Miyakogusa Predicted Gene

Lj0g3v0217619.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0217619.1 tr|Q3LT95|Q3LT95_VIBHA 50S ribosomal protein L27
OS=Vibrio harveyi GN=rpmA PE=3
SV=1,73.44,2e-19,Ribosomal_L27,Ribosomal protein L27;
RIBOSOMAL_L27,Ribosomal protein L27, conserved site; RIBOSOMAL
,CUFF.14056.1
         (140 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G15220.1 | Symbols:  | Ribosomal protein L27 family protein |...   155   8e-39
AT2G16930.3 | Symbols:  | Ribosomal protein L27 family protein |...   153   4e-38
AT2G16930.1 | Symbols:  | Ribosomal protein L27 family protein |...   153   4e-38
AT2G16930.2 | Symbols:  | Ribosomal protein L27 family protein |...   153   4e-38
AT5G40950.1 | Symbols: RPL27 | ribosomal protein large subunit 2...    83   5e-17

>AT5G15220.1 | Symbols:  | Ribosomal protein L27 family protein |
           chr5:4941466-4942133 REVERSE LENGTH=154
          Length = 154

 Score =  155 bits (392), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 76/107 (71%), Positives = 87/107 (81%), Gaps = 2/107 (1%)

Query: 36  MNFGASLCRRLSIKELVTNVPVYRSTGDVSGEGLS--MVFSRWASKKTAGSTKNGRDSKP 93
           +N  AS+CRR+S++EL+T VP Y  +    G      +VF RWA+KKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYSGSSISDGSSSGLSLVFKRWATKKTAGSTKNGRDSNP 63

Query: 94  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKDHTLFALKQG 140
           K LGVKKFGGE VIPGNIIVRQRGTRFHPG+YVGIGKDHTLFALK+G
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG 110


>AT2G16930.3 | Symbols:  | Ribosomal protein L27 family protein |
           chr2:7341492-7342118 FORWARD LENGTH=154
          Length = 154

 Score =  153 bits (386), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 80/107 (74%), Positives = 90/107 (84%), Gaps = 2/107 (1%)

Query: 36  MNFGASLCRRLSIKELVTNVPVY--RSTGDVSGEGLSMVFSRWASKKTAGSTKNGRDSKP 93
           +N  AS+CRR+S++EL+T VP Y   S  D S  GLS+V  RWA+KKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 94  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKDHTLFALKQG 140
           K LGVKKFGGE VIPGNIIVRQRGTRFHPG+YVGIGKDHTLFALK+G
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG 110


>AT2G16930.1 | Symbols:  | Ribosomal protein L27 family protein |
           chr2:7341492-7342118 FORWARD LENGTH=154
          Length = 154

 Score =  153 bits (386), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 80/107 (74%), Positives = 90/107 (84%), Gaps = 2/107 (1%)

Query: 36  MNFGASLCRRLSIKELVTNVPVY--RSTGDVSGEGLSMVFSRWASKKTAGSTKNGRDSKP 93
           +N  AS+CRR+S++EL+T VP Y   S  D S  GLS+V  RWA+KKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 94  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKDHTLFALKQG 140
           K LGVKKFGGE VIPGNIIVRQRGTRFHPG+YVGIGKDHTLFALK+G
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG 110


>AT2G16930.2 | Symbols:  | Ribosomal protein L27 family protein |
           chr2:7341492-7342118 FORWARD LENGTH=154
          Length = 154

 Score =  153 bits (386), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 80/107 (74%), Positives = 90/107 (84%), Gaps = 2/107 (1%)

Query: 36  MNFGASLCRRLSIKELVTNVPVY--RSTGDVSGEGLSMVFSRWASKKTAGSTKNGRDSKP 93
           +N  AS+CRR+S++EL+T VP Y   S  D S  GLS+V  RWA+KKTAGSTKNGRDS P
Sbjct: 4   LNSAASICRRVSLRELITEVPAYTGSSISDGSSSGLSLVLKRWATKKTAGSTKNGRDSNP 63

Query: 94  KNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKDHTLFALKQG 140
           K LGVKKFGGE VIPGNIIVRQRGTRFHPG+YVGIGKDHTLFALK+G
Sbjct: 64  KFLGVKKFGGESVIPGNIIVRQRGTRFHPGDYVGIGKDHTLFALKEG 110


>AT5G40950.1 | Symbols: RPL27 | ribosomal protein large subunit 27 |
           chr5:16410866-16411845 FORWARD LENGTH=198
          Length = 198

 Score = 83.2 bits (204), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 42/64 (65%), Positives = 48/64 (75%)

Query: 77  ASKKTAGSTKNGRDSKPKNLGVKKFGGERVIPGNIIVRQRGTRFHPGNYVGIGKDHTLFA 136
           A KK AGSTKNGRDS  + LGVK +G +   PG IIVRQRGT+FH G  VGIGKDHT+F+
Sbjct: 59  AHKKGAGSTKNGRDSPGQRLGVKIYGDQVAKPGAIIVRQRGTKFHAGKNVGIGKDHTIFS 118

Query: 137 LKQG 140
           L  G
Sbjct: 119 LIDG 122