCKQAQKDRISELVFACSSRHDKGKEKIAEAV 1370
>AT5G07810.1 | Symbols: | SNF2 domain-containing protein / helicase
domain-containing protein / HNH endonuclease
domain-containing protein | chr5:2491412-2498484 REVERSE
LENGTH=1190
Length = 1190
Score = 64.7 bits (156), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 72/142 (50%), Gaps = 4/142 (2%)
Query: 7 SAKGIVFSQFTSFLDLINYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDPDCRIFLLSL 66
S K +VF+ LD I + G+ V+++G+ R A++ F + +I ++ +
Sbjct: 554 STKMVVFAHHHKVLDGIQEFICDKGIGFVRIDGTTLPRDRQLAVQSFQFSSEVKIAIIGV 613
Query: 67 KAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEE---- 122
+A GV L+ + A +V +E P + QA+DR HR GQ + V F ++T++E
Sbjct: 614 EAGGVGLDFSAAQNVVFLELPKTPSLLLQAEDRAHRRGQTSAVNVYIFCAKDTMDESNWQ 673
Query: 123 RILKLQQQKEAVSEGLIDGSSE 144
+ K + + ++G DG +E
Sbjct: 674 NLNKKLHRISSTTDGKYDGKTE 695
>AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containing
protein / helicase domain-containing protein |
chr2:7097638-7101182 FORWARD LENGTH=888
Length = 888
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 5/133 (3%)
Query: 9 KGIVFSQFTSFLDLINY--SLVKS---GVSCVQLNGSMSLTARDAAIKRFNDDPDCRIFL 63
K +VFSQ+ L + +L K G L G+ S R+ +++ FN PD +IF
Sbjct: 712 KLLVFSQYLIPLKFLERLAALAKGWKLGKEVFVLTGNTSSEQREWSMETFNSSPDAKIFF 771
Query: 64 LSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEER 123
S+KA G ++L AS + +++ NP V +QA R R GQ K + + I ++ EE
Sbjct: 772 GSIKACGEGISLVGASRILILDVPLNPSVTRQAIGRAFRPGQKKMVHAYRLIAGSSPEEE 831
Query: 124 ILKLQQQKEAVSE 136
+KE +S+
Sbjct: 832 DHNTCFKKEVISK 844
>AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 |
chr3:8832085-8835722 REVERSE LENGTH=1132
Length = 1132
Score = 60.8 bits (146), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/142 (29%), Positives = 68/142 (47%), Gaps = 6/142 (4%)
Query: 9 KGIVFSQFTSFLDLINYSLV-----KSGVSCVQLNGSMSLTARDAAIKRFND-DPDCRIF 62
K +V+SQ+ L LI L+ G + ++G + R I FN D ++
Sbjct: 945 KVLVYSQYIDTLKLIMEQLIAECDWTEGEQILLMHGKVEQRDRQHMIDNFNKPDSGSKVL 1004
Query: 63 LLSLKAAGVALNLTVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEE 122
L S KA ++L AS V +++ WNP VE QA R RIGQ + + + + ++T E
Sbjct: 1005 LASTKACSEGISLVGASRVVILDVVWNPSVESQAISRAFRIGQKRAVFIYHLMVKDTSEW 1064
Query: 123 RILKLQQQKEAVSEGLIDGSSE 144
Q +K +SE + ++E
Sbjct: 1065 NKYCKQSEKHRISELVFSSTNE 1086
>AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 |
chr2:9179622-9182356 REVERSE LENGTH=816
Length = 816
Score = 60.1 bits (144), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 57/106 (53%)
Query: 31 GVSCVQLNGSMSLTARDAAIKRFNDDPDCRIFLLSLKAAGVALNLTVASHVFLMEPWWNP 90
G + G S R+ +++RFN+ + ++F S+KA G ++L AS V +++ NP
Sbjct: 665 GKEMFTITGDSSNEQREWSMERFNNSLEAKVFFGSIKACGEGISLVGASRVLILDVHLNP 724
Query: 91 GVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVSE 136
V QQA R +R GQ + + K + ++ EE + +KE +S+
Sbjct: 725 SVTQQAVARAYRPGQKRKVYAYKLVAADSPEEENYETCTRKEMMSK 770
>AT3G42670.1 | Symbols: CHR38, CLSY | chromatin remodeling 38 |
chr3:14755906-14760085 REVERSE LENGTH=1256
Length = 1256
Score = 58.5 bits (140), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 60/120 (50%), Gaps = 4/120 (3%)
Query: 19 FLDLI-NYSLVKSGVSCVQLNGSMSLTARDAAIKRFNDDP--DCRIFLLSLKAAGVALNL 75
FL+L N K G + L G + L R I +F ++P R+ L S+ A ++L
Sbjct: 1088 FLELFENVFRWKRGRELLTLTGDLELFERGRVIDKF-EEPGGQSRVLLASITACAEGISL 1146
Query: 76 TVASHVFLMEPWWNPGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVS 135
T AS V +++ WNP +QA R R GQ K + V + ++ T+EE + KE VS
Sbjct: 1147 TAASRVIMLDSEWNPSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVS 1206
>AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 |
chr5:6899015-6903266 REVERSE LENGTH=1261
Length = 1261
Score = 57.0 bits (136), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 53/106 (50%), Gaps = 1/106 (0%)
Query: 31 GVSCVQLNGSMSLTARDAAIKRFNDDPD-CRIFLLSLKAAGVALNLTVASHVFLMEPWWN 89
G + L G + L R I +F + + R+ L S+ A ++LT AS V +++ WN
Sbjct: 1107 GREILTLTGDLELFERGRVIDKFEEPGNPSRVLLASITACAEGISLTAASRVIMLDSEWN 1166
Query: 90 PGVEQQAQDRIHRIGQNKPIRVVKFITENTIEERILKLQQQKEAVS 135
P +QA R R GQ K + V + ++ T+EE + KE VS
Sbjct: 1167 PSKTKQAIARAFRPGQQKVVYVYQLLSRGTLEEDKYRRTTWKEWVS 1212