Miyakogusa Predicted Gene
- Lj0g3v0213029.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0213029.1 Non Chatacterized Hit- tr|I3SNF0|I3SNF0_LOTJA
Uncharacterized protein OS=Lotus japonicus PE=2
SV=1,98.92,0,RNA-BINDING PROTEIN RELATED,NULL; KH_1,K Homology domain,
type 1; K homology RNA-binding domain,K Ho,CUFF.13695.1
(279 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT2G38610.2 | Symbols: | RNA-binding KH domain-containing prote... 352 2e-97
AT2G38610.1 | Symbols: | RNA-binding KH domain-containing prote... 352 2e-97
AT3G08620.1 | Symbols: | RNA-binding KH domain-containing prote... 348 2e-96
AT5G56140.1 | Symbols: | RNA-binding KH domain-containing prote... 271 4e-73
AT4G26480.1 | Symbols: | RNA-binding KH domain-containing prote... 271 5e-73
AT1G09660.1 | Symbols: | RNA-binding KH domain-containing prote... 261 4e-70
AT1G09660.2 | Symbols: | RNA-binding KH domain-containing prote... 212 2e-55
AT5G51300.3 | Symbols: | splicing factor-related | chr5:2084988... 102 4e-22
AT5G51300.2 | Symbols: | splicing factor-related | chr5:2084988... 102 4e-22
AT5G51300.1 | Symbols: | splicing factor-related | chr5:2084988... 102 4e-22
>AT2G38610.2 | Symbols: | RNA-binding KH domain-containing protein
| chr2:16147552-16149638 REVERSE LENGTH=286
Length = 286
Score = 352 bits (902), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 191/290 (65%), Positives = 224/290 (77%), Gaps = 19/290 (6%)
Query: 1 MSGLYNQISSPATARASSPNINIRSNFNVDS-QYLAELLEEYQKLRPFMQVLPLCTRLLN 59
MSGLYN S + ARA+SP I RS +DS QYL ELL E+QKL PFMQVLP+C+RLLN
Sbjct: 1 MSGLYNNSSYFSPARAASPQI--RSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLN 58
Query: 60 QEILRVSGKNGLIQNQGFSDYDRVQFGSHNP---SLLPSLETTTNFTGWNSLSHK----- 111
QE+ RVSG ++ NQGF D+DR++ S +P S L S + T GWN LS +
Sbjct: 59 QEMFRVSG---MMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQERLSGT 115
Query: 112 -GLNVDWQTTPSVPNSPIVKRILRLDIPSDSYPNFNFVGRLLGPRGNSLKRVEATTGCRV 170
G+ +DWQ P P+S VKRILRL+IP D+YPNFNFVGRLLGPRGNSLKRVEATTGCRV
Sbjct: 116 PGMTMDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRV 175
Query: 171 FIRGQGSIKDPDKEEVLRGKPGYEHLNEPLHVLIEAELPVNVVDIRLRQAQEIIENLLKP 230
FIRG+GSIKDP+KE+ LRG+PGYEHLNE LH+LIEA+LP ++V+IRLRQAQEIIE LLKP
Sbjct: 176 FIRGKGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKP 235
Query: 231 VDETQDFYKRQQLRELAMLNS-NFREESPQLS--GSLSPFTSNEIKRAKT 277
VDE+QDF KRQQLRELA+LNS N REESP S GS+SPF S+ KR KT
Sbjct: 236 VDESQDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKT 284
>AT2G38610.1 | Symbols: | RNA-binding KH domain-containing protein
| chr2:16147552-16149638 REVERSE LENGTH=286
Length = 286
Score = 352 bits (902), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 191/290 (65%), Positives = 224/290 (77%), Gaps = 19/290 (6%)
Query: 1 MSGLYNQISSPATARASSPNINIRSNFNVDS-QYLAELLEEYQKLRPFMQVLPLCTRLLN 59
