Miyakogusa Predicted Gene
- Lj0g3v0227509.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0227509.1 tr|F2DQ54|F2DQ54_HORVD Predicted protein
OS=Hordeum vulgare var. distichum PE=2 SV=1,34.27,7e-19,SUBFAMILY NOT
NAMED,NULL; FAMILY NOT NAMED,NULL; seg,NULL; PORR,Plant organelle RNA
recognition doma,CUFF.14828.1
(244 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G08940.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase ... 285 2e-77
AT4G01037.1 | Symbols: WTF1, AtWTF1 | Ubiquitin carboxyl-termina... 104 4e-23
AT5G21970.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase ... 102 2e-22
AT1G79120.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase ... 75 3e-14
AT5G48040.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase ... 74 1e-13
AT4G33495.1 | Symbols: RPD1 | Ubiquitin carboxyl-terminal hydrol... 74 1e-13
AT3G63090.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase ... 67 2e-11
AT2G31290.2 | Symbols: | Ubiquitin carboxyl-terminal hydrolase ... 66 2e-11
AT2G31290.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase ... 66 2e-11
AT3G58520.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase ... 65 4e-11
AT5G62990.1 | Symbols: emb1692 | Ubiquitin carboxyl-terminal hyd... 65 5e-11
AT3G58520.2 | Symbols: | Ubiquitin carboxyl-terminal hydrolase ... 58 6e-09
AT5G45790.2 | Symbols: | Ubiquitin carboxyl-terminal hydrolase ... 52 2e-07
AT5G45790.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase ... 52 3e-07
>AT4G08940.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr4:5730986-5732173 REVERSE LENGTH=395
Length = 395
Score = 285 bits (729), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 153/250 (61%), Positives = 184/250 (73%), Gaps = 8/250 (3%)
Query: 1 MAW-RFFSIFKSSKTL-----SPKNPNPNFFTAPFSTSFLVXXXXXXXXXXXXXXXSPRT 54
MAW RFFS ++ K+L S NPNPNF T+PFSTSFL+ S RT
Sbjct: 1 MAWLRFFS--RTLKSLPQISSSSPNPNPNFRTSPFSTSFLITKTPDKLKKKRKKPESART 58
Query: 55 NPVQPQPNRIAELERILDRDALLRFVTKSKQFLSSQPEHVLRLDDAGKLHRELGFPRGRK 114
+Q + ++ LE ++ RDA RF+ +SK+F+S QPE +LRLDDAGKL+RELGFPRGRK
Sbjct: 59 KSIQHESTKLPHLESLVSRDAHFRFLIRSKEFISKQPERILRLDDAGKLYRELGFPRGRK 118
Query: 115 VSRFIQDHPLLFQTYRHSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMSA 174
V++FI HPL+FQTYRHSDGK+WLGFT+ MEDLL EE+ +M+SME DRV+ VR+LLMM+
Sbjct: 119 VTKFIPKHPLIFQTYRHSDGKIWLGFTEFMEDLLDEEKGLMESMELDRVNCVRKLLMMTK 178
Query: 175 RNRIALSKIHHCRTLFGIPHDFRDRVAKYPGFFRVVVESDGRRVLELVNWDPVLAVSALE 234
RI LSKIHH R LFGIP DFRDRVAKYP +FRVV DG RVLELVNWD LAVS LE
Sbjct: 179 DKRILLSKIHHTRLLFGIPEDFRDRVAKYPDYFRVVTGGDGNRVLELVNWDTNLAVSELE 238
