Miyakogusa Predicted Gene

Lj0g3v0213779.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0213779.1 tr|B9RD17|B9RD17_RICCO Actin-related protein 2/3
complex subunit 5 OS=Ricinus communis GN=RCOM_16088,76.19,6e-19,ARP2/3
COMPLEX 16 KD SUBUNIT (P16-ARC),ARP2/3 complex 16kDa subunit
(p16-Arc); Arp2/3 complex 16 kDa,CUFF.13758.1
         (135 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT4G01710.1 | Symbols: CRK, ARPC5 | ARP2/3 complex 16 kDa subuni...   231   1e-61
AT5G65274.1 | Symbols:  | ARP2/3 complex 16 kDa subunit (p16-Arc...   218   9e-58

>AT4G01710.1 | Symbols: CRK, ARPC5 | ARP2/3 complex 16 kDa subunit
           (p16-Arc) | chr4:735776-736450 FORWARD LENGTH=132
          Length = 132

 Score =  231 bits (589), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 112/129 (86%), Positives = 120/129 (93%)

Query: 7   FVEADNAEAIIARIEHKSRKIESLLKQYKPVEALKTALEGTYAMTSDERCKSAHWIAVHR 66
           FVEADNAEAIIARIE KSRKIESLLKQYK VEALKTALEG+   T DERCKSA+WI VHR
Sbjct: 4   FVEADNAEAIIARIETKSRKIESLLKQYKHVEALKTALEGSPPKTRDERCKSANWIVVHR 63

Query: 67  ALMAIKDVDGMLSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAGLGCILR 126
           ALMAIKD+DGML++LD EYYDILMKYLYRGLSTGDRPTCDQCL+IHEKLTE+AGLGCILR
Sbjct: 64  ALMAIKDIDGMLNALDVEYYDILMKYLYRGLSTGDRPTCDQCLKIHEKLTERAGLGCILR 123

Query: 127 FLTDTVNTV 135
            LTDT+NTV
Sbjct: 124 CLTDTINTV 132


>AT5G65274.1 | Symbols:  | ARP2/3 complex 16 kDa subunit (p16-Arc) |
           chr5:26085300-26085960 FORWARD LENGTH=135
          Length = 135

 Score =  218 bits (555), Expect = 9e-58,   Method: Compositional matrix adjust.
 Identities = 106/135 (78%), Positives = 118/135 (87%)

Query: 1   MAGAEGFVEADNAEAIIARIEHKSRKIESLLKQYKPVEALKTALEGTYAMTSDERCKSAH 60
           MAGA  FVEADNAE I+ARIE KS+KIESLLK YK VEALKTAL+G+   T DERCKSA+
Sbjct: 1   MAGAAAFVEADNAEEIMARIETKSQKIESLLKHYKHVEALKTALDGSPPKTLDERCKSAN 60

Query: 61  WIAVHRALMAIKDVDGMLSSLDPEYYDILMKYLYRGLSTGDRPTCDQCLRIHEKLTEKAG 120
           WI VHRA+MAIKD++GML+SL  EYYDILMKYLYRGLSTGD PTC+QCL IHEKLTE+AG
Sbjct: 61  WIVVHRAIMAIKDIEGMLNSLTAEYYDILMKYLYRGLSTGDEPTCEQCLMIHEKLTERAG 120

Query: 121 LGCILRFLTDTVNTV 135
           LGCILR L+DT NTV
Sbjct: 121 LGCILRCLSDTTNTV 135