Miyakogusa Predicted Gene

Lj0g3v0225609.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0225609.1 Non Chatacterized Hit- tr|I3SB42|I3SB42_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,99.5,0,POLY-A
BINDING PROTEIN 2,NULL; RNA-binding domain, RBD,NULL;
coiled-coil,NULL; RRM,RNA recognition m,CUFF.14671.1
         (200 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G65260.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   267   4e-72
AT5G10350.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   258   2e-69
AT5G51120.1 | Symbols: PABN1, ATPABN1 | polyadenylate-binding pr...   240   4e-64
AT5G10350.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   238   2e-63
AT5G51120.2 | Symbols: PABN1 | polyadenylate-binding protein 1 |...   224   2e-59
AT5G51120.3 | Symbols: PABN1 | polyadenylate-binding protein 1 |...   192   8e-50
AT5G10350.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...   176   7e-45
AT3G12640.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) famil...    64   7e-11
AT2G24350.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) famil...    55   4e-08
AT2G16940.1 | Symbols:  | Splicing factor, CC1-like | chr2:73428...    53   1e-07
AT2G16940.2 | Symbols:  | Splicing factor, CC1-like | chr2:73428...    53   1e-07
AT2G16940.3 | Symbols:  | Splicing factor, CC1-like | chr2:73428...    53   1e-07
AT3G55460.1 | Symbols: SCL30, At-SCL30 | SC35-like splicing fact...    52   3e-07
AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like...    50   7e-07
AT2G35410.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) famil...    50   7e-07
AT3G23900.2 | Symbols:  | RNA recognition motif (RRM)-containing...    50   8e-07
AT3G23900.3 | Symbols:  | RNA recognition motif (RRM)-containing...    50   9e-07
AT3G23900.1 | Symbols:  | RNA recognition motif (RRM)-containing...    50   9e-07
AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 | chr2:1...    50   1e-06
AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like ...    49   2e-06
AT5G09880.1 | Symbols:  | Splicing factor, CC1-like | chr5:30816...    49   3e-06
AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protei...    48   5e-06
AT1G32790.1 | Symbols: CID11 | CTC-interacting domain 11 | chr1:...    47   9e-06

>AT5G65260.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:26080501-26082984 REVERSE LENGTH=220
          Length = 220

 Score =  267 bits (682), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 136/179 (75%), Positives = 150/179 (83%), Gaps = 2/179 (1%)

Query: 21  LDDMKKRLKEMEDEAAALREMQAKVEKEMGSVPDPANASASQTNREEVDSRSVFVGNVDY 80
           LD+MKKRLKEMEDEAAALREMQAKVEKEMG+  DPA+ +A+Q  +EEVD+RSVFVGNVDY
Sbjct: 43  LDEMKKRLKEMEDEAAALREMQAKVEKEMGA-QDPASIAANQAGKEEVDARSVFVGNVDY 101

Query: 81  SCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALALNESELHGRQL 140
           +CTPEEVQQHFQ+CGTV+RVTI TDKFGQPKG+AYVEF+EVEAVQEAL LNESELHGRQL
Sbjct: 102 ACTPEEVQQHFQTCGTVHRVTILTDKFGQPKGFAYVEFVEVEAVQEALQLNESELHGRQL 161

Query: 141 KVSGKRTNVPGMKQFRPRAPNPYMGFRGRALXXXXXXXXXXYGYGKVPRFRMGMRYSPY 199
           KV  KRTNVPG+KQFR R  NPYMG+R R            YGYGK PRFR  MRY PY
Sbjct: 162 KVLQKRTNVPGLKQFRGRRFNPYMGYRFRR-PFMSPYMYSPYGYGKAPRFRRPMRYMPY 219


>AT5G10350.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:3255674-3257746 REVERSE LENGTH=217
          Length = 217

 Score =  258 bits (658), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 133/197 (67%), Positives = 151/197 (76%), Gaps = 3/197 (1%)

Query: 3   NDDVDMVGXXXXXXXXXXLDDMKKRLKEMEDEAAALREMQAKVEKEMGSVPDPANASASQ 62
           + D+DM            L +MK+RLKEME+EAAALREMQAKVEKEMG+  DPA+ +A+Q
Sbjct: 23  DPDIDM--SAADEDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQDPASMAANQ 80

