Miyakogusa Predicted Gene

Lj0g3v0216769.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0216769.1 Non Chatacterized Hit- tr|I3S6L3|I3S6L3_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2 SV=1,98.7,0,Cysteine
proteinases,NULL; UBCTHYDRLASE,Peptidase C12, ubiquitin
carboxyl-terminal hydrolase 1; no d,CUFF.14004.1
         (231 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G17510.1 | Symbols: UCH3 | ubiquitin C-terminal hydrolase 3 |...   352   2e-97
AT1G65650.1 | Symbols: UCH2 | Peptidase C12, ubiquitin carboxyl-...    79   2e-15
AT5G16310.1 | Symbols: UCH1 | Peptidase C12, ubiquitin carboxyl-...    78   6e-15

>AT4G17510.1 | Symbols: UCH3 | ubiquitin C-terminal hydrolase 3 |
           chr4:9767114-9768648 REVERSE LENGTH=234
          Length = 234

 Score =  352 bits (902), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 162/228 (71%), Positives = 197/228 (86%), Gaps = 2/228 (0%)

Query: 4   TTSKKRWLPLEANPDVMNQFLRGLGLPEDQAECYDVYGLDEELLEMVPKPVLAVLFLYPL 63
           ++S KRWLPLE+NPDVMNQ+L GLGL  D+AEC DVYGLD+ELLEMVPKPVLAVLFLYP+
Sbjct: 7   SSSSKRWLPLESNPDVMNQYLWGLGLAPDEAECNDVYGLDDELLEMVPKPVLAVLFLYPI 66

Query: 64  TAKSEEERLRQANEKQE--YSNKVYFMKQTVGNACGTIGLLHALGNITSEVKFVEGSFFD 121
           T KSEEER+ Q  E +E  +S+KVYFMKQTVGNACGTIGLLHA+GNITSE+K  +GSF D
Sbjct: 67  TKKSEEERIEQDKEIKEKVHSDKVYFMKQTVGNACGTIGLLHAIGNITSEIKLSDGSFLD 126

Query: 122 KFFKSTASLDPSQRAVFLENDREMEVAHSVPATAGDTEASDNVDTHFICFACIDGELYEL 181
           +FFKSTA++ P +RA FLEND ++E AHSV   AGDT AS++ DTHFIC AC++GELYEL
Sbjct: 127 RFFKSTANMTPMERAKFLENDSQIEDAHSVAVIAGDTPASEDADTHFICLACVEGELYEL 186

Query: 182 DGRKSAPISHGPSSPSTLLRDASKAIQSMIKENPNSLNFNVIALSKKS 229
           DGRK+ PISHG SSP+TLL+DA+K I+ MI++NP SLNFN+IA+SK++
Sbjct: 187 DGRKAGPISHGASSPATLLKDATKVIKKMIEKNPGSLNFNLIAISKRT 234


>AT1G65650.1 | Symbols: UCH2 | Peptidase C12, ubiquitin
           carboxyl-terminal hydrolase 1 | chr1:24415172-24417466
           REVERSE LENGTH=330
          Length = 330

 Score = 79.3 bits (194), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 109/235 (46%), Gaps = 24/235 (10%)

Query: 10  WLPLEANPDVMNQFLRGLGLPEDQAECYDVYGLDEELLEMVPKPVLAVLFLYPLTAKSEE 69
           W  +E++P V  + ++ + +   Q E  ++Y LD + L  + +PV  ++FL+   A  ++
Sbjct: 3   WCTIESDPGVFTELIQQMQVKGVQVE--ELYSLDSDSLNNL-RPVYGLIFLFKWQAGEKD 59

Query: 70  ERLRQANEKQEYSNKVYFMKQTVGNACGTIGLLHALGNITSEVKFVEGSFFDKFFKSTAS 129
           ER       Q+  + ++F  Q + NAC T  +L  L N + EV    G       + T +
Sbjct: 60  ER----PTIQDQVSNLFFANQVINNACATQAILAILLN-SPEVDI--GPELSALKEFTKN 112

Query: 130 LDPSQRAVFLENDREMEVAHS--------VPATAGDTEASDNVDTHFICFACIDGELYEL 181
                + + + N   +  AH+        VP         D+V  HFI +  +DG LYEL
Sbjct: 113 FPSDLKGLAINNSDSIRAAHNSFARPEPFVPEEQKAATKDDDV-YHFISYIPVDGVLYEL 171

Query: 182 DGRKSAPISHGPSSPSTLLRDASKAIQSMIKE-----NPNSLNFNVIALSKKSSD 231
           DG K  PIS GP        +  + +Q +I+E     + + + FN++A+ K   D
Sbjct: 172 DGLKEGPISLGPCPGDQTGIEWLQMVQPVIQERIERYSQSEIRFNLLAVIKNRKD 226


>AT5G16310.1 | Symbols: UCH1 | Peptidase C12, ubiquitin
           carboxyl-terminal hydrolase 1 | chr5:5342579-5344153
           REVERSE LENGTH=334
          Length = 334

 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 63/240 (26%), Positives = 114/240 (47%), Gaps = 28/240 (11%)

Query: 10  WLPLEANPDVMNQFLRGLGLPEDQAECYDVYGLDEELLEMVPKPVLAVLFLYPLTAKSEE 69
           WLP+E++P +  + ++ + +   Q E  ++Y LD   L+ + +PV  ++ LY    + +E
Sbjct: 3   WLPVESDPGIFTEIIQQMQVKGVQVE--ELYSLDFNSLDEI-RPVYGLILLYKWRPEEKE 59

Query: 70  ERLRQANEKQEYSNKVYFMKQTVGNACGTIGLLHALGNITSEVKFVEGSFFDKFFKSTAS 129
            R+       E +   +F  Q + NAC T  +L  L N +S +    GS   +  +    
Sbjct: 60  NRVVIT----EPNPNFFFASQIINNACATQAILSVLMN-SSSIDI--GSELSELKQFAKE 112

Query: 130 LDPSQRAVFLENDREMEVAHSV-----PATAGDTE---ASDNVDT-----HFICFACIDG 176
             P  + + + N+  +  AH+      P++  + E   A+ N+D      H+I +  +DG
Sbjct: 113 FPPELKGLAINNNEAIRAAHNTFARPDPSSIMEDEELAAAKNLDEDDDVYHYISYLPVDG 172

Query: 177 ELYELDGRKSAPISHGP--SSPSTL--LRDASKAIQSMI-KENPNSLNFNVIALSKKSSD 231
            LYELDG K  PIS G     P  +  LR     +Q  I + + N + F+++A+ K   +
Sbjct: 173 ILYELDGLKEGPISLGQCLGEPEGIEWLRMVQPVVQEQIDRYSQNEIRFSLLAVVKNRKE 232