Miyakogusa Predicted Gene

Lj0g3v0221779.4
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0221779.4 tr|B9HHB4|B9HHB4_POPTR Predicted protein
OS=Populus trichocarpa GN=POPTRDRAFT_562926 PE=4 SV=1,44.76,1e-18,
,CUFF.14407.4
         (102 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G67240.2 | Symbols: SDN3 | small RNA degrading nuclease 3 | c...   109   3e-25
AT5G67240.1 | Symbols: SDN3 | small RNA degrading nuclease 3 | c...   109   3e-25
AT3G50100.1 | Symbols: SDN1 | small RNA degrading nuclease 1 | c...    81   2e-16
AT5G05540.2 | Symbols: SDN2 | small RNA degrading nuclease 2 | c...    63   5e-11
AT5G05540.1 | Symbols: SDN2 | small RNA degrading nuclease 2 | c...    62   6e-11

>AT5G67240.2 | Symbols: SDN3 | small RNA degrading nuclease 3 |
           chr5:26824454-26828098 REVERSE LENGTH=762
          Length = 762

 Score =  109 bits (273), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 77/104 (74%), Gaps = 2/104 (1%)

Query: 1   MDDKIDAADKKVLVDIVKLSQKRGMKGNLGDWKEFLNSYDKKFGASMSDPAKRTHEVLAA 60
           M+ K+  A+KK+LVD+VKL QKRG++G  G WKEFLN YDKK G+S+SDPA+R+++VL A
Sbjct: 1   MEHKLATAEKKLLVDLVKLVQKRGLEGENGGWKEFLNVYDKKLGSSLSDPARRSNDVLVA 60

Query: 61  FLKTFSMEDDLKFFGNIMRHHSSQYSVEKLKDKSHD--SPEQGL 102
           FL TF  ++DL+    +M+  +++  +EK K ++ D  +PEQ L
Sbjct: 61  FLLTFKKKEDLQLIARVMQCGANRELIEKFKQETPDKETPEQRL 104


>AT5G67240.1 | Symbols: SDN3 | small RNA degrading nuclease 3 |
           chr5:26824454-26828098 REVERSE LENGTH=782
          Length = 782

 Score =  109 bits (273), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 52/104 (50%), Positives = 77/104 (74%), Gaps = 2/104 (1%)

Query: 1   MDDKIDAADKKVLVDIVKLSQKRGMKGNLGDWKEFLNSYDKKFGASMSDPAKRTHEVLAA 60
           M+ K+  A+KK+LVD+VKL QKRG++G  G WKEFLN YDKK G+S+SDPA+R+++VL A
Sbjct: 1   MEHKLATAEKKLLVDLVKLVQKRGLEGENGGWKEFLNVYDKKLGSSLSDPARRSNDVLVA 60

Query: 61  FLKTFSMEDDLKFFGNIMRHHSSQYSVEKLKDKSHD--SPEQGL 102
           FL TF  ++DL+    +M+  +++  +EK K ++ D  +PEQ L
Sbjct: 61  FLLTFKKKEDLQLIARVMQCGANRELIEKFKQETPDKETPEQRL 104


>AT3G50100.1 | Symbols: SDN1 | small RNA degrading nuclease 1 |
           chr3:18578411-18580594 FORWARD LENGTH=409
          Length = 409

 Score = 80.9 bits (198), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 69/104 (66%), Gaps = 7/104 (6%)

Query: 1   MDDKIDAADKKVLVDIVKLSQKRGMKGNLGDWKEFLNSYDKKFGASMSDPAKRTHEVLAA 60
           M+ K+  A+K+VL ++VKL Q R ++G  G+WKEFL+ YDK    S SDP++R+HE L  
Sbjct: 1   MELKLATAEKQVLDELVKLLQSRDLRGENGNWKEFLHVYDKN-ADSPSDPSRRSHEDLVQ 59

Query: 61  FLKTFSMEDDLKFFGNIMRHHSSQYSVEKLKDKSH--DSPEQGL 102
           FL TF  ++DL+    +++ H++   +E LK +S   D+PEQ L
Sbjct: 60  FLTTFKKKEDLQ----LLKCHANHLLIENLKQESQDEDTPEQML 99


>AT5G05540.2 | Symbols: SDN2 | small RNA degrading nuclease 2 |
           chr5:1636419-1638256 FORWARD LENGTH=352
          Length = 352

 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 4/104 (3%)

Query: 1   MDDKIDAADKKVLVDIVKLSQKRGMKGNLGDWKEFLNSYDKKFG-ASMSDPAKRTHEVLA 59
           M+D +  A+  VLV +VK++QK G+KG  G WKEFL+ YDK+ G +S+SDP+KR  + L 
Sbjct: 1   MEDVLATAEGVVLVKLVKVAQKLGLKGENGTWKEFLDFYDKQLGSSSLSDPSKRRKDDLV 60

Query: 60  AFLKTFSMEDDLKFFGNIMRHHSSQYSVEKLKDKSHD-SPEQGL 102
           AFL T   ++DL+     ++  +  +  EK K KS D + EQ L
Sbjct: 61  AFLTTLKKKEDLQLLAKSLKLDNDVF--EKFKKKSLDETAEQRL 102


>AT5G05540.1 | Symbols: SDN2 | small RNA degrading nuclease 2 |
           chr5:1636419-1638759 FORWARD LENGTH=466
          Length = 466

 Score = 62.4 bits (150), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 66/104 (63%), Gaps = 4/104 (3%)

Query: 1   MDDKIDAADKKVLVDIVKLSQKRGMKGNLGDWKEFLNSYDKKFG-ASMSDPAKRTHEVLA 59
           M+D +  A+  VLV +VK++QK G+KG  G WKEFL+ YDK+ G +S+SDP+KR  + L 
Sbjct: 1   MEDVLATAEGVVLVKLVKVAQKLGLKGENGTWKEFLDFYDKQLGSSSLSDPSKRRKDDLV 60

Query: 60  AFLKTFSMEDDLKFFGNIMRHHSSQYSVEKLKDKSHD-SPEQGL 102
           AFL T   ++DL+     ++  +  +  EK K KS D + EQ L
Sbjct: 61  AFLTTLKKKEDLQLLAKSLKLDNDVF--EKFKKKSLDETAEQRL 102