Query: 63  TNREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVE 122
             +EEVD+RSV+VGNVDY+CTPEEVQ HFQ+CGTVNRVTI  DKFGQPKG+AYVEF+EVE
Sbjct: 81  EGKEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVE 140

Query: 123 AVQEALALNESELHGRQLKVSGKRTNVPGMKQFRPRAPNPYMGFRGRALXXXXXXXXXXY 182
           AVQEAL LNESELHGRQLKVS KRTNVPGMKQ+ P   NP MG+R R            Y
Sbjct: 141 AVQEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRR-PFVPPYFYSPY 199

Query: 183 GYGKVPRFRMGMRYSPY 199
           GYGK PRFR  MRY PY
Sbjct: 200 GYGKAPRFRRPMRYMPY 216


>AT5G51120.1 | Symbols: PABN1, ATPABN1 | polyadenylate-binding
           protein 1 | chr5:20779760-20781241 FORWARD LENGTH=227
          Length = 227

 Score =  240 bits (613), Expect = 4e-64,   Method: Compositional matrix adjust.
 Identities = 122/179 (68%), Positives = 140/179 (78%), Gaps = 5/179 (2%)

Query: 21  LDDMKKRLKEMEDEAAALREMQAKVEKEMGSVPDPANASASQTNREEVDSRSVFVGNVDY 80
           L+DMKKR+KE+E+EA ALREMQAK EK+MG+  DP+    S   +EEVDSRS++VGNVDY
Sbjct: 54  LEDMKKRIKEIEEEAGALREMQAKAEKDMGASQDPSGG-VSAAEKEEVDSRSIYVGNVDY 112

Query: 81  SCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALALNESELHGRQL 140
           +CTPEEVQQHFQSCGTVNRVTI TDKFGQPKG+AYVEF+EVEAVQ +L LNESELHGRQ+
Sbjct: 113 ACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQI 172

Query: 141 KVSGKRTNVPGMKQFRPRAPNPYMGFRGRALXXXXXXXXXXYGYGKVPRFRMGMRYSPY 199
           KVS KRTNVPGM+QFR R   P+   RG             Y YG+VPRFR  MRY PY
Sbjct: 173 KVSAKRTNVPGMRQFRGRG-RPFRPMRG---FMPGVPFYPPYAYGRVPRFRRPMRYRPY 227


>AT5G10350.2 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:3255808-3257746 REVERSE LENGTH=202
          Length = 202

 Score =  238 bits (607), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 119/165 (72%), Positives = 136/165 (82%), Gaps = 2/165 (1%)

Query: 5   DVDMVGXXXXXXXXXXLDDMKKRLKEMEDEAAALREMQAKVEKEMGSVPDPANASASQTN 64
           D+DM            L +MK+RLKEME+EAAALREMQAKVEKEMG+  DPA+ +A+Q  
Sbjct: 25  DIDM--SAADEDAVTELAEMKRRLKEMEEEAAALREMQAKVEKEMGATQDPASMAANQEG 82

Query: 65  REEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAV 124
           +EEVD+RSV+VGNVDY+CTPEEVQ HFQ+CGTVNRVTI  DKFGQPKG+AYVEF+EVEAV
Sbjct: 83  KEEVDARSVYVGNVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAV 142

Query: 125 QEALALNESELHGRQLKVSGKRTNVPGMKQFRPRAPNPYMGFRGR 169
           QEAL LNESELHGRQLKVS KRTNVPGMKQ+ P   NP MG+R R
Sbjct: 143 QEALQLNESELHGRQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFR 187


>AT5G51120.2 | Symbols: PABN1 | polyadenylate-binding protein 1 |
           chr5:20779760-20781241 FORWARD LENGTH=265
          Length = 265

 Score =  224 bits (572), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 121/216 (56%), Positives = 140/216 (64%), Gaps = 41/216 (18%)

Query: 21  LDDMKKRLKEMEDEAAALREMQAKVEKEMGSV---------------------------- 52
           L+DMKKR+KE+E+EA ALREMQAK EK+MG+                             
Sbjct: 54  LEDMKKRIKEIEEEAGALREMQAKAEKDMGASQGLKLVLLIMILLWVYILESFSESMNLS 113

