Miyakogusa Predicted Gene

Lj0g3v0225769.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0225769.1 Non Chatacterized Hit- tr|D7U3Z2|D7U3Z2_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,32,0.000005,seg,NULL,CUFF.14696.1
         (172 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G40400.1 | Symbols:  | Pentatricopeptide repeat (PPR) superfa...   129   8e-31

>AT5G40400.1 | Symbols:  | Pentatricopeptide repeat (PPR)
           superfamily protein | chr5:16166444-16168276 FORWARD
           LENGTH=610
          Length = 610

 Score =  129 bits (325), Expect = 8e-31,   Method: Composition-based stats.
 Identities = 62/116 (53%), Positives = 82/116 (70%), Gaps = 2/116 (1%)

Query: 49  KPISSPFYNLLPPTQNPHNIVNLISSLLKQKSFHLSL--FQNDIKGILPHMGTHEISRVL 106
           KPI +P YNLLP +QNP  IV++I S L    + + L   ++++K ++PH+G  EISRVL
Sbjct: 27  KPILNPLYNLLPQSQNPSKIVDVICSTLNHSDYSVLLPNLRDEVKSLIPHLGYPEISRVL 86

Query: 107 LRCQSDHSSALTFFNWVKNDLGVKPAVQNYCVIVHILAWSRVFSKAMKLLCELIHL 162
           LR QSD S A+TFF WVK DLG +P V NYC+++HIL  S+ F  AM+ LCELI L
Sbjct: 87  LRFQSDASRAITFFKWVKFDLGKRPNVGNYCLLLHILVSSKKFPLAMQFLCELIEL 142