Query: 235 REFVVDEDGA 244
R F++DED A
Sbjct: 239 RLFMIDEDKA 248
>AT4G01037.1 | Symbols: WTF1, AtWTF1 | Ubiquitin carboxyl-terminal
hydrolase family protein | chr4:451444-453030 REVERSE
LENGTH=528
Length = 528
Score = 104 bits (260), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 66/184 (35%), Positives = 98/184 (53%), Gaps = 4/184 (2%)
Query: 54 TNPVQPQPNRIAEL--ERILDRDALLRFVTKSKQFLSSQPEHVLRLDDAGKLHRELGFPR 111
PV+ R EL + ++ RD L+ V ++ L SQP+ ++ L GK R+LG +
Sbjct: 69 VEPVRAAVKRRKELTFDSVVQRDKKLKLVLNIRKILVSQPDRMMSLRGLGKYRRDLGLKK 128
Query: 112 GRKVSRFIQDHPLLFQTYRHSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRRLLM 171
R+ ++ +P +F+ + T E L +E I + +E V K+R+L+M
Sbjct: 129 RRRFIALLRKYPGVFEIVEEGAYSLRFKMTSEAERLYLDEMRIRNELEDVLVVKLRKLVM 188
Query: 172 MSARNRIALSKIHHCRTLFGIPHDFRDRVA-KYPGFFRVVVESDGRRVLELVNWDPVLAV 230
MS RI L KI H +T G+P +FRD + +YP +FRVV G LEL +WDP LAV
Sbjct: 189 MSIDKRILLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTPRGP-ALELTHWDPELAV 247
Query: 231 SALE 234
SA E
Sbjct: 248 SAAE 251
>AT5G21970.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr5:7262071-7263420 FORWARD LENGTH=449
Length = 449
Score = 102 bits (255), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 58/176 (32%), Positives = 94/176 (53%), Gaps = 1/176 (0%)
Query: 62 NRIAELERILDRDALLRFVTKSKQFLSSQPEHVLRLDDAGKLHRELGFPRGRKVSRFIQD 121
R+ ELE ++ + V + L + + ++ + + R++ P+ K+S FI+
Sbjct: 56 KRVQELEIATEKWKIASKVIFLMEVLKGERDMIMTVRSFEQYRRQINLPKPHKISDFIRK 115
Query: 122 HPLLFQTYRHSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMSARNRIALS 181
P LF+ Y+ G +W G T+ EDLL E +++ + V R LMMS ++ L
Sbjct: 116 SPKLFELYKDQRGVLWCGLTEGGEDLLDEHDKLLEENGDKAAEHVTRCLMMSVDKKLPLD 175
Query: 182 KIHHCRTLFGIPHDFR-DRVAKYPGFFRVVVESDGRRVLELVNWDPVLAVSALERE 236
KI H R FG+P DFR + V +P F+VV DG LELV+W+P A++ LE++
Sbjct: 176 KIVHFRRDFGLPLDFRINWVYNFPQHFKVVKLGDGEEYLELVSWNPAWAITELEKK 231
>AT1G79120.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr1:29767314-29768555 REVERSE
LENGTH=413
Length = 413
Score = 75.5 bits (184), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 52/180 (28%), Positives = 90/180 (50%), Gaps = 5/180 (2%)
Query: 56 PVQPQPNRIAELERILDRDALLRFVTKSKQFLSSQPEHVLRLDDAGKLHRELGFPRGRKV 115
P Q +R+ +L++ +D + + + K + +Q L L D L + +GF +
Sbjct: 57 PKQKVYHRVHDLDKAIDLNKKPSLILQLKSIIQAQKHGSLLLRD---LEKHVGFVHKWNL 113
Query: 116 SRFIQDHPLLFQTYRHSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMSAR 175
I+ +P +F ++ T+ + + AEE +SME V+ +R+LLMMS
Sbjct: 114 MAAIEKYPTIFYVGGGHKEPPFVMLTEKAKKIAAEESEATESMEPILVNNLRKLLMMSVD 173
