Miyakogusa Predicted Gene

Lj0g3v0214359.1

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0214359.1 CUFF.13808.1
         (447 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G67100.1 | Symbols: ICU2 | DNA-directed DNA polymerases | chr...   600   e-172
AT5G63960.1 | Symbols: EMB2780 | DNA binding;nucleotide binding;...    93   5e-19
AT5G63960.2 | Symbols: EMB2780 | DNA binding;nucleotide binding;...    92   6e-19
AT1G67500.2 | Symbols: REV3 | recovery protein 3 | chr1:25287707...    74   2e-13
AT1G67500.1 | Symbols: ATREV3, REV3 | recovery protein 3 | chr1:...    74   2e-13

>AT5G67100.1 | Symbols: ICU2 | DNA-directed DNA polymerases |
           chr5:26776994-26785104 FORWARD LENGTH=1524
          Length = 1524

 Score =  600 bits (1547), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 301/444 (67%), Positives = 353/444 (79%), Gaps = 5/444 (1%)

Query: 2   PPVVVTAINLKTILNEEQNINEIVSASVVCCNMVKIDTPMLASEWKRPGKLTHFTVIRKL 61
           PP VVTAINLKTI+NE+QNI+EIVSASV+C +  KID PM A E KR G L+HFTV+R  
Sbjct: 559 PPAVVTAINLKTIVNEKQNISEIVSASVLCFHNAKIDVPMPAPERKRSGILSHFTVVRNP 618

Query: 62  HGNIFPLGFNKEVTDRNTKAGSNIVCAESSERALLNRLMLELHKLDTDVLVGHNISGFDL 121
            G  +P+G+ KEV+DRN+K G N++  E+SERALLNRL LEL+KLD+D+LVGHNISGFDL
Sbjct: 619 EGTGYPIGWKKEVSDRNSKNGCNVLSIENSERALLNRLFLELNKLDSDILVGHNISGFDL 678

Query: 122 DVLLHRSQACKVPSSMWSKLGRLNRSTMPKLDRRKKTFGSGADPGIMSCIAGRLLCDTYL 181
           DVLL R+QACKV SSMWSK+GRL RS MPKL +    +GSGA PG+MSCIAGRLLCDT L
Sbjct: 679 DVLLQRAQACKVQSSMWSKIGRLKRSFMPKL-KGNSNYGSGATPGLMSCIAGRLLCDTDL 737

Query: 182 SSRDLLKEVSYSLTELAKTQLNKFRKEVAPHGIPKMFQTAESLMELIEYGETDAWLSMEL 241
            SRDLLKEVSYSLT+L+KTQLN+ RKE+AP+ IPKMFQ++++L+ELIE GETDAWLSMEL
Sbjct: 738 CSRDLLKEVSYSLTDLSKTQLNRDRKEIAPNDIPKMFQSSKTLVELIECGETDAWLSMEL 797

Query: 242 MFHLSILPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKFSNYAKETK 301
           MFHLS+LPLT QLTNISGNLWGKTLQGARAQR+EY LLH FH+KK+I+PDK S   KE K
Sbjct: 798 MFHLSVLPLTLQLTNISGNLWGKTLQGARAQRIEYYLLHTFHSKKFILPDKISQRMKEIK 857

Query: 302 LTKRRVTHGVXXXXXXXXXXXXXXYHNNASEIDHXXXXXXXXYAGGLVLEPKKGLYDKYI 361
            +KRR+ +                  N+ S+           YAGGLVLEPK+GLYDKY+
Sbjct: 858 SSKRRMDY-APEDRNVDELDADLTLENDPSK--GSKTKKGPAYAGGLVLEPKRGLYDKYV 914

Query: 362 LLLDFNSLYPSIIQEYNICFTTVERSFDGSFPRLPSSTITGILPELLENLVKRRKSVKTW 421
           LLLDFNSLYPSIIQEYNICFTT+ RS DG  PRLPSS   GILP+L+E+LV  RKSVK  
Sbjct: 915 LLLDFNSLYPSIIQEYNICFTTIPRSEDG-VPRLPSSQTPGILPKLMEHLVSIRKSVKLK 973