MSGLYN S + ARA+SP I RS +DS QYL ELL E+QKL PFMQVLP+C+RLLN
Sbjct: 1 MSGLYNNSSYFSPARAASPQI--RSTPEIDSSQYLTELLAEHQKLTPFMQVLPICSRLLN 58
Query: 60 QEILRVSGKNGLIQNQGFSDYDRVQFGSHNP---SLLPSLETTTNFTGWNSLSHK----- 111
QE+ RVSG ++ NQGF D+DR++ S +P S L S + T GWN LS +
Sbjct: 59 QEMFRVSG---MMSNQGFGDFDRLRHRSPSPMASSNLMSNVSNTGLGGWNGLSQERLSGT 115
Query: 112 -GLNVDWQTTPSVPNSPIVKRILRLDIPSDSYPNFNFVGRLLGPRGNSLKRVEATTGCRV 170
G+ +DWQ P P+S VKRILRL+IP D+YPNFNFVGRLLGPRGNSLKRVEATTGCRV
Sbjct: 116 PGMTMDWQGAPGSPSSYTVKRILRLEIPVDNYPNFNFVGRLLGPRGNSLKRVEATTGCRV 175
Query: 171 FIRGQGSIKDPDKEEVLRGKPGYEHLNEPLHVLIEAELPVNVVDIRLRQAQEIIENLLKP 230
FIRG+GSIKDP+KE+ LRG+PGYEHLNE LH+LIEA+LP ++V+IRLRQAQEIIE LLKP
Sbjct: 176 FIRGKGSIKDPEKEDKLRGRPGYEHLNEQLHILIEADLPASIVEIRLRQAQEIIEELLKP 235
Query: 231 VDETQDFYKRQQLRELAMLNS-NFREESPQLS--GSLSPFTSNEIKRAKT 277
VDE+QDF KRQQLRELA+LNS N REESP S GS+SPF S+ KR KT
Sbjct: 236 VDESQDFIKRQQLRELALLNSNNLREESPGPSGGGSVSPFNSSG-KRPKT 284
>AT3G08620.1 | Symbols: | RNA-binding KH domain-containing protein
| chr3:2617925-2620314 FORWARD LENGTH=283
Length = 283
Score = 348 bits (894), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 177/286 (61%), Positives = 226/286 (79%), Gaps = 14/286 (4%)
Query: 1 MSGLYNQISSPATARASSPNINIRSNFNVDSQYLAELLEEYQKLRPFMQVLPLCTRLLNQ 60
MSGLYN ++ + +RA+SP I S+ +VDSQY+++LL E+QKL PFMQVLP+C+RLLNQ
Sbjct: 1 MSGLYN-YNNFSPSRAASPQIRTPSS-DVDSQYISQLLAEHQKLGPFMQVLPICSRLLNQ 58
Query: 61 EILRVSGKNGLIQNQGFSDYDRVQFGSHNPSLLPSLETTTNFTGWNSLSH---------K 111
EI R++G ++ NQGF+D+DR++ S +P P+L + + G +
Sbjct: 59 EIFRITG---MMPNQGFTDFDRLRHRSPSPMASPNLMSNVSGGGLGGWNGLPPERIGGPH 115
Query: 112 GLNVDWQTTPSVPNSPIVKRILRLDIPSDSYPNFNFVGRLLGPRGNSLKRVEATTGCRVF 171
G+ ++WQ P+ P+S VKRILRLD+P D+YPNFNFVGRLLGPRGNSLKRVEATTGCRV+
Sbjct: 116 GMAMEWQGAPASPSSYPVKRILRLDLPVDTYPNFNFVGRLLGPRGNSLKRVEATTGCRVY 175
Query: 172 IRGQGSIKDPDKEEVLRGKPGYEHLNEPLHVLIEAELPVNVVDIRLRQAQEIIENLLKPV 231
IRG+GSIKDP+KEE L+GKPGYEHLNE LH+LIEA+LP+++VDI+LRQAQEIIE L+KPV
Sbjct: 176 IRGKGSIKDPEKEEKLKGKPGYEHLNEQLHILIEADLPIDIVDIKLRQAQEIIEELVKPV 235
Query: 232 DETQDFYKRQQLRELAMLNSNFREESPQLSGSLSPFTSNEIKRAKT 277
DE+QD+ KRQQLRELA+LNSN RE SP SGS+SPF SN +KR KT
Sbjct: 236 DESQDYIKRQQLRELALLNSNLRENSPGPSGSVSPFNSNAMKRPKT 281
>AT5G56140.1 | Symbols: | RNA-binding KH domain-containing protein
| chr5:22725462-22727932 FORWARD LENGTH=315
Length = 315
Score = 271 bits (692), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 152/289 (52%), Positives = 194/289 (67%), Gaps = 23/289 (7%)
Query: 6 NQISSPATARASSPNIN--IRSNFNV---DSQYLAELLEEYQKLRPFMQVLPLCTRLLNQ 60
+ +S P +A SPN + +RS +V +YL+ELL E KL PF+ VLP RLLNQ
Sbjct: 34 SSLSVPPSA-PQSPNYSGGLRSQSSVFVEQEKYLSELLAERHKLTPFLPVLPHAFRLLNQ 92
Query: 61 EILRVSGKNGLIQNQGFSDYDRVQFGSHNPSLLPS----LETTTNFTGWNSLSHKGLNV- 115
EILRV+ L++N Q G +PS L S + GW S +V
Sbjct: 93 EILRVTT---LLENATVLS----QSGLDHPSPLASGGIFQNARADMNGWASQFPSERSVP 145
