Miyakogusa Predicted Gene

Lj0g3v0216559.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0216559.1 Non Chatacterized Hit- tr|I1HJT8|I1HJT8_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,37.11,2e-19,SNF2_N,SNF2-related; P-loop containing nucleoside
triphosphate hydrolases,NULL; ATP BINDING / DNA BI,CUFF.13976.1
         (183 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containin...   259   1e-69
AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 | chr2:91...   196   7e-51
AT3G32330.1 | Symbols:  | DNA repair protein-related | chr3:1327...   127   5e-30
AT3G42670.1 | Symbols: CHR38, CLSY | chromatin remodeling 38 | c...    90   1e-18
AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 | chr3:88...    89   2e-18
AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 | chr1:16...    86   1e-17
AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 | chr5:68...    86   2e-17
AT3G31900.1 | Symbols:  | ATP-dependent helicase family protein ...    77   7e-15
AT3G32280.1 | Symbols:  | ATP-dependent helicase family protein ...    72   3e-13
AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORW...    50   8e-07
AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic ac...    49   2e-06
AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA ...    49   2e-06
AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 | chr5:25...    48   4e-06

>AT2G16390.1 | Symbols: DRD1, CHR35, DMS1 | SNF2 domain-containing
           protein / helicase domain-containing protein |
           chr2:7097638-7101182 FORWARD LENGTH=888
          Length = 888

 Score =  259 bits (661), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 130/190 (68%), Positives = 155/190 (81%), Gaps = 11/190 (5%)

Query: 5   SISCQDILLKVPSILILDEGHNPRNENTNMVHSLAKVKTQRKVVLSGTLYQNHVKEVFNI 64
           S+SCQ+ILLKVPSILILDEGH PRNE+TN++ SLA+V+T RKVVLSGTLYQNHVKEVFNI
Sbjct: 475 SLSCQEILLKVPSILILDEGHTPRNEDTNLLQSLAQVQTPRKVVLSGTLYQNHVKEVFNI 534

Query: 65  LNLVRPKFLKMETSRPIVKRI--HSRVHIPGKKT---------FFDLVEDTLQKDPDFKR 113
           LNLVRPKFLK++TS+  VKRI  ++   + G+ T         F + VE TLQK  DF  
Sbjct: 535 LNLVRPKFLKLDTSKSAVKRILAYTPCDVRGRLTGSNSDMASMFNETVEHTLQKSEDFTV 594

Query: 114 KIAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVILNLTPRQKHEIEKLKNISRKFKVS 173
           KI VIQDLREMT KVLHYYKGDFLDELPGL DFTV+LNL+P+Q +E++KL+   RKFKVS
Sbjct: 595 KIKVIQDLREMTKKVLHYYKGDFLDELPGLADFTVVLNLSPKQLNEVKKLRREKRKFKVS 654

Query: 174 SLGSALYLHP 183
           ++GSA+YLHP
Sbjct: 655 AVGSAIYLHP 664


>AT2G21450.1 | Symbols: CHR34 | chromatin remodeling 34 |
           chr2:9179622-9182356 REVERSE LENGTH=816
          Length = 816

 Score =  196 bits (498), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 104/194 (53%), Positives = 139/194 (71%), Gaps = 12/194 (6%)

Query: 1   MDSVSISCQDILLKVPSILILDEGHNPRNENTNMVHSLAKVKTQRKVVLSGTLYQNHVKE 60
            ++ S  C+ ILL+ P++LILDEGH  RN+ T M+ SLA+VKT+RKVVL+GTL+QN+V+E
Sbjct: 388 FEAASEDCKLILLEKPTLLILDEGHTSRNKETYMLSSLARVKTRRKVVLTGTLFQNNVEE 447

Query: 61  VFNILNLVRPKFLKMETSRPIVKRIHSRVHIP-GKK----------TFFDLVEDTLQKDP 109
           VFNIL+LVRPKFLK   +R IV RI S+  IP GK+          TFF  VE TLQ+  
Sbjct: 448 VFNILDLVRPKFLKRPGTREIVSRIMSKAEIPRGKQVNQSSSSIEGTFFAAVELTLQRST 507

