Miyakogusa Predicted Gene

Lj0g3v0213949.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0213949.1 tr|I0YUK2|I0YUK2_9CHLO RBP11-like subunits of RNA
polymerase OS=Coccomyxa subellipsoidea C-169 PE=4
,49.44,2e-19,RBP11-like subunits of RNA polymerase,DNA-directed RNA
polymerase, RBP11-like; RNA_pol_L_2,NULL; no ,CUFF.13782.1
         (104 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT2G29540.2 | Symbols: ATRPC14, ATRPAC14, RPC14 | RNApolymerase ...   135   8e-33
AT2G29540.1 | Symbols: ATRPC14, ATRPAC14, RPC14 | RNApolymerase ...   135   8e-33
AT2G29540.3 | Symbols: ATRPC14, ATRPAC14, RPC14 | RNApolymerase ...    87   2e-18
AT3G52090.1 | Symbols: ATRPB13.6, NRPB11, NRPD11, NRPE11 | DNA-d...    51   1e-07

>AT2G29540.2 | Symbols: ATRPC14, ATRPAC14, RPC14 | RNApolymerase
          14 kDa subunit | chr2:12642727-12643828 FORWARD
          LENGTH=122
          Length = 122

 Score =  135 bits (339), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 76/93 (81%)

Query: 1  MEHGSHSDESKSTFSLTDEDHTFANAIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
          MEHGS ++ S ++F+L++EDHT ANA+R+ LNQDPRVT   Y+IPHPS  +VNIRVQTTG
Sbjct: 1  MEHGSFTNVSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTG 60

Query: 61 EPAREVLKDSCQHMMLMCQHVKGTFDKAVNDFK 93
          +PAREV KD+CQ +M M +HV+  FDKAV ++K
Sbjct: 61 DPAREVFKDACQELMQMNRHVRSVFDKAVAEYK 93


>AT2G29540.1 | Symbols: ATRPC14, ATRPAC14, RPC14 | RNApolymerase
          14 kDa subunit | chr2:12642727-12643828 FORWARD
          LENGTH=122
          Length = 122

 Score =  135 bits (339), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 58/93 (62%), Positives = 76/93 (81%)

Query: 1  MEHGSHSDESKSTFSLTDEDHTFANAIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTG 60
          MEHGS ++ S ++F+L++EDHT ANA+R+ LNQDPRVT   Y+IPHPS  +VNIRVQTTG
Sbjct: 1  MEHGSFTNVSHASFTLSEEDHTLANAVRFVLNQDPRVTVAAYTIPHPSLEQVNIRVQTTG 60

Query: 61 EPAREVLKDSCQHMMLMCQHVKGTFDKAVNDFK 93
          +PAREV KD+CQ +M M +HV+  FDKAV ++K
Sbjct: 61 DPAREVFKDACQELMQMNRHVRSVFDKAVAEYK 93


>AT2G29540.3 | Symbols: ATRPC14, ATRPAC14, RPC14 | RNApolymerase 14
           kDa subunit | chr2:12643288-12643828 FORWARD LENGTH=139
          Length = 139

 Score = 87.0 bits (214), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 38/59 (64%), Positives = 47/59 (79%)

Query: 35  PRVTFCGYSIPHPSDNRVNIRVQTTGEPAREVLKDSCQHMMLMCQHVKGTFDKAVNDFK 93
           PRVT   Y+IPHPS  +VNIRVQTTG+PAREV KD+CQ +M M +HV+  FDKAV ++K
Sbjct: 52  PRVTVAAYTIPHPSLEQVNIRVQTTGDPAREVFKDACQELMQMNRHVRSVFDKAVAEYK 110


>AT3G52090.1 | Symbols: ATRPB13.6, NRPB11, NRPD11, NRPE11 |
          DNA-directed RNA polymerase, RBP11-like |
          chr3:19318069-19318998 REVERSE LENGTH=116
          Length = 116

 Score = 51.2 bits (121), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 19/50 (38%), Positives = 32/50 (64%)

Query: 12 STFSLTDEDHTFANAIRYTLNQDPRVTFCGYSIPHPSDNRVNIRVQTTGE 61
          ++F++  EDHT  N +R  L++D  V F GY +PHP   ++ +R+ TT +
Sbjct: 31 ASFTVEREDHTIGNIVRMQLHRDENVLFAGYQLPHPLKYKIIVRIHTTSQ 80