Query: 116 -----DWQTTPSVPNSPIVKRILRLDIPSDSYPNFNFVGRLLGPRGNSLKRVEATTGCRV 170
+W +P + I KR +R+DIP D+YPNFNFVGRLLGPRGNSLKRVEA+T CRV
Sbjct: 146 SSPGPNWLNSPGSSSGLIAKRTIRVDIPVDNYPNFNFVGRLLGPRGNSLKRVEASTDCRV 205
Query: 171 FIRGQGSIKDPDKEEVLRGKPGYEHLNEPLHVLIEAELPVNVVDIRLRQAQEIIENLLKP 230
IRG+GSIKDP KEE++RGKPGYEHLNEPLH+L+EAELP+ +VD RL QA+EI+++LL P
Sbjct: 206 LIRGRGSIKDPIKEEMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTP 265
Query: 231 VDETQDFYKRQQLRELAMLNSNFREESPQLSGSLSPFTSNEIKRAKTDQ 279
++ET D YK+QQLRELA+LN REE +SGS+SP+ S +KRAKT +
Sbjct: 266 MEETHDMYKKQQLRELALLNGTLREEGSPMSGSVSPYNSLGMKRAKTRE 314
>AT4G26480.1 | Symbols: | RNA-binding KH domain-containing protein
| chr4:13372885-13375793 REVERSE LENGTH=308
Length = 308
Score = 271 bits (692), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 156/287 (54%), Positives = 198/287 (68%), Gaps = 29/287 (10%)
Query: 8 ISSPATARASSPNIN--IRS--NFNVDSQ-YLAELLEEYQKLRPFMQVLPLCTRLLNQEI 62
+S P +A SPN + +RS +F V+ + YL+ELL E KL PF+ VLP RL+NQEI
Sbjct: 32 LSVPPSA-PQSPNFSGGLRSQPSFLVEQEKYLSELLAERHKLTPFLPVLPHVCRLMNQEI 90
Query: 63 LRVSG--KNGLIQNQGFSDYDRVQFGSHNPSLLPS----LETTTNFTGWNSLSHKGLNVD 116
LRV+ +N L Q S +D +PS L S + + GW S +V
Sbjct: 91 LRVTTLLENALSQ----SRFD-------HPSPLASGGIFQNSRADMNGWASQFPSERSVS 139
Query: 117 WQTTPSVPNSP------IVKRILRLDIPSDSYPNFNFVGRLLGPRGNSLKRVEATTGCRV 170
P+ NSP IVKR +R+DIP D YPN+NFVGRLLGPRGNSLKRVEA+T CRV
Sbjct: 140 SSPAPNWLNSPGSSSGLIVKRTIRVDIPVDKYPNYNFVGRLLGPRGNSLKRVEASTDCRV 199
Query: 171 FIRGQGSIKDPDKEEVLRGKPGYEHLNEPLHVLIEAELPVNVVDIRLRQAQEIIENLLKP 230
IRG+GSIKDP KE+++RGKPGYEHLNEPLH+L+EAELP+ +VD RL QA+EI+++LL P
Sbjct: 200 LIRGRGSIKDPIKEDMMRGKPGYEHLNEPLHILVEAELPIEIVDARLMQAREILDDLLTP 259
Query: 231 VDETQDFYKRQQLRELAMLNSNFREESPQLSGSLSPFTSNEIKRAKT 277
V+ET DFYK+QQLRELA+LN + REE +SGS+SP+ S +KRAKT
Sbjct: 260 VEETHDFYKKQQLRELALLNGSLREEGSPMSGSISPYNSLGMKRAKT 306
>AT1G09660.1 | Symbols: | RNA-binding KH domain-containing protein
| chr1:3128032-3130791 REVERSE LENGTH=298
Length = 298
Score = 261 bits (667), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 142/266 (53%), Positives = 175/266 (65%), Gaps = 31/266 (11%)
Query: 32 QYLAELLEEYQKLRPFMQVLPLCTRLLNQEILRVSGKNGLIQNQGFSDYDRVQFGSHNPS 91
+YL ELL+E QKL PF+QV+P C RLLN EI RVS F D DR + GS S
Sbjct: 44 RYLTELLQERQKLGPFLQVMPNCCRLLNHEIRRVSS---------FPDLDRYEHGSPFRS 94
Query: 92 LLPSLETTTNFTGWNSLS------------HKGLN-VDWQTTPSVPNSPIVKRILRLDIP 138
L + GW+ + +G + V W P +PN PIVK+++RLD+P
Sbjct: 95 LGQPTNGKLDLEGWSMMQAEENCHLQRASPFRGPSPVGWIGMPGLPNPPIVKKVIRLDVP 154
Query: 139 SDSYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGQGSIKDPDKEEVLRGKPGYEHLNE 198
D YP++NFVGR+LGPRGNSLKRVE T CRVFIRG+GS+KD KEE L+GKPGYEHL E
Sbjct: 155 VDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGKPGYEHLCE 214
Query: 199 PLHVLIEAELPVNVVDIRLRQAQEIIENLLKPVDETQDFYKRQQLRELAMLNSNFREESP 258
