Miyakogusa Predicted Gene

Lj0g3v0224379.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0224379.1 Non Chatacterized Hit- tr|I0YX76|I0YX76_9CHLO
Uncharacterized protein OS=Coccomyxa subellipsoidea
C-,31.16,0.00000000000006,no description,Zinc finger,
RING/FYVE/PHD-type; no description,Tetratricopeptide-like helical;
Ring ,CUFF.14613.1
         (365 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G54360.1 | Symbols:  | zinc ion binding | chr3:20128570-20131...   464   e-131

>AT3G54360.1 | Symbols:  | zinc ion binding | chr3:20128570-20131581
           REVERSE LENGTH=405
          Length = 405

 Score =  464 bits (1194), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 232/372 (62%), Positives = 275/372 (73%), Gaps = 17/372 (4%)

Query: 5   CPFVKAARPDDNNGSK---------------KPGEMSIKHQVEPDSKVKKEANDSASASP 49
           CPF KAARPDD +  K               +P E   K   E +  + K++ DSA+   
Sbjct: 31  CPFSKAARPDDASARKQGETTASGCPFSKSARPDENGSKGCPEQEGNLNKDSTDSATVPA 90

Query: 50  KCPFGYDSQTFKLGPLSCMVCQALLFDTSTCVPCSHVFCKACVSRFKDCPLCGADIVKSE 109
           KCPFGYDSQTFKLGP SCM+CQALL+++S CVPC+HVFCK C++RFKDCPLCGADI   E
Sbjct: 91  KCPFGYDSQTFKLGPFSCMLCQALLYESSRCVPCTHVFCKVCLTRFKDCPLCGADIESIE 150

Query: 110 PDANIQGVVDRFIEGHGRIKRSV--SSDKGEEATESKSVIYEDVSLERGSFLVQQAMRAF 167
            D N+Q +VD+FIEGH RIKRSV   ++K E   ++K VIY DVS+ERGSFLVQQAMRAF
Sbjct: 151 VDENLQKMVDQFIEGHARIKRSVVNGTEKEEVENDNKKVIYADVSMERGSFLVQQAMRAF 210

Query: 168 RAQNLESAKSRLSLCAADIRSQLEKVGNSSELCSQLGAVLGMLGDCCRAIGDASSAVTYF 227
            AQN ESAKSRL++C  DIR QL + GN+ ELCSQLGAVLGMLGDC RA+GD+SSAV +F
Sbjct: 211 SAQNYESAKSRLAMCTEDIRDQLGREGNTPELCSQLGAVLGMLGDCSRAMGDSSSAVKHF 270

Query: 228 EESVEFLSKLPKDDLEITHTLSVSLNKIGDLKYYDGDLRAARSYYFQSLNVRRDVMKHNS 287
           EESVEFL KLP +DLEITHTLSVSLNKIGDLKYYD DL+AARSYY ++LNVRRD MKH+ 
Sbjct: 271 EESVEFLMKLPLNDLEITHTLSVSLNKIGDLKYYDEDLQAARSYYDRALNVRRDAMKHHP 330

Query: 288 NVTSQVLDVAVSLAKVADVDRNIGDEKLATDGFQEAIDXXXXXXXXXXXXXXXQRRLSVL 347
           N  SQ+LDVAVSLAKVAD+DR + +E  ATDGF+E +                QRRLSVL
Sbjct: 331 NAPSQILDVAVSLAKVADIDRTLQNEVAATDGFKEGMRLLESLKLDSEDSALEQRRLSVL 390

Query: 348 DFLRNQLADKTE 359
           +FL+ Q+    E
Sbjct: 391 EFLKKQVETDAE 402