Miyakogusa Predicted Gene

Lj0g3v0220649.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0220649.1 Non Chatacterized Hit- tr|Q9SLF0|Q9SLF0_ARATH
Putative retroelement pol polyprotein OS=Arabidopsis
t,50,0.005,GAG-POL-RELATED RETROTRANSPOSON,NULL;
UBN2_3,NULL,CUFF.14288.1
         (292 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21280.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Retrotrans...   124   7e-29

>AT1G21280.1 | Symbols:  | CONTAINS InterPro DOMAIN/s:
           Retrotransposon gag protein (InterPro:IPR005162); Has
           707 Blast hits to 705 proteins in 25 species: Archae -
           0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:7447690-7448403 REVERSE LENGTH=237
          Length = 237

 Score =  124 bits (311), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 70/218 (32%), Positives = 118/218 (54%), Gaps = 5/218 (2%)

Query: 21  SPYDLNSN-DNPGSVIAQVQLKGE-NYDEWARAMKRSLRARRKWGFVDGTITEPKEGSPP 78
           SPY L  +  +P     Q   K E NY  W    +  LR  +K+GF+DGT+ +P   SP 
Sbjct: 16  SPYYLPPDIHHPSDFSIQKLSKDEDNYVAWKIRFRSFLRVTKKFGFIDGTLPKPDPFSP- 74

Query: 79  LIWRTGGQFKPCWVSWILNTVEPTLRTTLSYLETAKEIWEDIKERFSVVNGPRIQQLKSE 138
            +++   Q     + W++N++   L  ++ Y ETA ++WED++  F      +I QL+  
Sbjct: 75  -LYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMWEDLRRVFVPCVDLKIYQLRRR 133

Query: 139 LAQCKQGNLSIVAYYGKLKALWDELANHEPALTCTCKGCKCGLAAKIEKRKEEEQGHMFL 198
           LA  +QG  S+  Y+GKL  +W EL+ + P   C C GC C    + E+ +E+EQ + FL
Sbjct: 134 LATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCGGCNCECTKRAEEAREKEQRYEFL 193

Query: 199 MGLD-DGLYGTIRSNVLATDPLPSLNKMYSILVQEESV 235
           MGL  +  +  + + ++   P PSL++ ++++   ES+
Sbjct: 194 MGLKLNQGFEAVTTKIMFQKPPPSLHEAFAMVKDAESM 231