Miyakogusa Predicted Gene

Lj0g3v0221259.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0221259.1 Non Chatacterized Hit- tr|Q5YJP1|Q5YJP1_HYAOR
Putative uncharacterized protein (Fragment)
OS=Hyacint,59.72,0.00000000000002,Rxt3,Histone deacetylation protein
Rxt3,CUFF.14345.1
         (180 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G08450.3 | Symbols:  | FUNCTIONS IN: molecular_function unkno...   306   4e-84
AT5G08450.2 | Symbols:  | CONTAINS InterPro DOMAIN/s: Histone de...   306   4e-84
AT5G08450.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Histone de...   306   4e-84

>AT5G08450.3 | Symbols:  | FUNCTIONS IN: molecular_function unknown;
           INVOLVED IN: biological_process unknown; LOCATED IN:
           cellular_component unknown; EXPRESSED IN: 25 plant
           structures; EXPRESSED DURING: 15 growth stages; CONTAINS
           InterPro DOMAIN/s: Histone deacetylation protein Rxt3
           (InterPro:IPR013951); Has 34444 Blast hits to 20801
           proteins in 1175 species: Archae - 64; Bacteria - 2390;
           Metazoa - 15568; Fungi - 3729; Plants - 1886; Viruses -
           208; Other Eukaryotes - 10599 (source: NCBI BLink). |
           chr5:2727970-2732572 REVERSE LENGTH=918
          Length = 918

 Score =  306 bits (785), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 142/180 (78%), Positives = 162/180 (90%), Gaps = 2/180 (1%)

Query: 1   MQELIKLWKEYESSQSQMEKTAESSNNGPTLEIRIPSDYVTATNRQVRGGQLWGTDVYTY 60
           MQELIKLWKEY+ S    +K+ + +NNGPTLE+RIP+++VTATNRQVRGGQLWGTD+YT 
Sbjct: 574 MQELIKLWKEYDLSHP--DKSGDFANNGPTLEVRIPAEHVTATNRQVRGGQLWGTDIYTD 631

Query: 61  DSDLVAVLMHTGYCRPTATPPPAAIQELRATIRVLPPQDCYISTLRNNVRSRAWGAAIGC 120
           DSDLVAVLMHTGYCRPTA+PPP  +QELR TIRVLP QD Y S LRNNVRSRAWGA IGC
Sbjct: 632 DSDLVAVLMHTGYCRPTASPPPPTMQELRTTIRVLPSQDYYTSKLRNNVRSRAWGAGIGC 691

Query: 121 SYRVDRCCIVKKGGGTIDLEPCLTHTSTIEPTLAPVAVERTMTTRAAASNALRQQKFVRE 180
           SYRV+RC I+KKGGGTI+LEP LTH+ST+EPTLAP+AVER+MTTRAAASNALRQQ+FVRE
Sbjct: 692 SYRVERCYILKKGGGTIELEPSLTHSSTVEPTLAPMAVERSMTTRAAASNALRQQRFVRE 751


>AT5G08450.2 | Symbols:  | CONTAINS InterPro DOMAIN/s: Histone
           deacetylation protein Rxt3 (InterPro:IPR013951); Has
           30201 Blast hits to 17322 proteins in 780 species:
           Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi -
           3422; Plants - 5037; Viruses - 0; Other Eukaryotes -
           2996 (source: NCBI BLink). | chr5:2727970-2732572
           REVERSE LENGTH=918
          Length = 918

 Score =  306 bits (785), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 142/180 (78%), Positives = 162/180 (90%), Gaps = 2/180 (1%)

Query: 1   MQELIKLWKEYESSQSQMEKTAESSNNGPTLEIRIPSDYVTATNRQVRGGQLWGTDVYTY 60
           MQELIKLWKEY+ S    +K+ + +NNGPTLE+RIP+++VTATNRQVRGGQLWGTD+YT 
Sbjct: 574 MQELIKLWKEYDLSHP--DKSGDFANNGPTLEVRIPAEHVTATNRQVRGGQLWGTDIYTD 631

Query: 61  DSDLVAVLMHTGYCRPTATPPPAAIQELRATIRVLPPQDCYISTLRNNVRSRAWGAAIGC 120
           DSDLVAVLMHTGYCRPTA+PPP  +QELR TIRVLP QD Y S LRNNVRSRAWGA IGC
Sbjct: 632 DSDLVAVLMHTGYCRPTASPPPPTMQELRTTIRVLPSQDYYTSKLRNNVRSRAWGAGIGC 691

Query: 121 SYRVDRCCIVKKGGGTIDLEPCLTHTSTIEPTLAPVAVERTMTTRAAASNALRQQKFVRE 180
           SYRV+RC I+KKGGGTI+LEP LTH+ST+EPTLAP+AVER+MTTRAAASNALRQQ+FVRE
Sbjct: 692 SYRVERCYILKKGGGTIELEPSLTHSSTVEPTLAPMAVERSMTTRAAASNALRQQRFVRE 751


>AT5G08450.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Histone
           deacetylation protein Rxt3 (InterPro:IPR013951); Has
           34444 Blast hits to 20801 proteins in 1175 species:
           Archae - 64; Bacteria - 2390; Metazoa - 15568; Fungi -
           3729; Plants - 1886; Viruses - 208; Other Eukaryotes -
           10599 (source: NCBI BLink). | chr5:2727970-2732572
           REVERSE LENGTH=918
          Length = 918

 Score =  306 bits (785), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 142/180 (78%), Positives = 162/180 (90%), Gaps = 2/180 (1%)

Query: 1   MQELIKLWKEYESSQSQMEKTAESSNNGPTLEIRIPSDYVTATNRQVRGGQLWGTDVYTY 60
           MQELIKLWKEY+ S    +K+ + +NNGPTLE+RIP+++VTATNRQVRGGQLWGTD+YT 
Sbjct: 574 MQELIKLWKEYDLSHP--DKSGDFANNGPTLEVRIPAEHVTATNRQVRGGQLWGTDIYTD 631

Query: 61  DSDLVAVLMHTGYCRPTATPPPAAIQELRATIRVLPPQDCYISTLRNNVRSRAWGAAIGC 120
           DSDLVAVLMHTGYCRPTA+PPP  +QELR TIRVLP QD Y S LRNNVRSRAWGA IGC
Sbjct: 632 DSDLVAVLMHTGYCRPTASPPPPTMQELRTTIRVLPSQDYYTSKLRNNVRSRAWGAGIGC 691

Query: 121 SYRVDRCCIVKKGGGTIDLEPCLTHTSTIEPTLAPVAVERTMTTRAAASNALRQQKFVRE 180
           SYRV+RC I+KKGGGTI+LEP LTH+ST+EPTLAP+AVER+MTTRAAASNALRQQ+FVRE
Sbjct: 692 SYRVERCYILKKGGGTIELEPSLTHSSTVEPTLAPMAVERSMTTRAAASNALRQQRFVRE 751