Query: 110 DFKRKIAVIQDLREMTSKVLHYYKGDFLDELPGLVDFTVILNLTPRQKHEIEKLKNISRK 169
           +F  K ++I+DLREMT  +LHY+K DF   LPGL +FTV+LNL+  Q+ E++ L+ +   
Sbjct: 508 NFSAKASLIKDLREMTRNILHYHKADFSGLLPGLSEFTVMLNLSSIQRDEVKGLRKMEL- 566

Query: 170 FKVSSLGSALYLHP 183
           FK  SLG+ALY+HP
Sbjct: 567 FKQISLGAALYIHP 580


>AT3G32330.1 | Symbols:  | DNA repair protein-related |
           chr3:13276082-13277155 FORWARD LENGTH=327
          Length = 327

 Score =  127 bits (318), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 75/187 (40%), Positives = 118/187 (63%), Gaps = 8/187 (4%)

Query: 4   VSISCQDILLKVPSILILDEGHNPRNENTNMVHSLAKVKTQRKVVLSGTLYQNHVKEVFN 63
            S SC+DILL + S+++ D G +PRNE  + +  ++++KT  KV+L+G+LYQN++KEVFN
Sbjct: 119 ASDSCRDILLNILSVVVFDRGTDPRNEMMSFLKVVSRIKTPHKVLLTGSLYQNNIKEVFN 178

Query: 64  ILNLVRPKFLKM-ETSRPIVKRIHSRVHIPG---KKTFFDLVEDT-LQKDPDFKRKIAVI 118
           IL++  P+FLK  +  +   K ++     P    K   FD +E+  L +D D   KI  +
Sbjct: 179 ILDVAFPEFLKHNQIGKNFRKLLNVEADGPSTNLKMPLFDKLEEALLSQDSDHGDKICYL 238

Query: 119 QDLREMTSKVLHYYKGDFLDELPGLVDFTVILNLTPRQK--HEIEKLKNISRKFKVSSLG 176
            +L+ +T+KV++ +KG+ L E+PGL+DFTV+L  T  QK   E+E+  N  + FK  S  
Sbjct: 239 TELKMLTNKVIYNHKGECLLEVPGLMDFTVVLKPTSSQKSAWEVERKSN-GKGFKKYSTL 297

Query: 177 SALYLHP 183
           S + LHP
Sbjct: 298 SGIMLHP 304


>AT3G42670.1 | Symbols: CHR38, CLSY | chromatin remodeling 38 |
            chr3:14755906-14760085 REVERSE LENGTH=1256
          Length = 1256

 Score = 89.7 bits (221), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 59/168 (35%), Positives = 92/168 (54%), Gaps = 14/168 (8%)

Query: 11   ILLKVPSILILDEGHNPRNENTNMVHSLAKVKTQRKVVLSGTLYQNHVKEVFNILNLVRP 70
            +L + P +L+LDEGHNPR+  + +  +L KV T  +++LSGTL+QN+  E FN L L RP
Sbjct: 838  VLRESPGLLVLDEGHNPRSTKSRLRKALMKVDTDLRILLSGTLFQNNFCEYFNTLCLARP 897

Query: 71   KFL---------KMETSRPIVKRIHSRVHIPGKKTFFDLVEDTLQKDPDFKRKIAVIQDL 121
            KF+         K +T++   K  H  +    +K F D++   +      +R +  +  L
Sbjct: 898  KFVHEVLVELDKKFQTNQAEQKAPH-LLENRARKFFLDIIAKKIDTKVGDER-LQGLNML 955

Query: 122  REMTSKVLHYYKGDFL---DELPGLVDFTVILNLTPRQKHEIEKLKNI 166
            R MTS  +  Y+G      D LPGL  +T+++N T  Q   + KL+NI
Sbjct: 956  RNMTSGFIDNYEGSGSGSGDVLPGLQIYTLLMNSTDVQHKSLTKLQNI 1003


>AT3G24340.1 | Symbols: chr40 | chromatin remodeling 40 |
           chr3:8832085-8835722 REVERSE LENGTH=1132
          Length = 1132

 Score = 89.0 bits (219), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 56/174 (32%), Positives = 97/174 (55%), Gaps = 18/174 (10%)