Query: 53  ---------PDPANASASQTNREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIR 103
                     +  N+  S   +EEVDSRS++VGNVDY+CTPEEVQQHFQSCGTVNRVTI 
Sbjct: 114 RNLLEFEYEKEIINSGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTIL 173

Query: 104 TDKFGQPKGYAYVEFLEVEAVQEALALNESELHGRQLKVSGKRTNVPGMKQFRPRAPNPY 163
           TDKFGQPKG+AYVEF+EVEAVQ +L LNESELHGRQ+KVS KRTNVPGM+QFR R   P+
Sbjct: 174 TDKFGQPKGFAYVEFVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFRGRG-RPF 232

Query: 164 MGFRGRALXXXXXXXXXXYGYGKVPRFRMGMRYSPY 199
              RG             Y YG+VPRFR  MRY PY
Sbjct: 233 RPMRG---FMPGVPFYPPYAYGRVPRFRRPMRYRPY 265


>AT5G51120.3 | Symbols: PABN1 | polyadenylate-binding protein 1 |
           chr5:20779346-20781241 FORWARD LENGTH=142
          Length = 142

 Score =  192 bits (489), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 97/142 (68%), Positives = 108/142 (76%), Gaps = 4/142 (2%)

Query: 58  ASASQTNREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVE 117
              S   +EEVDSRS++VGNVDY+CTPEEVQQHFQSCGTVNRVTI TDKFGQPKG+AYVE
Sbjct: 5   GGVSAAEKEEVDSRSIYVGNVDYACTPEEVQQHFQSCGTVNRVTILTDKFGQPKGFAYVE 64

Query: 118 FLEVEAVQEALALNESELHGRQLKVSGKRTNVPGMKQFRPRAPNPYMGFRGRALXXXXXX 177
           F+EVEAVQ +L LNESELHGRQ+KVS KRTNVPGM+QFR R   P+   RG         
Sbjct: 65  FVEVEAVQNSLILNESELHGRQIKVSAKRTNVPGMRQFRGRG-RPFRPMRG---FMPGVP 120

Query: 178 XXXXYGYGKVPRFRMGMRYSPY 199
               Y YG+VPRFR  MRY PY
Sbjct: 121 FYPPYAYGRVPRFRRPMRYRPY 142


>AT5G10350.3 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr5:3255674-3256463 REVERSE LENGTH=128
          Length = 128

 Score =  176 bits (447), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 89/123 (72%), Positives = 96/123 (78%), Gaps = 1/123 (0%)

Query: 77  NVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALALNESELH 136
           +VDY+CTPEEVQ HFQ+CGTVNRVTI  DKFGQPKG+AYVEF+EVEAVQEAL LNESELH
Sbjct: 6   HVDYACTPEEVQLHFQTCGTVNRVTILMDKFGQPKGFAYVEFVEVEAVQEALQLNESELH 65

Query: 137 GRQLKVSGKRTNVPGMKQFRPRAPNPYMGFRGRALXXXXXXXXXXYGYGKVPRFRMGMRY 196
           GRQLKVS KRTNVPGMKQ+ P   NP MG+R R            YGYGK PRFR  MRY
Sbjct: 66  GRQLKVSPKRTNVPGMKQYHPGRFNPSMGYRFRR-PFVPPYFYSPYGYGKAPRFRRPMRY 124

Query: 197 SPY 199
            PY
Sbjct: 125 MPY 127


>AT3G12640.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) family
           protein | chr3:4014455-4017675 FORWARD LENGTH=638
          Length = 638

 Score = 63.9 bits (154), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 31/78 (39%), Positives = 45/78 (57%), Gaps = 1/78 (1%)

Query: 66  EEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD-KFGQPKGYAYVEFLEVEAV 124
           E+  SR++FV NV +  T + + +HF   G V +  I TD   GQP G AY+EF   EA 
Sbjct: 475 EDASSRTIFVANVHFGATKDSLSRHFNKFGEVLKAFIVTDPATGQPSGSAYIEFTRKEAA 534

Query: 125 QEALALNESELHGRQLKV 142
           + AL+L+ +    R LK+
Sbjct: 535 ENALSLDGTSFMSRILKI 552


>AT2G24350.1 | Symbols:  | RNA binding (RRM/RBD/RNP motifs) family
           protein | chr2:10361239-10364223 FORWARD LENGTH=537
          Length = 537

