Miyakogusa Predicted Gene

Lj0g3v0215559.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0215559.1 Non Chatacterized Hit- tr|A5AVY9|A5AVY9_VITVI
Putative uncharacterized protein OS=Vitis vinifera
GN=,36.21,7e-19,UBN2_3,NULL; seg,NULL,CUFF.13896.1
         (259 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G21280.1 | Symbols:  | CONTAINS InterPro DOMAIN/s: Retrotrans...   103   2e-22

>AT1G21280.1 | Symbols:  | CONTAINS InterPro DOMAIN/s:
           Retrotransposon gag protein (InterPro:IPR005162); Has
           707 Blast hits to 705 proteins in 25 species: Archae -
           0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 703;
           Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
           | chr1:7447690-7448403 REVERSE LENGTH=237
          Length = 237

 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 46/144 (31%), Positives = 78/144 (54%), Gaps = 1/144 (0%)

Query: 5   LKTKNKHGFVDGSLPKPAADDPLFGVWDRCNTLVISWLTQAMDPVIAQNILWMDLASEIW 64
           L+   K GF+DG+LPKP    PL+  W++CN +V+ WL  +M   + +++++ + A ++W
Sbjct: 53  LRVTKKFGFIDGTLPKPDPFSPLYQPWEQCNAMVMYWLMNSMTDKLLESVMYAETAHKMW 112

Query: 65  ADLKSRYYQGDLFRISDLQEELYSLKQGDMPITTYFTRLKSLWQELEAFRPIPSCTCAVS 124
            DL+  +      +I  L+  L +L+QG   +  YF +L  +W EL  + PIP C C   
Sbjct: 113 EDLRRVFVPCVDLKIYQLRRRLATLRQGGDSVEEYFGKLSKVWMELSEYAPIPECKCG-G 171

Query: 125 CTCDLIPIVKSYRDSDYVIRFLKG 148
           C C+     +  R+ +    FL G
Sbjct: 172 CNCECTKRAEEAREKEQRYEFLMG 195