Miyakogusa Predicted Gene

Lj0g3v0222539.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0222539.1 tr|Q71EW8|Q71EW8_SOYBN Methionine synthase
OS=Glycine max GN=Gma.30744 PE=2 SV=1,95.88,0,UROD/MetE-like,NULL;
Meth_synt_2,Methionine synthase, vitamin-B12 independent;
5-METHYLTETRAHYDROPTE,CUFF.14464.1
         (270 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G17920.2 | Symbols: ATCIMS | Cobalamin-independent synthase f...   530   e-151
AT5G17920.1 | Symbols: ATCIMS, ATMETS, ATMS1 | Cobalamin-indepen...   530   e-151
AT3G03780.3 | Symbols: ATMS2, MS2 | methionine synthase 2 | chr3...   528   e-150
AT3G03780.2 | Symbols: ATMS2, MS2 | methionine synthase 2 | chr3...   528   e-150
AT3G03780.1 | Symbols: ATMS2, MS2 | methionine synthase 2 | chr3...   528   e-150
AT5G20980.2 | Symbols: ATMS3, MS3 | methionine synthase 3 | chr5...   508   e-144
AT5G20980.1 | Symbols: ATMS3, MS3 | methionine synthase 3 | chr5...   508   e-144

>AT5G17920.2 | Symbols: ATCIMS | Cobalamin-independent synthase
           family protein | chr5:5935771-5939195 FORWARD LENGTH=765
          Length = 765

 Score =  530 bits (1364), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 247/270 (91%), Positives = 255/270 (94%)

Query: 1   MVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKPMTVFWSSMAQSMTKRPMK 60
           MVEYFGEQLSGFAFT NGWVQSYGSRCVKPP+IYGDVSRPK MTVFWS+MAQSMT RPMK
Sbjct: 496 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMK 555

Query: 61  GMLTGPVTILNWSFVRNDQPRSETTYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPL 120
           GMLTGPVTILNWSFVRNDQPR ET YQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPL
Sbjct: 556 GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPL 615

Query: 121 RKSEQAHYLDWAVHAFRITNIGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 180
           RKSE A YLDWAVH+FRITN GVQD+TQIHTHMCYS+FNDIIHSIIDMDADVITIENSRS
Sbjct: 616 RKSEHAFYLDWAVHSFRITNCGVQDSTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRS 675

Query: 181 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEEIADRINKMLAVLETNILWVNPDCGL 240
           DEKLLSVFREGVKYGAGIGPGVYDIHSPRIP +EEIADR+NKMLAVLE NILWVNPDCGL
Sbjct: 676 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSSEEIADRVNKMLAVLEQNILWVNPDCGL 735

Query: 241 KTRKYTEVNPALTNMVAATKLIRNQLASGK 270
           KTRKYTEV PAL NMV A KLIR+QLAS K
Sbjct: 736 KTRKYTEVKPALKNMVDAAKLIRSQLASAK 765


>AT5G17920.1 | Symbols: ATCIMS, ATMETS, ATMS1 |
           Cobalamin-independent synthase family protein |
           chr5:5935771-5939195 FORWARD LENGTH=765
          Length = 765

 Score =  530 bits (1364), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 247/270 (91%), Positives = 255/270 (94%)

Query: 1   MVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKPMTVFWSSMAQSMTKRPMK 60
           MVEYFGEQLSGFAFT NGWVQSYGSRCVKPP+IYGDVSRPK MTVFWS+MAQSMT RPMK
Sbjct: 496 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPVIYGDVSRPKAMTVFWSAMAQSMTSRPMK 555

Query: 61  GMLTGPVTILNWSFVRNDQPRSETTYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPL 120
           GMLTGPVTILNWSFVRNDQPR ET YQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPL
Sbjct: 556 GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPL 615

Query: 121 RKSEQAHYLDWAVHAFRITNIGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 180
           RKSE A YLDWAVH+FRITN GVQD+TQIHTHMCYS+FNDIIHSIIDMDADVITIENSRS
Sbjct: 616 RKSEHAFYLDWAVHSFRITNCGVQDSTQIHTHMCYSHFNDIIHSIIDMDADVITIENSRS 675

Query: 181 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEEIADRINKMLAVLETNILWVNPDCGL 240
           DEKLLSVFREGVKYGAGIGPGVYDIHSPRIP +EEIADR+NKMLAVLE NILWVNPDCGL
Sbjct: 676 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSSEEIADRVNKMLAVLEQNILWVNPDCGL 735

Query: 241 KTRKYTEVNPALTNMVAATKLIRNQLASGK 270
           KTRKYTEV PAL NMV A KLIR+QLAS K
Sbjct: 736 KTRKYTEVKPALKNMVDAAKLIRSQLASAK 765