 Score = 55.1 bits (131), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 41/126 (32%), Positives = 70/126 (55%), Gaps = 9/126 (7%)

Query: 21  LDDMKKRLKEMEDEAAALREMQAK-VEKEMGSVPDPANASASQTNREEV-DSRSVFVGNV 78
           + ++K++++E+E     LR +Q+K ++K+      P+  S     +E+V +SR + V NV
Sbjct: 397 IKNVKEKMQELE-----LRIIQSKQLKKQKVEERKPSPQSGESQYQEDVSESRVIHVTNV 451

Query: 79  DYSCTPEEVQQHFQS-CGTVNRVTIRTDKFG-QPKGYAYVEFLEVEAVQEALALNESELH 136
            Y+   E +   F S CG V  V + TD     PKG A+V F   E+V +A+AL+ +  +
Sbjct: 452 YYAAKKEAISMFFSSKCGAVQNVIVVTDPVTRHPKGTAFVTFATKESVGKAVALSGTMFY 511

Query: 137 GRQLKV 142
            R +KV
Sbjct: 512 SRPIKV 517


>AT2G16940.1 | Symbols:  | Splicing factor, CC1-like |
           chr2:7342869-7347052 REVERSE LENGTH=561
          Length = 561

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 53/84 (63%), Gaps = 3/84 (3%)

Query: 70  SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALA 129
           +R ++VGN+  + + +++++ F+S G+V  V +  D+ G  KG+ +V+F  +E  + AL 
Sbjct: 284 ARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALN 343

Query: 130 LN-ESELHGRQLKVSG--KRTNVP 150
           LN + E+ GR +KVS    +T VP
Sbjct: 344 LNGQLEIAGRAIKVSAVTDQTEVP 367


>AT2G16940.2 | Symbols:  | Splicing factor, CC1-like |
           chr2:7342869-7347052 REVERSE LENGTH=610
          Length = 610

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 53/84 (63%), Gaps = 3/84 (3%)

Query: 70  SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALA 129
           +R ++VGN+  + + +++++ F+S G+V  V +  D+ G  KG+ +V+F  +E  + AL 
Sbjct: 333 ARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALN 392

Query: 130 LN-ESELHGRQLKVSG--KRTNVP 150
           LN + E+ GR +KVS    +T VP
Sbjct: 393 LNGQLEIAGRAIKVSAVTDQTEVP 416


>AT2G16940.3 | Symbols:  | Splicing factor, CC1-like |
           chr2:7342869-7347052 REVERSE LENGTH=599
          Length = 599

 Score = 53.1 bits (126), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 53/84 (63%), Gaps = 3/84 (3%)

Query: 70  SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALA 129
           +R ++VGN+  + + +++++ F+S G+V  V +  D+ G  KG+ +V+F  +E  + AL 
Sbjct: 322 ARRLYVGNLHINMSEDDLRKVFESFGSVELVQVPRDETGLCKGFGFVQFARLEDARNALN 381

Query: 130 LN-ESELHGRQLKVSG--KRTNVP 150
           LN + E+ GR +KVS    +T VP
Sbjct: 382 LNGQLEIAGRAIKVSAVTDQTEVP 405


>AT3G55460.1 | Symbols: SCL30, At-SCL30 | SC35-like splicing factor
           30 | chr3:20561024-20563502 FORWARD LENGTH=262
          Length = 262

 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 73  VFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF-GQPKGYAYVEFLEVEAVQEA-LAL 130
           + V N+   C PEE+++ F+  G V  V I  D + GQP+G+A+VEF++     EA  ++
Sbjct: 49  LLVRNIPLDCRPEELREPFERFGPVRDVYIPRDYYSGQPRGFAFVEFVDAYDAGEAQRSM 108

Query: 131 NESELHGRQLKV 142
           N     GR++ V
Sbjct: 109 NRRSFAGREITV 120


>AT3G18610.1 | Symbols: PARLL1, ATNUC-L2, NUC-L2 | nucleolin like 2
           | chr3:6404270-6407822 REVERSE LENGTH=636
          Length = 636

 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 4/89 (4%)

