Miyakogusa Predicted Gene

Lj0g3v0219899.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0219899.1 Non Chatacterized Hit- tr|D7SKB9|D7SKB9_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,42.42,4e-18,seg,NULL,CUFF.14223.1
         (186 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G29180.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecul...    56   1e-08

>AT2G29180.1 | Symbols:  | unknown protein; FUNCTIONS IN:
           molecular_function unknown; INVOLVED IN:
           biological_process unknown; LOCATED IN: chloroplast
           thylakoid membrane; EXPRESSED IN: 23 plant structures;
           EXPRESSED DURING: 13 growth stages; Has 34 Blast hits to
           33 proteins in 16 species: Archae - 0; Bacteria - 0;
           Metazoa - 0; Fungi - 0; Plants - 33; Viruses - 0; Other
           Eukaryotes - 1 (source: NCBI BLink). |
           chr2:12543081-12543702 FORWARD LENGTH=169
          Length = 169

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 29/71 (40%), Positives = 40/71 (56%), Gaps = 1/71 (1%)

Query: 111 SVFISALFFVAFIGLSVITFGVVYLGVKDFL-QXXXXXXXXXXXXXXXXXXXXXXVVRAR 169
           ++ I  L FVAF+ L+V+T GVVY+GV +FL +                       +RAR
Sbjct: 90  ALIIQVLLFVAFLALTVLTIGVVYIGVTEFLGKREREKFEKDEAAKKSKKGGKKKAMRAR 149

Query: 170 AGPKGFGQKID 180
           AGP+GFGQKI+
Sbjct: 150 AGPRGFGQKIE 160