>AT3G03780.3 | Symbols: ATMS2, MS2 | methionine synthase 2 |
           chr3:957602-960740 FORWARD LENGTH=765
          Length = 765

 Score =  528 bits (1360), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 247/270 (91%), Positives = 254/270 (94%)

Query: 1   MVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKPMTVFWSSMAQSMTKRPMK 60
           MVEYFGEQLSGFAFT NGWVQSYGSRCVKPP+IYGDVSRPKPMTVFWSS AQSMTKRPMK
Sbjct: 496 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPVIYGDVSRPKPMTVFWSSTAQSMTKRPMK 555

Query: 61  GMLTGPVTILNWSFVRNDQPRSETTYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPL 120
           GMLTGPVTILNWSFVRNDQPR ET YQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPL
Sbjct: 556 GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPL 615

Query: 121 RKSEQAHYLDWAVHAFRITNIGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 180
           RK+E + YLDWAVH+FRITN GVQD+TQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS
Sbjct: 616 RKAEHSFYLDWAVHSFRITNCGVQDSTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 675

Query: 181 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEEIADRINKMLAVLETNILWVNPDCGL 240
           DEKLLSVFREGVKYGAGIGPGVYDIHSPRIP T+EIADRINKMLAVLE NILWVNPDCGL
Sbjct: 676 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTDEIADRINKMLAVLEQNILWVNPDCGL 735

Query: 241 KTRKYTEVNPALTNMVAATKLIRNQLASGK 270
           KTRKYTEV PAL  MV A KLIR+QL S K
Sbjct: 736 KTRKYTEVKPALKAMVDAAKLIRSQLGSAK 765


>AT3G03780.2 | Symbols: ATMS2, MS2 | methionine synthase 2 |
           chr3:957602-960740 FORWARD LENGTH=765
          Length = 765

 Score =  528 bits (1360), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 247/270 (91%), Positives = 254/270 (94%)

Query: 1   MVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKPMTVFWSSMAQSMTKRPMK 60
           MVEYFGEQLSGFAFT NGWVQSYGSRCVKPP+IYGDVSRPKPMTVFWSS AQSMTKRPMK
Sbjct: 496 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPVIYGDVSRPKPMTVFWSSTAQSMTKRPMK 555

Query: 61  GMLTGPVTILNWSFVRNDQPRSETTYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPL 120
           GMLTGPVTILNWSFVRNDQPR ET YQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPL
Sbjct: 556 GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPL 615

Query: 121 RKSEQAHYLDWAVHAFRITNIGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 180
           RK+E + YLDWAVH+FRITN GVQD+TQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS
Sbjct: 616 RKAEHSFYLDWAVHSFRITNCGVQDSTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 675

Query: 181 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEEIADRINKMLAVLETNILWVNPDCGL 240
           DEKLLSVFREGVKYGAGIGPGVYDIHSPRIP T+EIADRINKMLAVLE NILWVNPDCGL
Sbjct: 676 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTDEIADRINKMLAVLEQNILWVNPDCGL 735

Query: 241 KTRKYTEVNPALTNMVAATKLIRNQLASGK 270
           KTRKYTEV PAL  MV A KLIR+QL S K
Sbjct: 736 KTRKYTEVKPALKAMVDAAKLIRSQLGSAK 765


>AT3G03780.1 | Symbols: ATMS2, MS2 | methionine synthase 2 |
           chr3:957602-960740 FORWARD LENGTH=765
          Length = 765

 Score =  528 bits (1360), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 247/270 (91%), Positives = 254/270 (94%)

Query: 1   MVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKPMTVFWSSMAQSMTKRPMK 60
           MVEYFGEQLSGFAFT NGWVQSYGSRCVKPP+IYGDVSRPKPMTVFWSS AQSMTKRPMK
Sbjct: 496 MVEYFGEQLSGFAFTANGWVQSYGSRCVKPPVIYGDVSRPKPMTVFWSSTAQSMTKRPMK 555

Query: 61  GMLTGPVTILNWSFVRNDQPRSETTYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPL 120
           GMLTGPVTILNWSFVRNDQPR ET YQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPL
Sbjct: 556 GMLTGPVTILNWSFVRNDQPRHETCYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPL 615

Query: 121 RKSEQAHYLDWAVHAFRITNIGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 180
           RK+E + YLDWAVH+FRITN GVQD+TQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS
Sbjct: 616 RKAEHSFYLDWAVHSFRITNCGVQDSTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 675

