Miyakogusa Predicted Gene
- Lj0g3v0221269.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0221269.1 Non Chatacterized Hit- tr|Q5YJP1|Q5YJP1_HYAOR
Putative uncharacterized protein (Fragment)
OS=Hyacint,40.85,3e-16,seg,NULL,CUFF.14347.1
(439 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT5G08450.3 | Symbols: | FUNCTIONS IN: molecular_function unkno... 211 9e-55
AT5G08450.2 | Symbols: | CONTAINS InterPro DOMAIN/s: Histone de... 211 9e-55
AT5G08450.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Histone de... 211 9e-55
>AT5G08450.3 | Symbols: | FUNCTIONS IN: molecular_function unknown;
INVOLVED IN: biological_process unknown; LOCATED IN:
cellular_component unknown; EXPRESSED IN: 25 plant
structures; EXPRESSED DURING: 15 growth stages; CONTAINS
InterPro DOMAIN/s: Histone deacetylation protein Rxt3
(InterPro:IPR013951); Has 34444 Blast hits to 20801
proteins in 1175 species: Archae - 64; Bacteria - 2390;
Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses -
208; Other Eukaryotes - 10599 (source: NCBI BLink). |
chr5:2727970-2732572 REVERSE LENGTH=918
Length = 918
Score = 211 bits (536), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 157/443 (35%), Positives = 225/443 (50%), Gaps = 60/443 (13%)
Query: 51 VAKAPRNEFRDADRRSPLHSVYRMXXXXXXXXXXXXXPVGPVNRIESRD-SKDSRDLRFE 109
V K R+E RD +RRSPL VYR +E RD +KD R++R E
Sbjct: 104 VVKVARSEPRDGERRSPLPLVYRSPSLPTTVSSSDPHLTHAPVPMEPRDGAKDGREIRVE 163
Query: 110 NRDPKTEKKELHGEARRDTQ---------------------------------------- 129
+R+ +++ +E++GE +R+ Q
Sbjct: 164 SRENRSDGREIYGETKREIQGPKGDRDVKFERSVDDFSGKGNTGSYTRNDGREMYGETKR 223
Query: 130 -TQSAKNEKDVRVEGKGDD----------NKDARHDRDG--HNDSKGDTKTEKDGFNAIS 176
Q K+++D + E GDD +D + DR+ +N+ KG+ K EK+G
Sbjct: 224 EIQGPKSDRDAKFERPGDDFSGKSNAGSYTRDTKFDRENQNYNEQKGEIKMEKEGH---- 279
Query: 177 SHLNWKDSKEYHRGKRYSDAPSGSLDTWHALHGNTQGSLEVG-KESSAAEEKDHVEAHEA 235
+HL WK+ K+YHRGKR ++ + ++D W GN QG EVG K+ SA E H+E E
Sbjct: 280 AHLAWKEQKDYHRGKRVAEGSTANVDPWVVSRGNPQGPTEVGPKDLSAPVEGSHLEGRET 339
Query: 236 VGENKVXXXXXXXXXXXXXXXXXAKHRDWGEREKERSDRKNSTQVSNTSGDCKESAKDDR 295
VGENKV KHR+WG+R+K+R+DR+ S V + + KE +++R
Sbjct: 340 VGENKVDAKNEDRFKEKDKKRKELKHREWGDRDKDRNDRRVSVLVGSVMSEPKEIGREER 399
Query: 296 DVERSEREKKDLPKEKETSKEREKDQMKRESWNATEKEISNNEKEPADGSVKLPEQETVL 355
+ +R ERE+ + K++E +KE++KD +KRE EKEIS NEKE + S K EQE V
Sbjct: 400 ESDRWERERMEQ-KDRERNKEKDKDHIKREPRTGAEKEISQNEKELGEASAKPSEQEYVA 458
Query: 356 PEQKKQKEVDGWKNGXXXXXXXXXXXXXXXXXXXPDKRNRGLDKESDDGCADAEGAIEKE 415
PEQKKQ E D + +KR+R +KES+DGC + EGA E+E
Sbjct: 459 PEQKKQNEPDNCEKDERETKEKRRERDGDSEAERAEKRSRISEKESEDGCLEGEGATERE 518
Query: 416 RDAYNYSGQHRKRIQRSRGSPQV 438
+DA+NY Q RKR R RGSPQ
Sbjct: 519 KDAFNYGVQQRKRALRPRGSPQT 541
>AT5G08450.2 | Symbols: | CONTAINS InterPro DOMAIN/s: Histone
deacetylation protein Rxt3 (InterPro:IPR013951); Has
30201 Blast hits to 17322 proteins in 780 species:
Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
2996 (source: NCBI BLink). | chr5:2727970-2732572
REVERSE LENGTH=918
Length = 918
Score = 211 bits (536), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 157/443 (35%), Positives = 225/443 (50%), Gaps = 60/443 (13%)
Query: 51 VAKAPRNEFRDADRRSPLHSVYRMXXXXXXXXXXXXXPVGPVNRIESRD-SKDSRDLRFE 109
V K R+E RD +RRSPL VYR +E RD +KD R++R E
