Miyakogusa Predicted Gene

Lj0g3v0223199.3

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0223199.3 tr|A4RUK5|A4RUK5_OSTLU Predicted protein
OS=Ostreococcus lucimarinus (strain CCE9901)
GN=OSTLU_30653,34.48,2e-18,Pseudouridine synthase,Pseudouridine
synthase, catalytic domain; SUBFAMILY NOT NAMED,NULL; RNA
PSEUD,CUFF.15297.3
         (289 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G21770.1 | Symbols:  | Pseudouridine synthase family protein ...   300   1e-81

>AT4G21770.1 | Symbols:  | Pseudouridine synthase family protein |
           chr4:11564028-11566345 REVERSE LENGTH=472
          Length = 472

 Score =  300 bits (767), Expect = 1e-81,   Method: Compositional matrix adjust.
 Identities = 155/269 (57%), Positives = 195/269 (72%), Gaps = 12/269 (4%)

Query: 3   FSGGCRSFTAP-AVSRALRNS-LTKHL---NKHALXXXXXXXXXXXNAALAGETESSTTD 57
            +GG R+ TAP ++ R L ++ +T  L   NKH+             + L  ++++ TT 
Sbjct: 6   LTGGYRNLTAPVSLLRTLASTRVTTPLFRSNKHSPRFISSPKRFTCLSLLKTDSQNQTTL 65

Query: 58  AGNLXXXXXXXXXXXXXDRLLPCPLHKSPPRIEHLVVSEGGPVL-EYICRSLDLHPLFVE 116
           + +              +RL+PCP +  PPRIEH+VV E   ++ E+I + LDL PL+V 
Sbjct: 66  SSS------SNSGYHEYNRLMPCPAYNLPPRIEHMVVLEDDVLVSEFISKQLDLPPLYVA 119

Query: 117 DLIQFGAVYYALVCPHPPPNATPEQLRIFKEVTEPSVLRKRPSIKGKTFREAQKTFRITH 176
           DLI+FGAV+YALVCP PPP ATPE++ +F+EVT PSVL+KR SIKGKT REAQKTFR+TH
Sbjct: 120 DLIRFGAVHYALVCPKPPPTATPEEIILFEEVTSPSVLKKRSSIKGKTVREAQKTFRVTH 179

Query: 177 ANQFVEPGTYLRVHVHPKRFPRCYEIDWRSRIIAVAESYVVLDKPAGTSVGGTTDNIEES 236
            NQ+ E GTYLRVHVHPKR PRCYEIDW+SRI+AV +SYV+LDKPAGT+VGGTTDNIEES
Sbjct: 180 TNQYAEAGTYLRVHVHPKRSPRCYEIDWKSRIVAVTDSYVILDKPAGTTVGGTTDNIEES 239

Query: 237 CVTFATRALGLTTPLLTTHQIDNCTEGCL 265
           C TFA+RAL L  PL TTHQIDNCTEGC+
Sbjct: 240 CATFASRALDLPEPLKTTHQIDNCTEGCV 268