Query: 176 NRIALSKIHHCRTLFGIPHDFRDR-VAKYPGFFRVVVESDGRRVLELVNWDPVLAVSALE 234
R+ L K+ ++ G+P DF+ + KY FF + V +G+ L L NWD LA++A E
Sbjct: 174 CRVPLEKVEFIQSAMGLPQDFKSTLIPKYTEFFSLKV-INGKVNLVLENWDSSLAITARE 232
>AT5G48040.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr5:19470461-19471729 FORWARD
LENGTH=422
Length = 422
Score = 73.9 bits (180), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 59/176 (33%), Positives = 93/176 (52%), Gaps = 9/176 (5%)
Query: 66 ELERILDRDALLRFVTKSKQFLSSQPEHVLRLDDAGKL-HR-ELGFPRGRKVSRFIQDHP 123
EL+ ++ R+ LR V +S+ P+ LRL L HR +LG P+ K+S FI+ +P
Sbjct: 44 ELDAVVVREKHLRAVCNLVSVISASPD--LRLPIFKLLPHRGQLGLPQELKLSAFIRRYP 101
Query: 124 LLF--QTYRHSDGKM--WLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMSARNRIA 179
+F Y S G G T DL EE + E+D + ++ +LLM++ ++
Sbjct: 102 NIFVEHCYWDSAGTSVPCFGLTRETIDLYYEEVDVSRVNERDVLVRLCKLLMLTCERTLS 161
Query: 180 LSKIHHCRTLFGIPHDFRDR-VAKYPGFFRVVVESDGRRVLELVNWDPVLAVSALE 234
L I H R G+P+D+RD + K+P F +V S L+L++WD LAVS ++
Sbjct: 162 LHSIDHLRWDLGLPYDYRDSLITKHPDLFSLVKLSSDLDGLKLIHWDEHLAVSQMQ 217
>AT4G33495.1 | Symbols: RPD1 | Ubiquitin carboxyl-terminal hydrolase
family protein | chr4:16111349-16112578 REVERSE
LENGTH=409
Length = 409
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/164 (31%), Positives = 86/164 (52%), Gaps = 6/164 (3%)
Query: 77 LRFVTKSKQFLSSQPEHVLRLDDAGKLHRELGFP-RGRKVSRFIQDHPLLFQTYRHSDGK 135
+R V K + SQP H + + L R LG + + F+ P +F+ Y H +
Sbjct: 62 IRKVVKFHSLILSQPNHTIAISLLDTLARRLGLGFKQHEPGAFLLKFPHVFEIYEHPVQR 121
Query: 136 -MWLGFT-DLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMSARNRIALSKIHHCRTLFGIP 193
++ T ++ + E + ++D + D V ++R+L+MMS RI L + RT FG+P
Sbjct: 122 ILYCRLTRKALDQIRHEHEAVLDQI-PDAVTRLRKLVMMSNTGRIRLEHVRIARTEFGLP 180
Query: 194 HDFRDRVA-KYPGFFRVVVESDGR-RVLELVNWDPVLAVSALER 235
DF V K+P FFR++ + R + +E+V DP L++ A+ER
Sbjct: 181 EDFEYSVILKHPQFFRLIDGEETRDKYIEIVEKDPNLSICAIER 224
>AT3G63090.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr3:23313617-23314831 FORWARD
LENGTH=404
Length = 404
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 68/128 (53%), Gaps = 7/128 (5%)
Query: 114 KVSRFIQDHPLLFQTYR-----HSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRR 168
K F++ +P LF+ Y SD +L T + L EEQ I E V K+ +
Sbjct: 89 KAKSFVEMNPSLFEIYYDRIKPKSDPVQFLRPTPRLRAFLDEEQRIYSENEPLLVSKLCQ 148
Query: 169 LLMMSARNRIALSKIHHCRTLFGIPHDFRDR-VAKYPGFFRVV-VESDGRRVLELVNWDP 226
LLMM+ I+ K+ H + FG P+DF + V KYP +FR+ + +G+ LELV+W+P
Sbjct: 149 LLMMAKDKVISADKLVHVKRDFGFPNDFLMKLVQKYPNYFRLTGLPEEGKSFLELVSWNP 208