Sbjct: 104 VVKVARSEPRDGERRSPLPLVYRSPSLPTTVSSSDPHLTHAPVPMEPRDGAKDGREIRVE 163
Query: 110 NRDPKTEKKELHGEARRDTQ---------------------------------------- 129
+R+ +++ +E++GE +R+ Q
Sbjct: 164 SRENRSDGREIYGETKREIQGPKGDRDVKFERSVDDFSGKGNTGSYTRNDGREMYGETKR 223
Query: 130 -TQSAKNEKDVRVEGKGDD----------NKDARHDRDG--HNDSKGDTKTEKDGFNAIS 176
Q K+++D + E GDD +D + DR+ +N+ KG+ K EK+G
Sbjct: 224 EIQGPKSDRDAKFERPGDDFSGKSNAGSYTRDTKFDRENQNYNEQKGEIKMEKEGH---- 279
Query: 177 SHLNWKDSKEYHRGKRYSDAPSGSLDTWHALHGNTQGSLEVG-KESSAAEEKDHVEAHEA 235
+HL WK+ K+YHRGKR ++ + ++D W GN QG EVG K+ SA E H+E E
Sbjct: 280 AHLAWKEQKDYHRGKRVAEGSTANVDPWVVSRGNPQGPTEVGPKDLSAPVEGSHLEGRET 339
Query: 236 VGENKVXXXXXXXXXXXXXXXXXAKHRDWGEREKERSDRKNSTQVSNTSGDCKESAKDDR 295
VGENKV KHR+WG+R+K+R+DR+ S V + + KE +++R
Sbjct: 340 VGENKVDAKNEDRFKEKDKKRKELKHREWGDRDKDRNDRRVSVLVGSVMSEPKEIGREER 399
Query: 296 DVERSEREKKDLPKEKETSKEREKDQMKRESWNATEKEISNNEKEPADGSVKLPEQETVL 355
+ +R ERE+ + K++E +KE++KD +KRE EKEIS NEKE + S K EQE V
Sbjct: 400 ESDRWERERMEQ-KDRERNKEKDKDHIKREPRTGAEKEISQNEKELGEASAKPSEQEYVA 458
Query: 356 PEQKKQKEVDGWKNGXXXXXXXXXXXXXXXXXXXPDKRNRGLDKESDDGCADAEGAIEKE 415
PEQKKQ E D + +KR+R +KES+DGC + EGA E+E
Sbjct: 459 PEQKKQNEPDNCEKDERETKEKRRERDGDSEAERAEKRSRISEKESEDGCLEGEGATERE 518
Query: 416 RDAYNYSGQHRKRIQRSRGSPQV 438
+DA+NY Q RKR R RGSPQ
Sbjct: 519 KDAFNYGVQQRKRALRPRGSPQT 541
>AT5G08450.1 | Symbols: | CONTAINS InterPro DOMAIN/s: Histone
deacetylation protein Rxt3 (InterPro:IPR013951); Has
34444 Blast hits to 20801 proteins in 1175 species:
Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi -
3729; Plants - 1886; Viruses - 208; Other Eukaryotes -
10599 (source: NCBI BLink). | chr5:2727970-2732572
REVERSE LENGTH=918
Length = 918
Score = 211 bits (536), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 157/443 (35%), Positives = 225/443 (50%), Gaps = 60/443 (13%)
Query: 51 VAKAPRNEFRDADRRSPLHSVYRMXXXXXXXXXXXXXPVGPVNRIESRD-SKDSRDLRFE 109
V K R+E RD +RRSPL VYR +E RD +KD R++R E
Sbjct: 104 VVKVARSEPRDGERRSPLPLVYRSPSLPTTVSSSDPHLTHAPVPMEPRDGAKDGREIRVE 163
Query: 110 NRDPKTEKKELHGEARRDTQ---------------------------------------- 129
+R+ +++ +E++GE +R+ Q
Sbjct: 164 SRENRSDGREIYGETKREIQGPKGDRDVKFERSVDDFSGKGNTGSYTRNDGREMYGETKR 223
Query: 130 -TQSAKNEKDVRVEGKGDD----------NKDARHDRDG--HNDSKGDTKTEKDGFNAIS 176
Q K+++D + E GDD +D + DR+ +N+ KG+ K EK+G
Sbjct: 224 EIQGPKSDRDAKFERPGDDFSGKSNAGSYTRDTKFDRENQNYNEQKGEIKMEKEGH---- 279
Query: 177 SHLNWKDSKEYHRGKRYSDAPSGSLDTWHALHGNTQGSLEVG-KESSAAEEKDHVEAHEA 235
+HL WK+ K+YHRGKR ++ + ++D W GN QG EVG K+ SA E H+E E
Sbjct: 280 AHLAWKEQKDYHRGKRVAEGSTANVDPWVVSRGNPQGPTEVGPKDLSAPVEGSHLEGRET 339
Query: 236 VGENKVXXXXXXXXXXXXXXXXXAKHRDWGEREKERSDRKNSTQVSNTSGDCKESAKDDR 295
VGENKV KHR+WG+R+K+R+DR+ S V + + KE +++R
Sbjct: 340 VGENKVDAKNEDRFKEKDKKRKELKHREWGDRDKDRNDRRVSVLVGSVMSEPKEIGREER 399
Query: 296 DVERSEREKKDLPKEKETSKEREKDQMKRESWNATEKEISNNEKEPADGSVKLPEQETVL 355
+ +R ERE+ + K++E +KE++KD +KRE EKEIS NEKE + S K EQE V
Sbjct: 400 ESDRWERERMEQ-KDRERNKEKDKDHIKREPRTGAEKEISQNEKELGEASAKPSEQEYVA 458
Query: 356 PEQKKQKEVDGWKNGXXXXXXXXXXXXXXXXXXXPDKRNRGLDKESDDGCADAEGAIEKE 415
PEQKKQ E D + +KR+R +KES+DGC + EGA E+E
Sbjct: 459 PEQKKQNEPDNCEKDERETKEKRRERDGDSEAERAEKRSRISEKESEDGCLEGEGATERE 518
Query: 416 RDAYNYSGQHRKRIQRSRGSPQV 438
+DA+NY Q RKR R RGSPQ
Sbjct: 519 KDAFNYGVQQRKRALRPRGSPQT 541