Miyakogusa Predicted Gene

Lj0g3v0217509.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0217509.1 tr|C1E946|C1E946_MICSR Predicted protein
OS=Micromonas sp. (strain RCC299 / NOUM17) GN=MICPUN_59600
,31.08,2e-17,no description,Tetratricopeptide-like helical;
SHNi-TPR,Tetratricopeptide, SHNi-TPR domain; HISTONE
,NODE_33790_length_1820_cov_97.925278.path2.1
         (212 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G37210.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   103   6e-23
AT4G37210.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like su...   103   6e-23

>AT4G37210.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:17512376-17514421 FORWARD
           LENGTH=492
          Length = 492

 Score =  103 bits (258), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 49/83 (59%), Positives = 63/83 (75%)

Query: 2   DKGTKAMKEDDFGEAAENFSRALEIRVANYGELAPECVNTYYKYGCALLYKAQEEADPLG 61
           +KG+  +KE+DF EA + FSRALEIRVA+YGEL  EC+N YY+YG ALL KAQ EADPLG
Sbjct: 85  EKGSVFLKENDFAEAVDCFSRALEIRVAHYGELDAECINAYYRYGLALLAKAQAEADPLG 144

Query: 62  DVPKKQEGSQHGSSKDESVKSTI 84
           ++PKK+   Q  SS  ES+  ++
Sbjct: 145 NMPKKEGEVQQESSNGESLAPSV 167



 Score = 98.6 bits (244), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 47/68 (69%), Positives = 55/68 (80%)

Query: 145 AWKMLDIARAIVEKQCVNTIEHVDILSTLAEISLEREEFENSLSDYQKALSILEQLVEPD 204
           AWKMLDIAR I +KQ   T+E VDIL +LAE+SLERE+ E+SLSDY+ ALSILE+LVEPD
Sbjct: 218 AWKMLDIARVITDKQSTETMEKVDILCSLAEVSLEREDIESSLSDYKNALSILERLVEPD 277

Query: 205 DRYIANLN 212
            R  A LN
Sbjct: 278 SRRTAELN 285


>AT4G37210.2 | Symbols:  | Tetratricopeptide repeat (TPR)-like
           superfamily protein | chr4:17512376-17514072 FORWARD
           LENGTH=377
          Length = 377

 Score =  103 bits (258), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 49/83 (59%), Positives = 63/83 (75%)

Query: 2   DKGTKAMKEDDFGEAAENFSRALEIRVANYGELAPECVNTYYKYGCALLYKAQEEADPLG 61
           +KG+  +KE+DF EA + FSRALEIRVA+YGEL  EC+N YY+YG ALL KAQ EADPLG
Sbjct: 85  EKGSVFLKENDFAEAVDCFSRALEIRVAHYGELDAECINAYYRYGLALLAKAQAEADPLG 144

Query: 62  DVPKKQEGSQHGSSKDESVKSTI 84
           ++PKK+   Q  SS  ES+  ++
Sbjct: 145 NMPKKEGEVQQESSNGESLAPSV 167



 Score = 97.8 bits (242), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 47/68 (69%), Positives = 55/68 (80%)

Query: 145 AWKMLDIARAIVEKQCVNTIEHVDILSTLAEISLEREEFENSLSDYQKALSILEQLVEPD 204
           AWKMLDIAR I +KQ   T+E VDIL +LAE+SLERE+ E+SLSDY+ ALSILE+LVEPD
Sbjct: 218 AWKMLDIARVITDKQSTETMEKVDILCSLAEVSLEREDIESSLSDYKNALSILERLVEPD 277

Query: 205 DRYIANLN 212
            R  A LN
Sbjct: 278 SRRTAELN 285