Miyakogusa Predicted Gene

Lj0g3v0227189.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0227189.1 Non Chatacterized Hit- tr|K4CXG6|K4CXG6_SOLLC
Uncharacterized protein OS=Solanum lycopersicum
GN=CIP,41.45,4e-16,seg,NULL,CUFF.14801.1
         (224 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G27060.1 | Symbols: TOR1, SPR2, CN | ARM repeat superfamily p...    82   3e-16
AT1G50890.1 | Symbols:  | ARM repeat superfamily protein | chr1:...    77   7e-15

>AT4G27060.1 | Symbols: TOR1, SPR2, CN | ARM repeat superfamily
           protein | chr4:13581581-13585070 REVERSE LENGTH=864
          Length = 864

 Score = 82.0 bits (201), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 59/121 (48%), Positives = 76/121 (62%), Gaps = 14/121 (11%)

Query: 1   MIEALQLWKKIAGKGDGSPNDGGNPESAVSSETSDLKKEIFEERKS---DPQVKEPSTSS 57
           + EALQLWKKI+GK      DG + +S +S+ +  L  E   E++S   D   KE S  S
Sbjct: 313 VTEALQLWKKISGK----YVDGASDDSKLSA-SEQLGSEKNGEKRSNLADLMKKEASDGS 367

Query: 58  S-NTDLTTKAKSAGISEKAVVILKKEAPVLSDKELNPEFFQKHEKRGSDDLPVEVVVPRR 116
           + + D  +K K     EKAV +LKK+APVLSDK+ NPEFFQ+ E+R S    VEVVVPRR
Sbjct: 368 TLSPDSASKGKGC-FPEKAVGLLKKKAPVLSDKDFNPEFFQRLERRQS----VEVVVPRR 422

Query: 117 C 117
           C
Sbjct: 423 C 423



 Score = 54.7 bits (130), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 30/75 (40%), Positives = 37/75 (49%), Gaps = 20/75 (26%)

Query: 155 LMQVERLHVDMMNRLQTFMDQSRDSMVSLENSVWGLERTVE------------------- 195
           L+Q+ER   ++MN LQ F+  S DSMV+LE  V GLER VE                   
Sbjct: 514 LLQLERQQTNLMNMLQEFIGGSHDSMVTLEGRVRGLERIVEDMARDLSISSGRRANLTAG 573

Query: 196 -AKYNGFKDYSNAKY 209
             KYN F +Y   KY
Sbjct: 574 FGKYNSFANYPTGKY 588


>AT1G50890.1 | Symbols:  | ARM repeat superfamily protein |
           chr1:18862295-18865752 REVERSE LENGTH=821
          Length = 821

 Score = 77.4 bits (189), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 49/114 (42%), Positives = 67/114 (58%), Gaps = 7/114 (6%)

Query: 3   EALQLWKKIAGKGDGSPNDGGNPESAVSSETSDLKKEIFEERKSDPQVKEPSTSSSNTDL 62
           EAL +WK IAGKG+    D    +  VSSE   L++      ++D    E +        
Sbjct: 312 EALNVWKNIAGKGESGTMDD---QKDVSSEQCILERN----GETDSVSCEEAGLVMQGSC 364

Query: 63  TTKAKSAGISEKAVVILKKEAPVLSDKELNPEFFQKHEKRGSDDLPVEVVVPRR 116
              + S+    KAV+IL+K+AP L+ K+LNPEFFQK EKRGS D+PVEV++P R
Sbjct: 365 DGLSSSSDSISKAVLILRKKAPRLTGKDLNPEFFQKLEKRGSGDMPVEVILPSR 418