Miyakogusa Predicted Gene
- Lj0g3v0228259.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0228259.1 tr|Q8GW36|Q8GW36_ARATH At3g13950 OS=Arabidopsis
thaliana GN=At3g13950/MDC16_7 PE=2 SV=1,47.62,3e-19,seg,NULL; PGG,PGG
domain,CUFF.14897.1
(204 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G13950.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 124 4e-29
AT4G13266.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 111 4e-25
AT5G54700.1 | Symbols: | Ankyrin repeat family protein | chr5:2... 61 6e-10
AT5G51160.1 | Symbols: | Ankyrin repeat family protein | chr5:2... 55 4e-08
AT5G50140.1 | Symbols: | Ankyrin repeat family protein | chr5:2... 49 2e-06
>AT3G13950.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G13266.1); Has 339 Blast hits to 265 proteins
in 12 species: Archae - 0; Bacteria - 0; Metazoa - 0;
Fungi - 0; Plants - 339; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr3:4604149-4605195 FORWARD
LENGTH=207
Length = 207
Score = 124 bits (311), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/166 (41%), Positives = 106/166 (63%), Gaps = 13/166 (7%)
Query: 17 YQRTES----RYQNFKGNWMEEMRGSLMVVATVIATLTFQIAINPPGGVWQTDT---NSQ 69
Y+ + S +Y +G+W+E+ RG+LMV ATVIA ++FQ+ +NPPGGVWQ+D +Q
Sbjct: 11 YEESSSEWFVKYLKRQGDWLEKTRGNLMVTATVIAGMSFQVMVNPPGGVWQSDNCSFGNQ 70
Query: 70 QGCAPDKICKAGTSVLAFGDSDQKLKYEIFILLCTISFSASQTIILLMISGFPLRNRVVM 129
G AP +AGT+VL + +S +++ Y I+ T+SFS S ++ILL+ISG LRNR++M
Sbjct: 71 TGTAPFCKGRAGTAVLEY-ESSKRIAYIGMIISSTVSFSTSMSLILLVISGIRLRNRMIM 129
Query: 130 WVLILIMCTSVFCTAGAYLIAIWMVLNPASRTVVRITRYYILFWVG 175
+L M +V C + A+ AI +V + +I RY +L +VG
Sbjct: 130 AILGTFMVVAVLCISAAFFFAIVLVQSDD-----QIIRYILLIYVG 170
>AT4G13266.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT3G13950.1); Has 35333 Blast hits to 34131
proteins in 2444 species: Archae - 798; Bacteria -
22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses
- 0; Other Eukaryotes - 9610 (source: NCBI BLink). |
chr4:7706009-7706810 REVERSE LENGTH=221
Length = 221
Score = 111 bits (277), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 62/174 (35%), Positives = 104/174 (59%), Gaps = 9/174 (5%)
Query: 8 TRAESQNGAYQRTES---RYQNFKGNWMEEMRGSLMVVATVIATLTFQIAINPPGGVWQT 64
TR + +Q + + RY + +G+W+E+ RG+L+V ATVIA ++F + +NPPGGVWQ+
Sbjct: 5 TRLTREEHPFQDSSAWFLRYLDHQGDWLEKTRGNLVVAATVIAAMSFGVMVNPPGGVWQS 64
Query: 65 DTNSQQGCAP--DKIC--KAGTSVLAFGDSDQKLKYEIFILLCTISFSASQTIILLMISG 120
+ S +G + C K GTS+L S +++ Y ++ +SFSAS II L+I G
Sbjct: 65 EDCSSKGQTTFQTRTCEGKLGTSILEHNPS-KRIFYLGMVISNLVSFSASMGIIFLVIIG 123
Query: 121 FPLRNRVVMWVLILIMCTSVFCTAGAYLIAIWMVLNPASRTVVRITRYYILFWV 174
F RNR++M ++++ M +V C + A+ A +V + + +I + Y+ FWV
Sbjct: 124 FRFRNRLIMTIMVMFMVVAVLCISAAFFFAAGLVQHEDD-FIEKILQIYLGFWV 176
>AT5G54700.1 | Symbols: | Ankyrin repeat family protein |
chr5:22223096-22225509 REVERSE LENGTH=480
Length = 480
Score = 60.8 bits (146), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 81/157 (51%), Gaps = 22/157 (14%)
Query: 2 EGRSLPTRAESQNGAYQRTESRYQNFKGNWMEEMRGSLMVVATVIATLTFQIAINPPGGV 61
+ + P+ A G + ES + ++ R ++ VVA +IA++TF + +NPPGG+
Sbjct: 183 DDANFPSIALKFGGESHKEESVMHS---EALQNARNTITVVAILIASVTFAVGMNPPGGI 239
Query: 62 WQTDTNSQQGCAPDKICKAGTSVLAFGDSDQKLKYEIFILLCTISFSASQTIILLMISGF 121
+Q T+S+ G SV A + + ++IF + +I+ S I++L++S
Sbjct: 240 YQESTSSK-----------GKSVAA-----KTVAFKIFYVSNSIALFTSLWIVILLVSII 283
Query: 122 PLRNRVVMWVLIL---IMCTSVFCTAGAYLIAIWMVL 155
P + + + VL++ +M SV A +Y+ W++L
Sbjct: 284 PFKPKSLKNVLVITHKMMSVSVAALATSYVAVGWIIL 320
>AT5G51160.1 | Symbols: | Ankyrin repeat family protein |
chr5:20792280-20793681 FORWARD LENGTH=442
Length = 442
Score = 54.7 bits (130), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 57/108 (52%), Gaps = 6/108 (5%)
Query: 23 RYQNFKG--NWMEEMRGSLMVVATVIATLTFQIAINPPGGVWQTDT----NSQQGCAPDK 76
+Y FK + E R +L+VVA+++AT TFQ ++ PPGG WQ + +
Sbjct: 256 KYFTFKKHRDSPSEARSALLVVASLVATATFQASLTPPGGTWQDSSIPAVSQNTTNVNTT 315
Query: 77 ICKAGTSVLAFGDSDQKLKYEIFILLCTISFSASQTIILLMISGFPLR 124
+A T+ + + + + +F+ TI FS S +++ ++ GFPLR
Sbjct: 316 NQQAHTAGQSIMGTFNGVAFTLFVFFNTIGFSVSLSMLNILTLGFPLR 363
>AT5G50140.1 | Symbols: | Ankyrin repeat family protein |
chr5:20395856-20398197 FORWARD LENGTH=535
Length = 535
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 68/141 (48%), Gaps = 21/141 (14%)
Query: 23 RYQNFKGNWMEEMRGSLMVVATVIATLTFQIAINPPGGVWQTDTNSQQGCAPDKICKAGT 82
+ + + ++ R ++ VVA +IA++TF +NPPGGV+ Q G K GT
Sbjct: 351 KEKEMQSEALQNARNTITVVAVLIASVTFTCGLNPPGGVY------QDGHFIGKATAGGT 404
Query: 83 SVLAFGDSDQKLKYEIFILLCTISFSASQTIILLMISGFPLRNRVVMWVLIL---IMCTS 139
+ +++F + +I+ S I++L++S P R + + LI+ ++ +
Sbjct: 405 -----------VAFKVFSVSNSIALFTSLCIVILLLSIIPFRTKSLKTFLIITHKMIWLA 453
Query: 140 VFCTAGAYLIAIWMVLNPASR 160
V A AY+ + L P SR
Sbjct: 454 VIAMASAYVAGTCVTL-PHSR 473