Query: 227 VLAVSALE 234
A S +E
Sbjct: 209 DFAKSKIE 216
>AT2G31290.2 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr2:13344151-13345398 FORWARD
LENGTH=415
Length = 415
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 69/125 (55%), Gaps = 6/125 (4%)
Query: 114 KVSRFIQDHPLLFQTYRHSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMS 173
K +++ +P F Y +D + + T M L+ EE+ + D+ E D++ +LLM+S
Sbjct: 79 KALNWLKKYPCCFHVYLEND-EYYCRLTKPMMTLVEEEELVKDTQEPVLADRLAKLLMLS 137
Query: 174 ARNRIALSKIHHCRTLFGIPHDFRDRVA-KYPGFFRVVVESDGRRV---LELVNWDPVLA 229
R+ + K++ + FG P D+ R+ KY FR+V S GR+ +EL+ W P LA
Sbjct: 138 VNQRLNVVKLNEFKRSFGFPDDYVIRIVPKYSDVFRLVNYS-GRKSSMEIELLLWKPELA 196
Query: 230 VSALE 234
VSA+E
Sbjct: 197 VSAVE 201
>AT2G31290.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr2:13344151-13345398 FORWARD
LENGTH=415
Length = 415
Score = 65.9 bits (159), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/125 (33%), Positives = 69/125 (55%), Gaps = 6/125 (4%)
Query: 114 KVSRFIQDHPLLFQTYRHSDGKMWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMS 173
K +++ +P F Y +D + + T M L+ EE+ + D+ E D++ +LLM+S
Sbjct: 79 KALNWLKKYPCCFHVYLEND-EYYCRLTKPMMTLVEEEELVKDTQEPVLADRLAKLLMLS 137
Query: 174 ARNRIALSKIHHCRTLFGIPHDFRDRVA-KYPGFFRVVVESDGRRV---LELVNWDPVLA 229
R+ + K++ + FG P D+ R+ KY FR+V S GR+ +EL+ W P LA
Sbjct: 138 VNQRLNVVKLNEFKRSFGFPDDYVIRIVPKYSDVFRLVNYS-GRKSSMEIELLLWKPELA 196
Query: 230 VSALE 234
VSA+E
Sbjct: 197 VSAVE 201
>AT3G58520.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr3:21643921-21645277 REVERSE
LENGTH=418
Length = 418
Score = 65.1 bits (157), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/172 (28%), Positives = 80/172 (46%), Gaps = 5/172 (2%)
Query: 67 LERILDRDALLRFVTKSKQFLSSQPEHVLRLDDAGKLHRELGFPRGRKVSRFIQDHPLLF 126
L+ ++D + L+ K + P L + LG V RF++ +P LF
Sbjct: 41 LDHVIDTETDLKAACILKDAIKRSPTGFLTAKSVADWQKLLGLTV--PVLRFLRRYPTLF 98
Query: 127 QTYRHSDGKMWLGF--TDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMSARNRIALSKIH 184
+ H+ F TD L ++E+ I S E D V+++ R+LMM ++L +H
Sbjct: 99 HEFPHARYASLPCFKLTDTALMLDSQEEIIHQSHEADTVERLCRVLMMMRSKTVSLRSLH 158
Query: 185 HCRTLFGIPHDF-RDRVAKYPGFFRVVVESDGRRVLELVNWDPVLAVSALER 235
+ G+P ++ + V KYP F V S+G L+LV W A SAL++
Sbjct: 159 SLKFDLGLPDNYEKTLVMKYPDHFCFVKASNGNPCLKLVKWRDEFAFSALQK 210
>AT5G62990.1 | Symbols: emb1692 | Ubiquitin carboxyl-terminal
hydrolase family protein | chr5:25277828-25279312
FORWARD LENGTH=494
Length = 494
Score = 64.7 bits (156), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 87/179 (48%), Gaps = 13/179 (7%)
