Miyakogusa Predicted Gene
- Lj0g3v0221429.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0221429.1 tr|K1ZDN5|K1ZDN5_9BACT RNA binding S1 protein
OS=uncultured bacterium PE=4 SV=1,32.52,2e-18,Ribosomal protein
S1-like RNA-binding domain,RNA-binding domain, S1; seg,NULL; S1
RNA-BINDING DOMAIN,CUFF.14365.1
(401 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT3G23700.1 | Symbols: | Nucleic acid-binding proteins superfam... 424 e-119
AT5G30510.1 | Symbols: RPS1, ARRPS1 | ribosomal protein S1 | chr... 88 1e-17
AT1G12800.1 | Symbols: | Nucleic acid-binding, OB-fold-like pro... 85 9e-17
AT1G71720.1 | Symbols: | Nucleic acid-binding proteins superfam... 59 7e-09
AT4G29060.1 | Symbols: emb2726 | elongation factor Ts family pro... 55 9e-08
AT4G29060.2 | Symbols: emb2726 | elongation factor Ts family pro... 55 9e-08
AT3G11964.1 | Symbols: | RNA binding;RNA binding | chr3:3793957... 52 1e-06
>AT3G23700.1 | Symbols: | Nucleic acid-binding proteins superfamily
| chr3:8531689-8533742 REVERSE LENGTH=392
Length = 392
Score = 424 bits (1089), Expect = e-119, Method: Compositional matrix adjust.
Identities = 209/303 (68%), Positives = 241/303 (79%)
Query: 99 DPRQARKLSDWKAAKAYKESGLVYSGRVEGFNGGGLLVRFYSILGFLPYPQLSPMHSCKE 158
D A SDWK AKAY +SG + G V+GFNGGGLL+RF+S++GFLPYPQLSP SCKE
Sbjct: 87 DEASAAGPSDWKTAKAYCKSGDTFEGEVQGFNGGGLLIRFHSLVGFLPYPQLSPSRSCKE 146
Query: 159 PEKTIQEIAKGLVGSVMPVKVILADDDKTKLIFSEKEAAYSKFSKQVKVGDIFEAKVGSV 218
P+K+I EIAK LVGS +PVKV+ AD++ KLI SEK A + K+S+ V VGD+F +VGSV
Sbjct: 147 PQKSIHEIAKTLVGSKLPVKVVQADEENRKLILSEKLALWPKYSQNVNVGDVFNGRVGSV 206
Query: 219 EDYGAFVHLRFPDGLYHLTGLIHISEVSWDLVQDVRDFLTDGDEVRVKVINIDSGKSRIT 278
EDYGAF+HLRF DGLYHLTGL+H+SEVSWD VQDVRD L DGDEVRV V NID KSRIT
Sbjct: 207 EDYGAFIHLRFDDGLYHLTGLVHVSEVSWDYVQDVRDVLRDGDEVRVIVTNIDKEKSRIT 266
Query: 279 LSMKQLEEDPLLETLDKVIPQXXXXXXXXXXXXXXXXIEPLPGLESILEERLQEDGIYDA 338
LS+KQLE+DPLLETLDKVI + IEPLPGLE+ILEE L+EDGI
Sbjct: 267 LSIKQLEDDPLLETLDKVILKDSSTGSPSLSSNNGDTIEPLPGLETILEELLKEDGIEAV 326
Query: 339 RISRQGFEKRVVSQDLQLWLSNAPPTNQRFTLLARAGRQVQEIHLTTSLDQEGIKKALQR 398
+I+RQGFEKRVVSQDLQLWLSN PP++ +F LLARAGRQVQEIHLTTSL+Q GIKKALQ
Sbjct: 327 KINRQGFEKRVVSQDLQLWLSNTPPSDGKFVLLARAGRQVQEIHLTTSLEQGGIKKALQH 386
Query: 399 VLE 401
VLE
Sbjct: 387 VLE 389
>AT5G30510.1 | Symbols: RPS1, ARRPS1 | ribosomal protein S1 |
chr5:11619262-11621223 REVERSE LENGTH=416
Length = 416
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 95/180 (52%), Gaps = 18/180 (10%)
Query: 109 WKAAKAYKESGLVYSGRVEGFNGGGLLVRFYSILGFLPYPQLSPMHSCKEPEKTIQEIAK 168
W+ + + ++ +V G N GGL+ + GF+P+ Q+S + +E
Sbjct: 177 WERCRQLQAEDVIVKAKVIGANKGGLVALVEGLRGFVPFSQISSKAAAEE---------- 226
Query: 169 GLVGSVMPVKVILADDDKTKLIFSEKEAAYSKFSKQVKVGDIFEAKVGSVEDYGAFVHLR 228
L+ +P+K + D+++TKL+ S ++A Q+ +G + V S++ YGAF+ +
Sbjct: 227 -LLEKEIPLKFVEVDEEQTKLVLSNRKAVADS-QAQLGIGSVVLGVVQSLKPYGAFIDIG 284
Query: 229 FPDGLYHLTGLIHISEVSWDLVQDVRDFLTDGDEVRVKVINIDSGKSRITLSMKQLEEDP 288
+ GL+H+S++S D V D+ L GD ++V +++ D + R++LS K+LE P
Sbjct: 285 ------GINGLLHVSQISHDRVSDIATVLQPGDTLKVMILSHDRDRGRVSLSTKKLEPTP 338
>AT1G12800.1 | Symbols: | Nucleic acid-binding, OB-fold-like
protein | chr1:4361778-4365189 REVERSE LENGTH=767
Length = 767
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 70/240 (29%), Positives = 111/240 (46%), Gaps = 18/240 (7%)