Query: 56  ANASASQTNREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKF--GQPKGY 113
           A    + TN+ +  S+++F GN+ Y     +++  F+  G V  V +R   F  G  KGY
Sbjct: 369 AKQPKTPTNQTQGGSKTLFAGNLSYQIARSDIENFFKEAGEV--VDVRLSSFDDGSFKGY 426

Query: 114 AYVEFLEVEAVQEALALNESELHGRQLKV 142
            ++EF   E  Q+AL +N   L GR +++
Sbjct: 427 GHIEFASPEEAQKALEMNGKLLLGRDVRL 455


>AT2G35410.1 | Symbols:  | RNA-binding (RRM/RBD/RNP motifs) family
           protein | chr2:14898341-14899590 FORWARD LENGTH=308
          Length = 308

 Score = 50.4 bits (119), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 49/92 (53%), Gaps = 5/92 (5%)

Query: 71  RSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEAL-A 129
           R +FV N+ +S +  ++ + F  CGTVN V I   K G+ +G+A+V     E  Q A+  
Sbjct: 95  RKLFVFNLPWSMSVNDISELFGQCGTVNNVEIIRQKDGKNRGFAFVTMASGEEAQAAIDK 154

Query: 130 LNESELHGRQLKVSGKRTNVPGMKQFRPRAPN 161
            +  ++ GR + VS  R      K+  P++PN
Sbjct: 155 FDTFQVSGRIISVSFARR----FKKPTPKSPN 182


>AT3G23900.2 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr3:8632717-8635852 REVERSE LENGTH=934
          Length = 934

 Score = 50.4 bits (119), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 13/104 (12%)

Query: 40  EMQAKVEKEMGSVPDPANASASQTNREEVDSRSVF-VGNVDYSCTPEEVQQHFQSCGTVN 98
           +MQA+ +   GS+  P          E  D +    V N+  S T E+++Q F  CGTV 
Sbjct: 326 QMQAQAQSNKGSLGSPEKG-------ENGDLKKFLQVSNLSPSLTTEQLRQLFSFCGTVV 378

Query: 99  RVTIRTDKFGQPKGYAYVEFLEVEAVQEALALNESELHGRQLKV 142
             +I TD     K  AY+E+   E    ALALN +E+ GR L V
Sbjct: 379 DCSI-TDS----KHIAYIEYSNSEEATAALALNNTEVFGRALNV 417


>AT3G23900.3 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr3:8631941-8635852 REVERSE LENGTH=987
          Length = 987

 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 13/104 (12%)

Query: 40  EMQAKVEKEMGSVPDPANASASQTNREEVDSRSVF-VGNVDYSCTPEEVQQHFQSCGTVN 98
           +MQA+ +   GS+  P          E  D +    V N+  S T E+++Q F  CGTV 
Sbjct: 326 QMQAQAQSNKGSLGSPEKG-------ENGDLKKFLQVSNLSPSLTTEQLRQLFSFCGTVV 378

Query: 99  RVTIRTDKFGQPKGYAYVEFLEVEAVQEALALNESELHGRQLKV 142
             +I TD     K  AY+E+   E    ALALN +E+ GR L V
Sbjct: 379 DCSI-TDS----KHIAYIEYSNSEEATAALALNNTEVFGRALNV 417


>AT3G23900.1 | Symbols:  | RNA recognition motif (RRM)-containing
           protein | chr3:8631941-8635852 REVERSE LENGTH=987
          Length = 987

 Score = 50.4 bits (119), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 37/104 (35%), Positives = 51/104 (49%), Gaps = 13/104 (12%)

Query: 40  EMQAKVEKEMGSVPDPANASASQTNREEVDSRSVF-VGNVDYSCTPEEVQQHFQSCGTVN 98
           +MQA+ +   GS+  P          E  D +    V N+  S T E+++Q F  CGTV 
Sbjct: 326 QMQAQAQSNKGSLGSPEKG-------ENGDLKKFLQVSNLSPSLTTEQLRQLFSFCGTVV 378

Query: 99  RVTIRTDKFGQPKGYAYVEFLEVEAVQEALALNESELHGRQLKV 142
             +I TD     K  AY+E+   E    ALALN +E+ GR L V
Sbjct: 379 DCSI-TDS----KHIAYIEYSNSEEATAALALNNTEVFGRALNV 417


