Miyakogusa Predicted Gene
- Lj0g3v0221799.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0221799.1 Non Chatacterized Hit- tr|B9SFZ8|B9SFZ8_RICCO
Exonuclease, putative OS=Ricinus communis GN=RCOM_1153,53.85,2e-19,
,CUFF.14394.1
(95 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G05540.1 | Symbols: SDN2 | small RNA degrading nuclease 2 | c... 71 2e-13
AT5G67240.2 | Symbols: SDN3 | small RNA degrading nuclease 3 | c... 64 2e-11
AT5G67240.1 | Symbols: SDN3 | small RNA degrading nuclease 3 | c... 64 2e-11
AT3G50100.1 | Symbols: SDN1 | small RNA degrading nuclease 1 | c... 51 1e-07
AT3G50090.1 | Symbols: | Exonuclease family protein | chr3:1857... 49 9e-07
>AT5G05540.1 | Symbols: SDN2 | small RNA degrading nuclease 2 |
chr5:1636419-1638759 FORWARD LENGTH=466
Length = 466
Score = 70.9 bits (172), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/92 (41%), Positives = 57/92 (61%), Gaps = 3/92 (3%)
Query: 1 MKLVLARIKHGVDKEFPFTLVQEHVSESDMTKLLLHGIPTSVNIETLHKIVPGDFTIEVK 60
MKLVLA + +G + P + + + E++ +KL LH IP +V E L+ +V D EVK
Sbjct: 295 MKLVLAILDNGAETSVPLS---KEMLEAEKSKLYLHRIPCNVPYEELNGVVSRDIPHEVK 351
Query: 61 PSRKGQRAKYSALATFKNQQEAYEAYENVQGS 92
PS+K R YSA+ FK+ +EA +A+EN+ G
Sbjct: 352 PSKKQDRHYYSAIVVFKSPEEANQAFENIAGD 383
>AT5G67240.2 | Symbols: SDN3 | small RNA degrading nuclease 3 |
chr5:26824454-26828098 REVERSE LENGTH=762
Length = 762
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 27 ESDMTKLLLHGIPTSVNIETLHKIVPGDFTIEVK-PSRKGQRAKYSALATFKNQQEAYEA 85
E+D TKL LH IP V + LH ++ GDFT++VK P RKG Y+A+ F + +EA EA
Sbjct: 445 EADKTKLFLHKIPHDVPSQELHGVLNGDFTLDVKPPKRKG--GYYNAVVDFNSPEEANEA 502
Query: 86 YENVQGSQTK 95
+ENV+G K
Sbjct: 503 FENVEGDVVK 512
Score = 57.8 bits (138), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 27 ESDMTKLLLHGIPTSVNIETLHKIVPGDFTIEVKPSRKGQRAKYSALATFKNQQEAYEAY 86
E+D TKLLLH IP +V + L ++ G FT+EV P ++ R Y+A+ TF + +EA +A+
Sbjct: 584 EADKTKLLLHKIPLNVPSQELKVVITGQFTLEVMPPKRKGRY-YNAVVTFNSPEEANKAF 642
Query: 87 ENVQGSQTK 95
E V+G K
Sbjct: 643 EKVKGEAVK 651
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 20/108 (18%)
Query: 1 MKLVLARIKHGVDKEFPFTLVQ-------------EHVSESDMTKLLLHGIPTSVNIETL 47
MKLVLA ++ G TL+Q E E+ +L LH IP V E L
Sbjct: 273 MKLVLAAVEKGA-----ATLIQPTEEMMVAEKRRQEARQEAGKAQLFLHKIPHDVPSEEL 327
Query: 48 HKIVPGDFTIEVKPSRKGQRAKYSALATFKNQQEAYEAYENVQGSQTK 95
H ++ G+FT+ VKP + G + +A+ F + +EA EA+ENV+G K