Query: 422 MKTASGLKYQQFDIQQQALKLTAN 445
           MK  +GLKY + DI+QQALKLTAN
Sbjct: 974 MKKETGLKYWELDIRQQALKLTAN 997


>AT5G63960.1 | Symbols: EMB2780 | DNA binding;nucleotide
           binding;nucleic acid binding;DNA-directed DNA
           polymerases;DNA-directed DNA polymerases |
           chr5:25599597-25606672 FORWARD LENGTH=1095
          Length = 1095

 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 162/387 (41%), Gaps = 74/387 (19%)

Query: 82  GSNIVCAESSERALLNRLMLELHKLDTDVLVGHNISGFDLDVLLHRSQACKVPSSMWSKL 141
           G +++  E+    LL    L +  +D D+++G+NI  FDL  L+ R+    +    +  L
Sbjct: 361 GVDVMSFETEREVLLAWRDL-IRDVDPDIIIGYNICKFDLPYLIERAATLGIEE--FPLL 417

Query: 142 GRLNRSTMPKLDRRKKTFGS---GADPGIMSCIAGRLLCDTYLSSRDLLKEVSYSLTELA 198
           GR+  S   ++  R  TF S   G      + I GR   D   +     K  SYSL  ++
Sbjct: 418 GRVKNS---RVRVRDSTFSSRQQGIRESKETTIEGRFQFDLIQAIHRDHKLSSYSLNSVS 474

Query: 199 KTQLNKFRKEVAPHGIPKMFQT--AESLMELIEYGETDAWLSMELMFHLSILPLTRQLTN 256
              L++ +KE   H I    Q   AE+   L  Y   DA+L   L+  L  +    ++  
Sbjct: 475 AHFLSE-QKEDVHHSIITDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMAR 533

Query: 257 ISGNLWGKTLQGARAQRVEYL--LLHAFHAKKYIVPDKFSNYAKETKLTKRRVTHGVXXX 314
           ++G      L  AR Q ++ L  LL     K  ++P+     AK++              
Sbjct: 534 VTGVPISFLL--ARGQSIKVLSQLLRKGKQKNLVLPN-----AKQS-------------- 572

Query: 315 XXXXXXXXXXXYHNNASEIDHXXXXXXXXYAGGLVLEPKKGLYDKYILLLDFNSLYPSII 374
                           SE           Y G  VLE + G Y+K I  LDF SLYPSI+
Sbjct: 573 ---------------GSE--------QGTYEGATVLEARTGFYEKPIATLDFASLYPSIM 609

Query: 375 QEYNICFTTVERSFDGSFPRLPSSTIT---------------GILPELLENLVKRRKSVK 419
             YN+C+ T+    D     LP   +T               GILPE+LE L+  RK  K
Sbjct: 610 MAYNLCYCTLVTPEDVRKLNLPPEHVTKTPSGETFVKQTLQKGILPEILEELLTARKRAK 669

Query: 420 TWMKTASG-LKYQQFDIQQQALKLTAN 445
             +K A   L+    D +Q ALK++AN
Sbjct: 670 ADLKEAKDPLEKAVLDGRQLALKISAN 696


>AT5G63960.2 | Symbols: EMB2780 | DNA binding;nucleotide
           binding;nucleic acid binding;DNA-directed DNA
           polymerases;DNA-directed DNA polymerases |
           chr5:25599597-25606672 FORWARD LENGTH=1112
          Length = 1112

 Score = 92.4 bits (228), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 108/383 (28%), Positives = 158/383 (41%), Gaps = 80/383 (20%)

Query: 86  VCAESSERALLNRLMLELHKLDTDVLVGHNISGFDLDVLLHRSQACKVPSSMWSKLGRLN 145
           +C  SS   L+         +D D+++G+NI  FDL  L+ R+    +    +  LGR+ 
Sbjct: 388 ICITSSSSDLI-------RDVDPDIIIGYNICKFDLPYLIERAATLGIEE--FPLLGRVK 438

