Miyakogusa Predicted Gene

Lj0g3v0219829.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0219829.1 tr|D7L8S1|D7L8S1_ARALL Peptidoglycan-binding LysM
domain-containing protein OS=Arabidopsis lyrata su,36.27,2e-18,no
description,NULL; LysM domain,NULL; Lysin motif,Peptidoglycan-binding
Lysin subgroup; seg,NULL; L,CUFF.14224.1
         (289 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21880.2 | Symbols: LYM1 | lysm domain GPI-anchored protein 1...   305   3e-83
AT1G77630.1 | Symbols:  | Peptidoglycan-binding LysM domain-cont...   281   3e-76
AT1G21880.1 | Symbols: LYM1 | lysm domain GPI-anchored protein 1...   266   2e-71
AT2G17120.1 | Symbols: LYM2 | lysm domain GPI-anchored protein 2...    83   2e-16

>AT1G21880.2 | Symbols: LYM1 | lysm domain GPI-anchored protein 1
           precursor | chr1:7680689-7682526 FORWARD LENGTH=416
          Length = 416

 Score =  305 bits (781), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 143/207 (69%), Positives = 172/207 (83%)

Query: 9   SXTDPSVLDVGQSLVVPLPCTCFNGSDNSLPAIYLSYVVQPVDSLAAIAARYLTTLTDLM 68
           S  DPS+LDVG SLV+PLPC CFNG+DNSLPA+YLSYVV+ +D+L  IA RY TT+TDLM
Sbjct: 142 SVNDPSLLDVGTSLVIPLPCACFNGTDNSLPAVYLSYVVKEIDTLVGIARRYSTTITDLM 201

Query: 69  NVNAMGSTAISDGDILAVPIPACASNFPKSASDFGLLVPNGSYAITAGHCVQCSCGPRNL 128
           NVNAMG+  +S GDILAVP+ ACAS FP+ ASDFGL+VPNGSYA+ AGHCVQCSC   + 
Sbjct: 202 NVNAMGAPDVSSGDILAVPLSACASKFPRYASDFGLIVPNGSYALAAGHCVQCSCALGSR 261

Query: 129 NLYCMPTSLSASCSSMQCKNSNLMLGNVTAQQSSAGCNVSSCSYDGLVNGTIATTLSASL 188
           NLYC P SL+ SCSSMQC+NSNLMLGN+T QQ+SAGCNV++C Y+G+ NGTI T L+ SL
Sbjct: 262 NLYCEPASLAVSCSSMQCRNSNLMLGNITVQQTSAGCNVTTCDYNGIANGTILTMLTRSL 321

Query: 189 QPRCPGLQEFPPLVAPPTSVEKDPTFA 215
           QPRCPG Q+F PL+APP +V +D  +A
Sbjct: 322 QPRCPGPQQFAPLLAPPDTVPRDVMYA 348


>AT1G77630.1 | Symbols:  | Peptidoglycan-binding LysM
           domain-containing protein | chr1:29173726-29175387
           FORWARD LENGTH=423
          Length = 423

 Score =  281 bits (720), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 132/203 (65%), Positives = 169/203 (83%)

Query: 9   SXTDPSVLDVGQSLVVPLPCTCFNGSDNSLPAIYLSYVVQPVDSLAAIAARYLTTLTDLM 68
           S TD SVLDVG  LV+PLPC CFNG+D SLPA+YLSYVV+ +D++A IA R+ T++TDL 
Sbjct: 139 SETDLSVLDVGTKLVIPLPCACFNGTDESLPALYLSYVVRGIDTMAGIAKRFSTSVTDLT 198

Query: 69  NVNAMGSTAISDGDILAVPIPACASNFPKSASDFGLLVPNGSYAITAGHCVQCSCGPRNL 128
           NVNAMG+  I+ GDILAVP+ AC+SNFPK A+D+GL++PNGSYA+TAGHCVQCSC   + 
Sbjct: 199 NVNAMGAPDINPGDILAVPLLACSSNFPKYATDYGLIIPNGSYALTAGHCVQCSCVLGSR 258