Sbjct: 328 HGVLSGNFTLVVKPPKTGGYS--TAVVDFSSPEEANEAFENVEGDVAK 373
>AT5G67240.1 | Symbols: SDN3 | small RNA degrading nuclease 3 |
chr5:26824454-26828098 REVERSE LENGTH=782
Length = 782
Score = 64.3 bits (155), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/70 (48%), Positives = 46/70 (65%), Gaps = 3/70 (4%)
Query: 27 ESDMTKLLLHGIPTSVNIETLHKIVPGDFTIEVK-PSRKGQRAKYSALATFKNQQEAYEA 85
E+D TKL LH IP V + LH ++ GDFT++VK P RKG Y+A+ F + +EA EA
Sbjct: 465 EADKTKLFLHKIPHDVPSQELHGVLNGDFTLDVKPPKRKG--GYYNAVVDFNSPEEANEA 522
Query: 86 YENVQGSQTK 95
+ENV+G K
Sbjct: 523 FENVEGDVVK 532
Score = 58.2 bits (139), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/69 (43%), Positives = 45/69 (65%), Gaps = 1/69 (1%)
Query: 27 ESDMTKLLLHGIPTSVNIETLHKIVPGDFTIEVKPSRKGQRAKYSALATFKNQQEAYEAY 86
E+D TKLLLH IP +V + L ++ G FT+EV P ++ R Y+A+ TF + +EA +A+
Sbjct: 604 EADKTKLLLHKIPLNVPSQELKVVITGQFTLEVMPPKRKGRY-YNAVVTFNSPEEANKAF 662
Query: 87 ENVQGSQTK 95
E V+G K
Sbjct: 663 EKVKGEAVK 671
Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/108 (36%), Positives = 56/108 (51%), Gaps = 20/108 (18%)
Query: 1 MKLVLARIKHGVDKEFPFTLVQ-------------EHVSESDMTKLLLHGIPTSVNIETL 47
MKLVLA ++ G TL+Q E E+ +L LH IP V E L
Sbjct: 293 MKLVLAAVEKGA-----ATLIQPTEEMMVAEKRRQEARQEAGKAQLFLHKIPHDVPSEEL 347
Query: 48 HKIVPGDFTIEVKPSRKGQRAKYSALATFKNQQEAYEAYENVQGSQTK 95
H ++ G+FT+ VKP + G + +A+ F + +EA EA+ENV+G K
Sbjct: 348 HGVLSGNFTLVVKPPKTGGYS--TAVVDFSSPEEANEAFENVEGDVAK 393
>AT3G50100.1 | Symbols: SDN1 | small RNA degrading nuclease 1 |
chr3:18578411-18580594 FORWARD LENGTH=409
Length = 409
Score = 51.2 bits (121), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 1 MKLVLARIKHGVDKEFPFTLVQEHVSESDMTKLLLHGIPTSVNIETLHKIVPGDFTIEVK 60
MKL LA ++ VD + + + E + KL LH IP +V E L +++ G FT++VK
Sbjct: 288 MKLALAVVEKRVDTTIKPS---KEMLEVEKAKLFLHKIPNNVPSEELEQVLSGKFTLDVK 344
Query: 61 PSRKGQRAKYSALATFKNQQEAYEAYENVQG 91
+ K Q Y A A F + ++A +A+E++ G
Sbjct: 345 QA-KTQGRYYCAFALFHSSEDADQAFEHIDG 374
>AT3G50090.1 | Symbols: | Exonuclease family protein |
chr3:18575432-18577336 FORWARD LENGTH=322
Length = 322
Score = 48.5 bits (114), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 27 ESDMTKLLLHGIPTSVNIETLHK-----IVPGDFTIEVKPSRKGQRAKYSALATFKNQQE 81
E++ ++L LH IP ++ E L K P +FTI+VKP+ K Q Y A+ F + E
Sbjct: 230 EAEKSRLFLHRIPHHLSSEELKKDLALKFFPKNFTIDVKPA-KTQGGYYCAVVIFGSSVE 288
Query: 82 AYEAYENVQG 91
A +A+ENV G
Sbjct: 289 ANQAFENVNG 298