Query: 11  ILLKVPSILILDEGHNPRNENTNMVHSLAKVKTQRKVVLSGTLYQNHVKEVFNILNLVRP 70
           +L+++P +L+LDEGH PRN+++ +   L +V+T++++ LSGTL+QN+ KE+ N+L L RP
Sbjct: 736 MLVELPGLLVLDEGHTPRNQSSLIWKVLTEVRTEKRIFLSGTLFQNNFKELSNVLCLARP 795

Query: 71  KFLKMETSRPIVKRIHSRVHIPGKKTFFDLVEDTLQKDPDFKRKIAVIQDLREMTSKVLH 130
                         I SR+H        +L + + + +     +   I DL+ M +  +H
Sbjct: 796 ADKDT---------ISSRIH--------ELSKCSQEGEHGRVNEENRIVDLKAMIAHFVH 838

Query: 131 YYKGDFLDE-LPGLVDFTVILNLTPRQKHEIEKLKNISRKFKVSSLGSALYLHP 183
            ++G  L E LPGL D  V+LN   +QK  ++++      F+     SA+ +HP
Sbjct: 839 VHEGTILQESLPGLRDCVVVLNPPFQQKKILDRIDTSQNTFEFEHKLSAVSVHP 892


>AT1G05490.1 | Symbols: chr31 | chromatin remodeling 31 |
            chr1:1618795-1623195 REVERSE LENGTH=1410
          Length = 1410

 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 52/157 (33%), Positives = 90/157 (57%), Gaps = 15/157 (9%)

Query: 9    QDILLKVPSILILDEGHNPRNENTNMVHSLAKVKTQRKVVLSGTLYQNHVKEVFNILNLV 68
            ++IL+  P +L+LDE H PRN+ + +  +L+KV+TQ++++LSGT +QN+  E+ N+L L 
Sbjct: 998  REILMGRPGLLVLDEAHTPRNQRSCIWKTLSKVETQKRILLSGTPFQNNFLELCNVLGLA 1057

Query: 69   RPKFLKMETSRPIVKRIHSRVHIPGKKTFFDLVEDTLQKDPDFKRKIAVIQDLREMTSKV 128
            RPK+L+  TS   +K+    V   GKK   + + +              I++L+ +    
Sbjct: 1058 RPKYLERLTS--TLKKSGMTVTKRGKKNLGNEINNR------------GIEELKAVMLPF 1103

Query: 129  LHYYKGDFL-DELPGLVDFTVILNLTPRQKHEIEKLK 164
            +H +KG  L   LPGL +  V+LN    Q+  +E ++
Sbjct: 1104 VHVHKGSILQSSLPGLRECVVVLNPPELQRRVLESIE 1140


>AT5G20420.1 | Symbols: CHR42 | chromatin remodeling 42 |
            chr5:6899015-6903266 REVERSE LENGTH=1261
          Length = 1261

 Score = 85.9 bits (211), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 55/172 (31%), Positives = 94/172 (54%), Gaps = 14/172 (8%)

Query: 11   ILLKVPSILILDEGHNPRNENTNMVHSLAKVKTQRKVVLSGTLYQNHVKEVFNILNLVRP 70
            +L + P +L+LDEGHNPR+  + +  +L KV T  +++LSGTL+QN+  E FN L L RP
Sbjct: 844  VLRESPGLLVLDEGHNPRSTKSRLRKALMKVGTDLRILLSGTLFQNNFCEYFNTLCLARP 903

Query: 71   KFL---------KMETSRPIVKRIHSRVHIPGKKTFFDLVEDTLQKDPDFKRKIAVIQDL 121
            KF+         K +T+  + K  H  +    +K F D++   +      +R +  +  L
Sbjct: 904  KFIHEVLMELDQKFKTNHGVNKAPH-LLENRARKLFLDIIAKKIDASVGDER-LQGLNML 961

Query: 122  REMTSKVLHYYKGDFL---DELPGLVDFTVILNLTPRQKHEIEKLKNISRKF 170
            + MT+  +  Y+G      D LPGL  +T+++N T  Q   + KL+++ + +
Sbjct: 962  KNMTNGFIDNYEGSGSGSGDALPGLQIYTLVMNSTDIQHKILTKLQDVIKTY 1013


>AT3G31900.1 | Symbols:  | ATP-dependent helicase family protein |
           chr3:12875071-12877422 FORWARD LENGTH=393
          Length = 393