Query: 129 NLYCMPTSLSASCSSMQCKNSNLMLGNVTAQQSSAGCNVSSCSYDGLVNGTIATTLSASL 188
           ++YC P S+S SCSSM+C+NSN MLGN+T+QQSS+GC +++CSY+G  +GTI TTLS SL
Sbjct: 259 SMYCEPASISVSCSSMRCRNSNFMLGNITSQQSSSGCKLTTCSYNGFASGTILTTLSMSL 318

Query: 189 QPRCPGLQEFPPLVAPPTSVEKD 211
           QPRCPG Q+  PL+APP +V K+
Sbjct: 319 QPRCPGPQQLAPLIAPPDNVPKE 341


>AT1G21880.1 | Symbols: LYM1 | lysm domain GPI-anchored protein 1
           precursor | chr1:7680689-7682048 FORWARD LENGTH=316
          Length = 316

 Score =  266 bits (679), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 124/174 (71%), Positives = 147/174 (84%)

Query: 9   SXTDPSVLDVGQSLVVPLPCTCFNGSDNSLPAIYLSYVVQPVDSLAAIAARYLTTLTDLM 68
           S  DPS+LDVG SLV+PLPC CFNG+DNSLPA+YLSYVV+ +D+L  IA RY TT+TDLM
Sbjct: 142 SVNDPSLLDVGTSLVIPLPCACFNGTDNSLPAVYLSYVVKEIDTLVGIARRYSTTITDLM 201

Query: 69  NVNAMGSTAISDGDILAVPIPACASNFPKSASDFGLLVPNGSYAITAGHCVQCSCGPRNL 128
           NVNAMG+  +S GDILAVP+ ACAS FP+ ASDFGL+VPNGSYA+ AGHCVQCSC   + 
Sbjct: 202 NVNAMGAPDVSSGDILAVPLSACASKFPRYASDFGLIVPNGSYALAAGHCVQCSCALGSR 261

Query: 129 NLYCMPTSLSASCSSMQCKNSNLMLGNVTAQQSSAGCNVSSCSYDGLVNGTIAT 182
           NLYC P SL+ SCSSMQC+NSNLMLGN+T QQ+SAGCNV++C Y+G+ NGTI T
Sbjct: 262 NLYCEPASLAVSCSSMQCRNSNLMLGNITVQQTSAGCNVTTCDYNGIANGTILT 315


>AT2G17120.1 | Symbols: LYM2 | lysm domain GPI-anchored protein 2
           precursor | chr2:7459156-7460648 FORWARD LENGTH=350
          Length = 350

 Score = 83.2 bits (204), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 69/195 (35%), Positives = 96/195 (49%), Gaps = 33/195 (16%)

Query: 12  DPSVLDVGQSLVVPLPCTC--FNGSDNSLPAIYLSYVVQPVDSLAAIAARYLTTLTDLMN 69
           DP+ +++GQ   +PLPC+C   NG D     ++ ++VV+   SL  IAA++ T  T L  
Sbjct: 143 DPNKIEIGQKFWIPLPCSCDKLNGED----VVHYAHVVKLGSSLGEIAAQFGTDNTTLAQ 198

Query: 70  VNAMGSTAISDGDILA-----VPIPACASNFPKSASDFGLLVPNGSYAITAGHCVQCSCG 124
           +N +    I D  +LA     VP+ AC+S+  K + D  LL+ N SY  TA +CV+C+C 
Sbjct: 199 LNGI----IGDSQLLADKPLDVPLKACSSSVRKDSLDAPLLLSNNSYVFTANNCVKCTCD 254

Query: 125 P-RNLNLYCMPTSLSASCSSMQCKNSNLMLGNVTAQQSSAGCNVS-----SCSYDGLVNG 178
             +N  L C         SS + K SN       +Q   A  N S      C Y G  N 
Sbjct: 255 ALKNWTLSCQ--------SSSEIKPSNWQTCPPFSQCDGALLNASCRQPRDCVYAGYSNQ 306

Query: 179 TIATTLSASLQPRCP 193
           TI TT S    P CP
Sbjct: 307 TIFTTAS----PACP 317