>AT2G36660.1 | Symbols: PAB7 | poly(A) binding protein 7 |
           chr2:15361476-15364398 REVERSE LENGTH=609
          Length = 609

 Score = 50.1 bits (118), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 23/73 (31%), Positives = 43/73 (58%), Gaps = 1/73 (1%)

Query: 72  SVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKGYAYVEFLEVEAVQEALALN 131
           +++V NV+ + T EE+++HF  CGT+    +  D+ G+ KG+ +V F   E   +A+   
Sbjct: 305 NIYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSKGFGFVCFSTPEEAIDAVKTF 364

Query: 132 ESEL-HGRQLKVS 143
             ++ HG+ L V+
Sbjct: 365 HGQMFHGKPLYVA 377


>AT1G48920.1 | Symbols: ATNUC-L1, PARL1, NUC-L1 | nucleolin like 1 |
           chr1:18098186-18101422 FORWARD LENGTH=557
          Length = 557

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 43/74 (58%), Gaps = 7/74 (9%)

Query: 69  DSRSVFVGNVDYSCTPEEVQ----QHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLEVEA 123
           D + +FV   D S + ++++    +HF SCG +  V++  D+  G  KG AY+EF   E 
Sbjct: 399 DEKKIFVKGFDASLSEDDIKNTLREHFSSCGEIKNVSVPIDRDTGNSKGIAYLEF--SEG 456

Query: 124 VQEALALNESELHG 137
            ++AL LN S++ G
Sbjct: 457 KEKALELNGSDMGG 470


>AT5G09880.1 | Symbols:  | Splicing factor, CC1-like |
           chr5:3081646-3085179 REVERSE LENGTH=527
          Length = 527

 Score = 48.5 bits (114), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/99 (31%), Positives = 59/99 (59%), Gaps = 8/99 (8%)

Query: 53  PDPANASASQTNREEVD-----SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTD-K 106
           P  A  + +Q+N   V       R ++VGN+ ++ +  +++Q F++ G V  V +  D +
Sbjct: 242 PSEAEKNLAQSNSTTVGGTGPADRKLYVGNLHFNMSELQLRQIFEAFGPVELVQLPLDPE 301

Query: 107 FGQPKGYAYVEFLEVEAVQEA-LALN-ESELHGRQLKVS 143
            GQ KG+ +++F+++E  + A +ALN + E+ GR +KVS
Sbjct: 302 TGQCKGFGFIQFVQLEHSKAAQIALNGKLEIAGRTIKVS 340


>AT1G74230.1 | Symbols: GR-RBP5 | glycine-rich RNA-binding protein 5
           | chr1:27915346-27916857 FORWARD LENGTH=289
          Length = 289

 Score = 47.8 bits (112), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 41/75 (54%), Gaps = 1/75 (1%)

Query: 70  SRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDK-FGQPKGYAYVEFLEVEAVQEAL 128
           S  +FVG + YS     +++ F   G V    I  D+  G+ +G+A+V F   E    A+
Sbjct: 33  SSKIFVGGISYSTDEFGLREAFSKYGEVVDAKIIVDRETGRSRGFAFVTFTSTEEASNAM 92

Query: 129 ALNESELHGRQLKVS 143
            L+  +LHGR+++V+
Sbjct: 93  QLDGQDLHGRRIRVN 107


>AT1G32790.1 | Symbols: CID11 | CTC-interacting domain 11 |
           chr1:11875174-11877188 REVERSE LENGTH=358
          Length = 358

 Score = 47.0 bits (110), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 35/107 (32%), Positives = 51/107 (47%), Gaps = 8/107 (7%)

Query: 57  NASASQTNREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRVTIRTDKFGQPKG---Y 113
           NA  S   RE+V  R+V+V ++D   T E++   F SCG V    I     G P     +
Sbjct: 159 NARTSMAQREDVIRRTVYVSDLDQQVTEEQLAGLFVSCGQVVDCRI----CGDPNSVLRF 214

Query: 114 AYVEFLEVEAVQEALALNESELHGRQLKVSGKRTNV-PGMKQFRPRA 159
           A++EF + E    AL L+ + L    +KV   +T + P    F PR 
Sbjct: 215 AFIEFTDEEGAMTALNLSGTMLGFYPVKVLPSKTAIAPVNPTFLPRT 261