Query: 164 QEIAKGLVGSVMPVKVILADDDKTKLIFS----EKEAAYSK---FSKQVKVGDIFEAKVG 216
Q+ VG + V V++A+ + KLIFS E E K +++VGD+ + +
Sbjct: 531 QKFLSSFVGQKIKVNVVMANRNSRKLIFSMRPRENEEEVEKKRTLMAKLRVGDVVKCCIK 590
Query: 217 SVEDYGAFVHLRFPDGLYHLTGLIHISEVSWDLVQDVRDFLTDGDEVRVKVINIDSGKSR 276
+ +G F L + L+H SEVSWD D + G V KV +D R
Sbjct: 591 KITYFGIFCELE------GVPALVHQSEVSWDATLDPASYFKIGQIVEAKVHQLDFALER 644
Query: 277 ITLSMKQLEEDPLLETLDKVIPQXXXXXXXXXXXXXXXXIEPLPGLESILEERLQEDGIY 336
I LS+K++ DPL E L+ V+ P +ES+++E +GI
Sbjct: 645 IFLSLKEITPDPLTEALESVVGGDNDQLGGRLQAAELDA--EWPDVESLIKELEMVEGIQ 702
Query: 337 DARISRQGFEKRVVSQDLQLWLSNAPPTNQRFTLLARAGRQVQEIHLTTSLDQEGIKKAL 396
SR F ++ Q+++ AP ++ LLARAG +VQE+ + SL +E +K +
Sbjct: 703 SVSKSR-FFLSPGLAPTFQVYM--APMFENQYKLLARAGNRVQELIVEASLSKEEMKSTI 759
>AT1G71720.1 | Symbols: | Nucleic acid-binding proteins superfamily
| chr1:26983744-26985893 FORWARD LENGTH=500
Length = 500
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 59/210 (28%), Positives = 96/210 (45%), Gaps = 16/210 (7%)
Query: 86 ILRRPSVSDPLQDDPRQARKLSDWKAAKAYKESGLVYSGRVEGFNGGGLLVRFYSILGFL 145
+L R PL R R+++ W + K+ ++ +N GGLL R + F+
Sbjct: 251 VLGRTLSGRPLLSSRRYFRRIA-WHRVRQIKQLNEPIEVKITEWNTGGLLTRIEGLRAFI 309
Query: 146 PYPQLSPMHSCKEPEKTIQEIAKGLVGSVMPVKVILADDDKTKLIFSEKEAAYSKFSKQV 205
P +L + T E+ + VG V++ ++DK LI SEK A+ K +
Sbjct: 310 PKQELV------KKVNTFTELKEN-VGRRFLVQITRLNEDKNDLILSEK-VAWEKL--YL 359
Query: 206 KVGDIFEAKVGSVEDYGAFVHLRFPDGLYHLTGLIHISEVSWDLVQDVRDFLTDGDEVRV 265
+ G + E V + YGA V L G +GL+HIS ++ + V D L + V+V
Sbjct: 360 REGTLLEGTVVKILPYGAQVKL----GDSSRSGLLHISNITRRRIGSVSDVLQVDESVKV 415
Query: 266 KVINIDSGKSRITLSMKQLEEDPLLETLDK 295
V+ +I+LS+ LE +P L D+
Sbjct: 416 LVVK-SLFPDKISLSIADLESEPGLFISDR 444
>AT4G29060.1 | Symbols: emb2726 | elongation factor Ts family
protein | chr4:14317744-14321315 FORWARD LENGTH=953
Length = 953
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 7/82 (8%)
Query: 208 GDIFEAKVGSVEDYGAFVHL-RFPDGLYHLTGLIHISEVSWDLVQDVRDFLTDGDEVRVK 266
G F KV +++ +GAFV F DGL +H+S++S + V+DV +T G EV+V+
Sbjct: 136 GATFTGKVRAIQPFGAFVDFGAFTDGL------VHVSQLSDNFVKDVSSVVTIGQEVKVR 189
Query: 267 VINIDSGKSRITLSMKQLEEDP 288
++ D RI+L+M++ ++ P
Sbjct: 190 LVEADIESKRISLTMRENDDPP 211
>AT4G29060.2 | Symbols: emb2726 | elongation factor Ts family
protein | chr4:14317744-14321315 FORWARD LENGTH=709
Length = 709
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%), Gaps = 7/82 (8%)
Query: 208 GDIFEAKVGSVEDYGAFVHL-RFPDGLYHLTGLIHISEVSWDLVQDVRDFLTDGDEVRVK 266
G F KV +++ +GAFV F DGL +H+S++S + V+DV +T G EV+V+
Sbjct: 136 GATFTGKVRAIQPFGAFVDFGAFTDGL------VHVSQLSDNFVKDVSSVVTIGQEVKVR 189
Query: 267 VINIDSGKSRITLSMKQLEEDP 288
++ D RI+L+M++ ++ P
Sbjct: 190 LVEADIESKRISLTMRENDDPP 211
>AT3G11964.1 | Symbols: | RNA binding;RNA binding |
chr3:3793957-3806626 REVERSE LENGTH=1896
Length = 1896
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 47/80 (58%), Gaps = 4/80 (5%)
Query: 203 KQVKVGDIFEAKVGSVEDYGAFVHLRFPDGLYHLTGLIHISEVSWDLVQDVRDFLTDGDE 262
K++ VGD+ ++ VE +G F+ + + GL HIS++S D +++V+ G+
Sbjct: 1430 KKLHVGDMISGRIRRVEPFGLFIDI----DQTGMVGLCHISQLSDDRMENVQARYKAGES 1485
Query: 263 VRVKVINIDSGKSRITLSMK 282
VR K++ +D K RI+L MK
Sbjct: 1486 VRAKILKLDEEKKRISLGMK 1505