Miyakogusa Predicted Gene
- Lj0g3v0224239.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0224239.1 Non Chatacterized Hit- tr|K3Y106|K3Y106_SETIT
Uncharacterized protein OS=Setaria italica
GN=Si007868,32.17,7e-18,seg,NULL,CUFF.14587.1
(346 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT4G20190.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 131 8e-31
AT1G30850.1 | Symbols: RSH4 | root hair specific 4 | chr1:109851... 110 2e-24
AT2G34910.1 | Symbols: | BEST Arabidopsis thaliana protein matc... 99 4e-21
AT5G44660.1 | Symbols: | unknown protein; BEST Arabidopsis thal... 90 3e-18
>AT4G20190.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT5G44660.1); Has 271 Blast hits to 209 proteins
in 52 species: Archae - 0; Bacteria - 15; Metazoa - 63;
Fungi - 14; Plants - 48; Viruses - 3; Other Eukaryotes -
128 (source: NCBI BLink). | chr4:10906508-10907677
REVERSE LENGTH=389
Length = 389
Score = 131 bits (329), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 122/409 (29%), Positives = 168/409 (41%), Gaps = 113/409 (27%)
Query: 4 EPKISTNKSSQQ---ENRIMVDALSLNYDSALPNVRTTWATTDFHLPSLQAPKTKFMSLS 60
EPKI K+S Q E RI VD SL + ++ + LP KTKF+S S
Sbjct: 28 EPKILIKKTSMQSVSERRISVDPQSLLSRNGSFDMIVSRPRDIDDLPLDHQMKTKFVSCS 87
Query: 61 LPRTTWATTDFHLPSLQAPKPKFMXXXXXXXXXXXXXXXXXXXXXXXXXXXESPCQASNL 120
LP + SP +S
Sbjct: 88 LPNSA---------------------------------------------ATSPRNSSIH 102
Query: 121 IFKDRHVIQEIHLR---------RRSKSYGEARASAPFDEFDLCLAKPNAMEHNKHDYS- 170
+KDR Q + L RRSKS GE RA P +FD+ L K HN++ +
Sbjct: 103 NWKDRTTEQVLDLMLVQDAATAFRRSKSCGEGRACTPSLDFDMLLHKSRNAHHNQNHHRG 162
Query: 171 -------------------FPKIEAIEEGPM---SGKNPETPAEEEKFKC---CMYLPGF 205
F K E+ + + + + E+ FKC C+YLPGF
Sbjct: 163 FSSSNSKSLSHKSSGNNSFFSKTESNKSNRSNSNTANSKSINSFEDGFKCSALCLYLPGF 222
Query: 206 GKAKPVKSTRKEGSEMED--------------------AISSRVSLEKFECGSWASSTLL 245
K KPV+S+RK S +S+R SLE+FECGSW SS ++
Sbjct: 223 SKGKPVRSSRKGDSSFTRTTTMTSSQSMARTASIRDTAVLSARASLERFECGSWTSSAMI 282
Query: 246 HEIEGDTTNSYYDLPMELIKC--SVSDVHAPVTSAFVF------EKELKGVLKNGSSRGS 297
++ D ++DLP ELIK +D PV++AFVF +KE+KGVLK S+
Sbjct: 283 YDDNADLGGHFFDLPSELIKGGPGGNDQDDPVSAAFVFDKEPNLDKEIKGVLKTSGSK-- 340
Query: 298 ARKSDAAPHHVRFXXXXXXXXXXXXXXCNAAHLRKASEDFKAFLEAQST 346
+R+S +P HVRF L +A+EDF +FLEAQ+
Sbjct: 341 SRRSMESPRHVRFSTSSPVSYPTSPTHSITPRLLQATEDFSSFLEAQAV 389
>AT1G30850.1 | Symbols: RSH4 | root hair specific 4 |
chr1:10985116-10986018 FORWARD LENGTH=300
Length = 300
Score = 110 bits (274), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 70/183 (38%), Positives = 95/183 (51%), Gaps = 32/183 (17%)
Query: 192 EEEKFKC---CMYLPGFGKAKPVKSTRKEGSEME-----------DAISSRVSLEKFECG 237