 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 54/71 (76%)

Query: 4   VSISCQDILLKVPSILILDEGHNPRNENTNMVHSLAKVKTQRKVVLSGTLYQNHVKEVFN 63
            S SC+DILL + S+++   G +PRNE  + +  ++++KT  KV+L+G+LYQN++KEVFN
Sbjct: 300 ASDSCRDILLNILSVVVFGRGTDPRNEMMSFLKVVSRIKTPHKVLLTGSLYQNNIKEVFN 359

Query: 64  ILNLVRPKFLK 74
           IL++  P+FLK
Sbjct: 360 ILDVAFPEFLK 370


>AT3G32280.1 | Symbols:  | ATP-dependent helicase family protein |
           chr3:13233832-13240154 FORWARD LENGTH=474
          Length = 474

 Score = 71.6 bits (174), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 31/69 (44%), Positives = 50/69 (72%)

Query: 4   VSISCQDILLKVPSILILDEGHNPRNENTNMVHSLAKVKTQRKVVLSGTLYQNHVKEVFN 63
            S SC+DILL + S+++ D G +PRNE    +  ++++KT  KV+L+G+LY+N++KEVFN
Sbjct: 406 ASDSCRDILLNILSVVVFDRGTDPRNEMMCFLKVVSRIKTPHKVLLTGSLYKNNIKEVFN 465

Query: 64  ILNLVRPKF 72
           I ++  P F
Sbjct: 466 IFDVAFPNF 474


>AT1G03750.1 | Symbols: CHR9 | switch 2 | chr1:937920-941068 FORWARD
           LENGTH=862
          Length = 862

 Score = 50.1 bits (118), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 36/56 (64%)

Query: 18  ILILDEGHNPRNENTNMVHSLAKVKTQRKVVLSGTLYQNHVKEVFNILNLVRPKFL 73
           I+I DE H  +NE + +  +  ++KT++++ L+GT+ QN + E+FN+   V P  L
Sbjct: 270 IVIADEAHRLKNEKSKLYEACLEIKTKKRIGLTGTVMQNKISELFNLFEWVAPGSL 325


>AT3G54280.2 | Symbols: RGD3 | DNA binding;ATP binding;nucleic acid
            binding;binding;helicases;ATP binding;DNA
            binding;helicases | chr3:20092361-20104153 FORWARD
            LENGTH=2129
          Length = 2129

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 38/57 (66%)

Query: 20   ILDEGHNPRNENTNMVHSLAKVKTQRKVVLSGTLYQNHVKEVFNILNLVRPKFLKME 76
            ILDEGH  +N  + +  ++ ++K Q +++LSGT  QN++ E++++ + + P FL  E
Sbjct: 1613 ILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMELWSLFDFLMPGFLGTE 1669


>AT3G54280.1 | Symbols: CHR16, CHA16, RGD3, ATBTAF1, BTAF1 | DNA
            binding;ATP binding;nucleic acid
            binding;binding;helicases;ATP binding;DNA
            binding;helicases | chr3:20092361-20103807 FORWARD
            LENGTH=2045
          Length = 2045

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 38/57 (66%)

Query: 20   ILDEGHNPRNENTNMVHSLAKVKTQRKVVLSGTLYQNHVKEVFNILNLVRPKFLKME 76
            ILDEGH  +N  + +  ++ ++K Q +++LSGT  QN++ E++++ + + P FL  E
Sbjct: 1582 ILDEGHIIKNAKSKITAAVKQLKAQHRLILSGTPIQNNIMELWSLFDFLMPGFLGTE 1638


>AT5G63950.1 | Symbols: CHR24 | chromatin remodeling 24 |
           chr5:25592160-25598405 REVERSE LENGTH=1090
          Length = 1090

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 21/55 (38%), Positives = 35/55 (63%)

Query: 19  LILDEGHNPRNENTNMVHSLAKVKTQRKVVLSGTLYQNHVKEVFNILNLVRPKFL 73
           +ILDEGH  +N NT    SL ++ +  ++++SGT  QN++KE++ + N   P  L
Sbjct: 512 MILDEGHLIKNPNTQRAKSLLEIPSSHRIIISGTPIQNNLKELWALFNFSCPGLL 566