Query: 181 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEEIADRINKMLAVLETNILWVNPDCGL 240
           DEKLLSVFREGVKYGAGIGPGVYDIHSPRIP T+EIADRINKMLAVLE NILWVNPDCGL
Sbjct: 676 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPSTDEIADRINKMLAVLEQNILWVNPDCGL 735

Query: 241 KTRKYTEVNPALTNMVAATKLIRNQLASGK 270
           KTRKYTEV PAL  MV A KLIR+QL S K
Sbjct: 736 KTRKYTEVKPALKAMVDAAKLIRSQLGSAK 765


>AT5G20980.2 | Symbols: ATMS3, MS3 | methionine synthase 3 |
           chr5:7124397-7128353 REVERSE LENGTH=812
          Length = 812

 Score =  508 bits (1308), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 235/266 (88%), Positives = 249/266 (93%)

Query: 1   MVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKPMTVFWSSMAQSMTKRPMK 60
           MVE+FGEQLSGFAFT NGWVQSYGSRCVKPPIIYGD++RPK MTVFWSSMAQ MT+RPMK
Sbjct: 544 MVEFFGEQLSGFAFTSNGWVQSYGSRCVKPPIIYGDITRPKAMTVFWSSMAQKMTQRPMK 603

Query: 61  GMLTGPVTILNWSFVRNDQPRSETTYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPL 120
           GMLTGPVTILNWSFVRNDQPR ET +QIALAIKDEVEDLEK G+ VIQIDEAALREGLPL
Sbjct: 604 GMLTGPVTILNWSFVRNDQPRHETCFQIALAIKDEVEDLEKAGVTVIQIDEAALREGLPL 663

Query: 121 RKSEQAHYLDWAVHAFRITNIGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 180
           RKSEQ  YLDWAVHAFRITN GVQD+TQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS
Sbjct: 664 RKSEQKFYLDWAVHAFRITNSGVQDSTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 723

Query: 181 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEEIADRINKMLAVLETNILWVNPDCGL 240
           DEKLLSVF EGVKYGAGIGPGVYDIHSPRIP TEEIA+RINKMLAVL++ +LWVNPDCGL
Sbjct: 724 DEKLLSVFHEGVKYGAGIGPGVYDIHSPRIPSTEEIAERINKMLAVLDSKVLWVNPDCGL 783

Query: 241 KTRKYTEVNPALTNMVAATKLIRNQL 266
           KTR Y+EV  AL+NMVAA KLIR+QL
Sbjct: 784 KTRNYSEVKSALSNMVAAAKLIRSQL 809


>AT5G20980.1 | Symbols: ATMS3, MS3 | methionine synthase 3 |
           chr5:7124397-7128353 REVERSE LENGTH=812
          Length = 812

 Score =  508 bits (1308), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 235/266 (88%), Positives = 249/266 (93%)

Query: 1   MVEYFGEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPKPMTVFWSSMAQSMTKRPMK 60
           MVE+FGEQLSGFAFT NGWVQSYGSRCVKPPIIYGD++RPK MTVFWSSMAQ MT+RPMK
Sbjct: 544 MVEFFGEQLSGFAFTSNGWVQSYGSRCVKPPIIYGDITRPKAMTVFWSSMAQKMTQRPMK 603

Query: 61  GMLTGPVTILNWSFVRNDQPRSETTYQIALAIKDEVEDLEKGGIGVIQIDEAALREGLPL 120
           GMLTGPVTILNWSFVRNDQPR ET +QIALAIKDEVEDLEK G+ VIQIDEAALREGLPL
Sbjct: 604 GMLTGPVTILNWSFVRNDQPRHETCFQIALAIKDEVEDLEKAGVTVIQIDEAALREGLPL 663

Query: 121 RKSEQAHYLDWAVHAFRITNIGVQDTTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 180
           RKSEQ  YLDWAVHAFRITN GVQD+TQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS
Sbjct: 664 RKSEQKFYLDWAVHAFRITNSGVQDSTQIHTHMCYSNFNDIIHSIIDMDADVITIENSRS 723

Query: 181 DEKLLSVFREGVKYGAGIGPGVYDIHSPRIPPTEEIADRINKMLAVLETNILWVNPDCGL 240
           DEKLLSVF EGVKYGAGIGPGVYDIHSPRIP TEEIA+RINKMLAVL++ +LWVNPDCGL
Sbjct: 724 DEKLLSVFHEGVKYGAGIGPGVYDIHSPRIPSTEEIAERINKMLAVLDSKVLWVNPDCGL 783

Query: 241 KTRKYTEVNPALTNMVAATKLIRNQL 266
           KTR Y+EV  AL+NMVAA KLIR+QL
Sbjct: 784 KTRNYSEVKSALSNMVAAAKLIRSQL 809