+EE FKC C+ LPGFGK K ++S+ K + ME +S R SLEKFECG
Sbjct: 120 KEEDFKCNAFCLSLPGFGKNKLIRSSSKRQNSMEKKMIRASSFTGSTVSVRASLEKFECG 179
Query: 238 SWASSTLLHEIEGDTTNSYYDLPMELIKCSV------SDVHAPVTSAFVFEKE-----LK 286
SWAS+T L + D ++D P+E+ KC+ DV PVTS F+F++E L+
Sbjct: 180 SWASTTALIQ---DNGRLFFDFPVEMTKCNSRGGNGGRDVQEPVTSGFLFDRETETLALR 236
Query: 287 GVLKNGSSRGSARKSDAAPH-HVRFXXXXXXXXX---XXXXXCNAAHLRKASEDFKAFLE 342
VLK S+R R ++++P VRF C LRKA +DF FL
Sbjct: 237 SVLKTRSTRDHRRSAESSPQRRVRFSTSSSSASVSCPTSPRTCITPRLRKARDDFNTFLT 296
Query: 343 AQS 345
AQ+
Sbjct: 297 AQN 299
>AT2G34910.1 | Symbols: | BEST Arabidopsis thaliana protein match
is: root hair specific 4 (TAIR:AT1G30850.1); Has 43
Blast hits to 43 proteins in 9 species: Archae - 0;
Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 43;
Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
| chr2:14726900-14727766 FORWARD LENGTH=288
Length = 288
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 85/176 (48%), Gaps = 26/176 (14%)
Query: 192 EEEKFKC---CMYLPGFGKAKPVKSTRKEGSEMEDAI----------SSRVSLEKFECGS 238
EEE FKC C+ LPGFGK +PV+S + E S + I S SLEKFECGS
Sbjct: 116 EEENFKCNAFCLSLPGFGK-RPVRSPKSEDSIKKKMIKASSFSNSTVSLSASLEKFECGS 174
Query: 239 WASSTLLHEIEGDTTNSYYDLPMELIKCSVSDVHAPVTSAFVFEKELKGV--------LK 290
WAS+T L G Y DLP+E+IKC DV PV+S F F+KE +
Sbjct: 175 WASTTALTRENGRL---YIDLPVEMIKCGGGDVQEPVSSGFFFDKETGSLALRSVLKKSS 231
Query: 291 NGSSRGSARKSDAAPH-HVRFXXXXXXXXXXXXXXCNAAHLRKASEDFKAFLEAQS 345
+ S R ++ +P VRF C L KA +DF FL AQ+
Sbjct: 232 SLSGRQLRDLAETSPQRRVRFSTTTSDSCPASPRTCITPRLLKARDDFNTFLAAQN 287
>AT5G44660.1 | Symbols: | unknown protein; BEST Arabidopsis
thaliana protein match is: unknown protein
(TAIR:AT4G20190.1); Has 944 Blast hits to 462 proteins
in 141 species: Archae - 2; Bacteria - 370; Metazoa -
161; Fungi - 102; Plants - 64; Viruses - 6; Other
Eukaryotes - 239 (source: NCBI BLink). |
chr5:18015810-18017081 FORWARD LENGTH=423
Length = 423
Score = 89.7 bits (221), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 94/195 (48%), Gaps = 49/195 (25%)
Query: 193 EEKFKC---CMYLPGFGKAKPVKSTRK-----------------------------EGSE 220
E++FKC C++LPGF K KP++S++K E +
Sbjct: 237 EDRFKCNALCLFLPGFSKGKPIRSSQKDDSSSFTRTTTMTRSSSSTITVSRTVSVRESTT 296
Query: 221 MEDAISSRVSLEKFECGSWASSTLLHEIEGDTTNSYYDLPMELIKCSVSDV--HAPVTSA 278
IS+R S+EKF+CGS+ S + E N ++DLP ELIK D PV++A
Sbjct: 297 TTTVISARASMEKFDCGSYTSESCGEE----GGNHFFDLPSELIKSGSGDNDHDEPVSAA 352
Query: 279 FVF-----EKELKGVLKNGSSRGSARKSDAAP--HHVRFXXXXXXXXXXXXXXCNAAHLR 331
FVF EKE+KGVLK S+ RK+ +P VRF + L
Sbjct: 353 FVFDKEPVEKEIKGVLKVSGSKN--RKAMESPSLRQVRFSTSSPVSYPTSPAI--SPRLL 408
Query: 332 KASEDFKAFLEAQST 346
+A+++F AFLEAQ+
Sbjct: 409 EATKNFNAFLEAQAV 423