Miyakogusa Predicted Gene

Lj0g3v0224509.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0224509.1 Non Chatacterized Hit- tr|B8B0L3|B8B0L3_ORYSI
Putative uncharacterized protein OS=Oryza sativa
subsp,51.85,3e-17,FAR1,FAR1 DNA binding domain,CUFF.14608.1
         (150 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G59470.2 | Symbols:  | Far-red impaired responsive (FAR1) fam...    57   4e-09
AT3G59470.1 | Symbols:  | Far-red impaired responsive (FAR1) fam...    57   4e-09
AT3G06250.1 | Symbols: FRS7 | FAR1-related sequence 7 | chr3:188...    55   2e-08
AT5G18960.1 | Symbols: FRS12 | FAR1-related sequence 12 | chr5:6...    53   6e-08

>AT3G59470.2 | Symbols:  | Far-red impaired responsive (FAR1) family
           protein | chr3:21979099-21980097 REVERSE LENGTH=251
          Length = 251

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query: 58  FVAAQRTSNKDDEWKPQVGLLFNTLEETWKLWNGYGGKIGFNVRKQYFNKNK-DGMILTI 116
              A  T  + DE  P VG  F +       +N Y  K+GF +R    ++++ DG  +  
Sbjct: 57  LAVADMTEAQGDE--PYVGQEFESEAAAHGFYNAYATKVGFVIRVSKLSRSRHDGSPIGR 114

Query: 117 RYVCSKEGIRKPDKRDCVTTKHRLETRTNCPARI 150
           + VC+KEG R P KRD V  + R ETR  C A I
Sbjct: 115 QLVCNKEGYRLPSKRDKV-IRQRAETRVGCKAMI 147


>AT3G59470.1 | Symbols:  | Far-red impaired responsive (FAR1) family
           protein | chr3:21979099-21980097 REVERSE LENGTH=251
          Length = 251

 Score = 57.0 bits (136), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 47/94 (50%), Gaps = 4/94 (4%)

Query: 58  FVAAQRTSNKDDEWKPQVGLLFNTLEETWKLWNGYGGKIGFNVRKQYFNKNK-DGMILTI 116
              A  T  + DE  P VG  F +       +N Y  K+GF +R    ++++ DG  +  
Sbjct: 57  LAVADMTEAQGDE--PYVGQEFESEAAAHGFYNAYATKVGFVIRVSKLSRSRHDGSPIGR 114

Query: 117 RYVCSKEGIRKPDKRDCVTTKHRLETRTNCPARI 150
           + VC+KEG R P KRD V  + R ETR  C A I
Sbjct: 115 QLVCNKEGYRLPSKRDKV-IRQRAETRVGCKAMI 147


>AT3G06250.1 | Symbols: FRS7 | FAR1-related sequence 7 |
           chr3:1889771-1892065 REVERSE LENGTH=764
          Length = 764

 Score = 55.1 bits (131), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 42/84 (50%), Gaps = 14/84 (16%)

Query: 68  DDEWKPQVGLLFNTLEETWKLWNGYGGKIGFNVRK-QYFNKNKDGMILTIRYVCSKEGIR 126
           D   +P VGL F+T EE    +N Y  + GF VR  Q +    DG + + R+VCSKEG  
Sbjct: 23  DSGLEPYVGLEFDTAEEARDYYNSYATRTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGF- 81

Query: 127 KPDKRDCVTTKHRLETRTNCPARI 150
                       +L +RT CPA I
Sbjct: 82  ------------QLNSRTGCPAFI 93



 Score = 51.6 bits (122), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 1/63 (1%)

Query: 72  KPQVGLLFNTLEETWKLWNGYGGKIGFNVR-KQYFNKNKDGMILTIRYVCSKEGIRKPDK 130
           +P  GL FN+  E  + +  Y   +GF VR  Q F    DG I + R+VCSKEG + P +
Sbjct: 189 EPYAGLEFNSANEACQFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSKEGFQHPSR 248

Query: 131 RDC 133
             C
Sbjct: 249 MGC 251


>AT5G18960.1 | Symbols: FRS12 | FAR1-related sequence 12 |
           chr5:6330556-6333071 FORWARD LENGTH=788
          Length = 788

 Score = 53.1 bits (126), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 14/80 (17%)

Query: 72  KPQVGLLFNTLEETWKLWNGYGGKIGFNVRK-QYFNKNKDGMILTIRYVCSKEGIRKPDK 130
           +P VGL F+T EE  + +N Y  + GF VR  Q +    DG + + R+VCSKEG      
Sbjct: 42  EPYVGLEFDTAEEAREFYNAYAARTGFKVRTGQLYRSRTDGTVSSRRFVCSKEGF----- 96

Query: 131 RDCVTTKHRLETRTNCPARI 150
                   +L +RT C A I
Sbjct: 97  --------QLNSRTGCTAFI 108



 Score = 48.5 bits (114), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 33/63 (52%), Gaps = 1/63 (1%)

Query: 72  KPQVGLLFNTLEETWKLWNGYGGKIGFNVR-KQYFNKNKDGMILTIRYVCSKEGIRKPDK 130
           +P  GL F +  E  + +  Y   +GF VR  Q F    DG I + R+VCS+EG + P +
Sbjct: 210 EPYAGLEFGSANEACQFYQAYAEVVGFRVRIGQLFRSKVDGSITSRRFVCSREGFQHPSR 269

Query: 131 RDC 133
             C
Sbjct: 270 MGC 272