Query: 146 RSTMPKLDRRKKTFGS---GADPGIMSCIAGRLLCDTYLSSRDLLKEVSYSLTELAKTQL 202
            S   ++  R  TF S   G      + I GR   D   +     K  SYSL  ++   L
Sbjct: 439 NS---RVRVRDSTFSSRQQGIRESKETTIEGRFQFDLIQAIHRDHKLSSYSLNSVSAHFL 495

Query: 203 NKFRKEVAPHGIPKMFQT--AESLMELIEYGETDAWLSMELMFHLSILPLTRQLTNISGN 260
           ++ +KE   H I    Q   AE+   L  Y   DA+L   L+  L  +    ++  ++G 
Sbjct: 496 SE-QKEDVHHSIITDLQNGNAETRRRLAVYCLKDAYLPQRLLDKLMFIYNYVEMARVTGV 554

Query: 261 LWGKTLQGARAQRVEYL--LLHAFHAKKYIVPDKFSNYAKETKLTKRRVTHGVXXXXXXX 318
                L  AR Q ++ L  LL     K  ++P+     AK++                  
Sbjct: 555 PISFLL--ARGQSIKVLSQLLRKGKQKNLVLPN-----AKQS------------------ 589

Query: 319 XXXXXXXYHNNASEIDHXXXXXXXXYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYN 378
                       SE           Y G  VLE + G Y+K I  LDF SLYPSI+  YN
Sbjct: 590 -----------GSE--------QGTYEGATVLEARTGFYEKPIATLDFASLYPSIMMAYN 630

Query: 379 ICFTTVERSFDGSFPRLPSSTIT---------------GILPELLENLVKRRKSVKTWMK 423
           +C+ T+    D     LP   +T               GILPE+LE L+  RK  K  +K
Sbjct: 631 LCYCTLVTPEDVRKLNLPPEHVTKTPSGETFVKQTLQKGILPEILEELLTARKRAKADLK 690

Query: 424 TASG-LKYQQFDIQQQALKLTAN 445
            A   L+    D +Q ALK++AN
Sbjct: 691 EAKDPLEKAVLDGRQLALKISAN 713


>AT1G67500.2 | Symbols: REV3 | recovery protein 3 |
            chr1:25287707-25296714 REVERSE LENGTH=1916
          Length = 1916

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 93/411 (22%), Positives = 153/411 (37%), Gaps = 99/411 (24%)

Query: 92   ERALLNRLMLELHKLDTDVLVGHNISGFDLDVLLHRSQACKVPSSMWSKLGRLNRSTMPK 151
            ER L    +  L K D DVL+G +I G  +  L  R  A ++     + + R    T   
Sbjct: 1129 ERQLFRYFIETLCKWDPDVLLGWDIQGGSIGFLAER--AAQLGIRFLNNISRTPSPTTTN 1186

Query: 152  LDRRKKTFGSG--ADPGIMSC---------------------IAGRLLCDTYLSSRDLLK 188
                K+  G+    DP + +                      + GR++ + +   R  +K
Sbjct: 1187 NSDNKRKLGNNLLPDPLVANPAQVEEVVIEDEWGRTHASGVHVGGRIVLNAWRLIRGEVK 1246

Query: 189  EVSYSLTELAKTQLNKFRKEVAPHGIPKMFQT--AESLMELIEYGETDAWLSMELMFHLS 246
               Y++  +++  L +    +    + + F +  A +    IEY    A L++E+M  L 
Sbjct: 1247 LNMYTIEAVSEAVLRQKVPSIPYKVLTEWFSSGPAGARYRCIEYVIRRANLNLEIMSQLD 1306

Query: 247  ILPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKFSNYAKETKLTKRR 306
            ++  T +L  + G  +   L      RVE +LL   H + Y+                  
Sbjct: 1307 MINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLA----------------- 1349