Query: 63 RIAELERILDRDALLRFVTKSKQFLSSQPEHVLRLDDAGKLHRELGFPRGRKVSRFIQDH 122
R L+R + + +RFV K L S+P+H + ++ K L + I+ +
Sbjct: 61 RSPSLDRHVVKQNRVRFVQKLNTLLLSKPKHYIPIEILYKCRSYLCIENPLAILSMIRRY 120
Query: 123 PLLFQTYRHSDGKMWLGFTDLMEDL----------LAEEQCIMDSMEKDRV-DKVRRLLM 171
P +F+ + + + T + L LA ++ + S D++ K+++LLM
Sbjct: 121 PTIFELFTTPTPHLPMNATKPLSQLCVRLTSAASSLAMQELNLKSEISDKLATKLQKLLM 180
Query: 172 MSARNRIALSKIHHCRTLFGIPHDFRDRVAK-YPGFFRVVVESDGRRVLELVNWDPVLA 229
+S+ R+ LSK+ H FG P +FR R+ YP F+ V S G R LELV+ DP LA
Sbjct: 181 LSSHRRLLLSKLVHIAPDFGFPPNFRSRLCNDYPDKFKTVDTSYG-RALELVSSDPELA 238
>AT3G58520.2 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr3:21643921-21645277 REVERSE
LENGTH=406
Length = 406
Score = 57.8 bits (138), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 60/117 (51%), Gaps = 3/117 (2%)
Query: 122 HPLLFQTYRHSDGKMWLGF--TDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMSARNRIA 179
+P LF + H+ F TD L ++E+ I S E D V+++ R+LMM ++
Sbjct: 82 YPTLFHEFPHARYASLPCFKLTDTALMLDSQEEIIHQSHEADTVERLCRVLMMMRSKTVS 141
Query: 180 LSKIHHCRTLFGIPHDF-RDRVAKYPGFFRVVVESDGRRVLELVNWDPVLAVSALER 235
L +H + G+P ++ + V KYP F V S+G L+LV W A SAL++
Sbjct: 142 LRSLHSLKFDLGLPDNYEKTLVMKYPDHFCFVKASNGNPCLKLVKWRDEFAFSALQK 198
>AT5G45790.2 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr5:18572345-18573664 FORWARD
LENGTH=439
Length = 439
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 115 VSRFIQDHPLLFQTYRHSDGK-MWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMS 173
V FI +P F+ + H K + T+ + L+ EE+ ++ E D V +V++LL++S
Sbjct: 121 VGAFIGKYPHAFEIFTHPFSKNLCCKITEKFKVLIDEEENVVRECEVDAVKRVKKLLLLS 180
Query: 174 ARNRIALSKIHHCRTLFGIPHDFRDRV-AKYPGFFRVVVESDGRRVLELVNW-DPVLAVS 231
+ + + R G+P DFRD + AKY FR+V LELV+ D L V+
Sbjct: 181 KHGVLRVHALRLIRKELGLPEDFRDSILAKYSSEFRLV----DLETLELVDRDDESLCVA 236
Query: 232 ALE 234
+E
Sbjct: 237 KVE 239
>AT5G45790.1 | Symbols: | Ubiquitin carboxyl-terminal hydrolase
family protein | chr5:18572473-18573664 FORWARD
LENGTH=354
Length = 354
Score = 52.4 bits (124), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 7/123 (5%)
Query: 115 VSRFIQDHPLLFQTYRHSDGK-MWLGFTDLMEDLLAEEQCIMDSMEKDRVDKVRRLLMMS 173
V FI +P F+ + H K + T+ + L+ EE+ ++ E D V +V++LL++S
Sbjct: 36 VGAFIGKYPHAFEIFTHPFSKNLCCKITEKFKVLIDEEENVVRECEVDAVKRVKKLLLLS 95
Query: 174 ARNRIALSKIHHCRTLFGIPHDFRDRV-AKYPGFFRVVVESDGRRVLELVNW-DPVLAVS 231
+ + + R G+P DFRD + AKY FR+V LELV+ D L V+
Sbjct: 96 KHGVLRVHALRLIRKELGLPEDFRDSILAKYSSEFRLV----DLETLELVDRDDESLCVA 151
Query: 232 ALE 234
+E
Sbjct: 152 KVE 154