Query: 307  VTHGVXXXXXXXXXXXXXXYHNNASEIDHXXXXXXXXYAGGLVLEPKKGLYDKYILLLDF 366
            ++ G                       +             LV+EP+   YD  +++LDF
Sbjct: 1350 ISPG-----------------------NQQVASQPAMECVPLVMEPESAFYDDPVIVLDF 1386

Query: 367  NSLYPSIIQEYNICFTTV---------------ERSFD--------------GSFPRLPS 397
             SLYPS+I  YN+CF+T                  S D               S   +P 
Sbjct: 1387 QSLYPSMIIAYNLCFSTCLGKLAHLKMNTLGVSSYSLDLDVLQDLNQILQTPNSVMYVPP 1446

Query: 398  STITGILPELLENLVKRRKSVKTWMK---TASGLKYQQFDIQQQALKLTAN 445
                GILP LLE ++  R  VK  MK    +  + ++ F+ +Q ALKL AN
Sbjct: 1447 EVRRGILPRLLEEILSTRIMVKKAMKKLTPSEAVLHRIFNARQLALKLIAN 1497


>AT1G67500.1 | Symbols: ATREV3, REV3 | recovery protein 3 |
            chr1:25287707-25296714 REVERSE LENGTH=1890
          Length = 1890

 Score = 73.9 bits (180), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 93/411 (22%), Positives = 153/411 (37%), Gaps = 99/411 (24%)

Query: 92   ERALLNRLMLELHKLDTDVLVGHNISGFDLDVLLHRSQACKVPSSMWSKLGRLNRSTMPK 151
            ER L    +  L K D DVL+G +I G  +  L  R  A ++     + + R    T   
Sbjct: 1103 ERQLFRYFIETLCKWDPDVLLGWDIQGGSIGFLAER--AAQLGIRFLNNISRTPSPTTTN 1160

Query: 152  LDRRKKTFGSG--ADPGIMSC---------------------IAGRLLCDTYLSSRDLLK 188
                K+  G+    DP + +                      + GR++ + +   R  +K
Sbjct: 1161 NSDNKRKLGNNLLPDPLVANPAQVEEVVIEDEWGRTHASGVHVGGRIVLNAWRLIRGEVK 1220

Query: 189  EVSYSLTELAKTQLNKFRKEVAPHGIPKMFQT--AESLMELIEYGETDAWLSMELMFHLS 246
               Y++  +++  L +    +    + + F +  A +    IEY    A L++E+M  L 
Sbjct: 1221 LNMYTIEAVSEAVLRQKVPSIPYKVLTEWFSSGPAGARYRCIEYVIRRANLNLEIMSQLD 1280

Query: 247  ILPLTRQLTNISGNLWGKTLQGARAQRVEYLLLHAFHAKKYIVPDKFSNYAKETKLTKRR 306
            ++  T +L  + G  +   L      RVE +LL   H + Y+                  
Sbjct: 1281 MINRTSELARVFGIDFFSVLSRGSQYRVESMLLRLAHTQNYLA----------------- 1323

Query: 307  VTHGVXXXXXXXXXXXXXXYHNNASEIDHXXXXXXXXYAGGLVLEPKKGLYDKYILLLDF 366
            ++ G                       +             LV+EP+   YD  +++LDF
Sbjct: 1324 ISPG-----------------------NQQVASQPAMECVPLVMEPESAFYDDPVIVLDF 1360

Query: 367  NSLYPSIIQEYNICFTTV---------------ERSFD--------------GSFPRLPS 397
             SLYPS+I  YN+CF+T                  S D               S   +P 
Sbjct: 1361 QSLYPSMIIAYNLCFSTCLGKLAHLKMNTLGVSSYSLDLDVLQDLNQILQTPNSVMYVPP 1420

Query: 398  STITGILPELLENLVKRRKSVKTWMK---TASGLKYQQFDIQQQALKLTAN 445
                GILP LLE ++  R  VK  MK    +  + ++ F+ +Q ALKL AN
Sbjct: 1421 EVRRGILPRLLEEILSTRIMVKKAMKKLTPSEAVLHRIFNARQLALKLIAN 1471