PLHVLIEAELP ++++ RL A +E+LLKP+DE+ D YKR+QL+ELA LN REESP
Sbjct: 215 PLHVLIEAELPEDIINSRLEHAVHFLESLLKPMDESMDHYKREQLKELAALNGTLREESP 274
Query: 259 Q------LSGSLSPFTSNEIKRAKTD 278
LS S+SPF S KRAKT+
Sbjct: 275 SPSLSPCLSPSMSPFNS---KRAKTE 297
>AT1G09660.2 | Symbols: | RNA-binding KH domain-containing protein
| chr1:3128205-3130791 REVERSE LENGTH=264
Length = 264
Score = 212 bits (540), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/213 (52%), Positives = 140/213 (65%), Gaps = 22/213 (10%)
Query: 32 QYLAELLEEYQKLRPFMQVLPLCTRLLNQEILRVSGKNGLIQNQGFSDYDRVQFGSHNPS 91
+YL ELL+E QKL PF+QV+P C RLLN EI RVS F D DR + GS S
Sbjct: 44 RYLTELLQERQKLGPFLQVMPNCCRLLNHEIRRVSS---------FPDLDRYEHGSPFRS 94
Query: 92 LLPSLETTTNFTGWNSLS------------HKGLN-VDWQTTPSVPNSPIVKRILRLDIP 138
L + GW+ + +G + V W P +PN PIVK+++RLD+P
Sbjct: 95 LGQPTNGKLDLEGWSMMQAEENCHLQRASPFRGPSPVGWIGMPGLPNPPIVKKVIRLDVP 154
Query: 139 SDSYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGQGSIKDPDKEEVLRGKPGYEHLNE 198
D YP++NFVGR+LGPRGNSLKRVE T CRVFIRG+GS+KD KEE L+GKPGYEHL E
Sbjct: 155 VDKYPSYNFVGRILGPRGNSLKRVELATHCRVFIRGRGSVKDTVKEEKLKGKPGYEHLCE 214
Query: 199 PLHVLIEAELPVNVVDIRLRQAQEIIENLLKPV 231
PLHVLIEAELP ++++ RL A +E+LLKP+
Sbjct: 215 PLHVLIEAELPEDIINSRLEHAVHFLESLLKPM 247
>AT5G51300.3 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 80/125 (64%), Gaps = 10/125 (8%)
Query: 134 RLDIPSDSYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGQGSIKDP--DKEEVLRGKP 191
+L IP +P +NF+G ++GPRGN+ KR+E TG ++ IRG+GS+K+ +++ L+ P
Sbjct: 244 KLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQKKDLKYDP 303
Query: 192 GYEHLNEPLHVLIEAELPVNVVDIRLRQAQEIIENLLKPVDETQDFYKRQQLRELAMLNS 251
NE LHVL+EAE L A ++E LL+PVDE + +KRQQLRELA LN
Sbjct: 304 ---SENEDLHVLVEAE-----TQEALEAAAGMVEKLLQPVDEVLNEHKRQQLRELATLNG 355
Query: 252 NFREE 256
R+E
Sbjct: 356 TIRDE 360
>AT5G51300.2 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 80/125 (64%), Gaps = 10/125 (8%)
Query: 134 RLDIPSDSYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGQGSIKDP--DKEEVLRGKP 191
+L IP +P +NF+G ++GPRGN+ KR+E TG ++ IRG+GS+K+ +++ L+ P
Sbjct: 244 KLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQKKDLKYDP 303
Query: 192 GYEHLNEPLHVLIEAELPVNVVDIRLRQAQEIIENLLKPVDETQDFYKRQQLRELAMLNS 251
NE LHVL+EAE L A ++E LL+PVDE + +KRQQLRELA LN
Sbjct: 304 ---SENEDLHVLVEAE-----TQEALEAAAGMVEKLLQPVDEVLNEHKRQQLRELATLNG 355
Query: 252 NFREE 256
R+E
Sbjct: 356 TIRDE 360
>AT5G51300.1 | Symbols: | splicing factor-related |
chr5:20849881-20852295 REVERSE LENGTH=804
Length = 804
Score = 102 bits (253), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 80/125 (64%), Gaps = 10/125 (8%)
Query: 134 RLDIPSDSYPNFNFVGRLLGPRGNSLKRVEATTGCRVFIRGQGSIKDP--DKEEVLRGKP 191
+L IP +P +NF+G ++GPRGN+ KR+E TG ++ IRG+GS+K+ +++ L+ P
Sbjct: 244 KLFIPMKEFPGYNFIGLIIGPRGNTQKRMERETGAKIVIRGKGSVKEGRHQQKKDLKYDP 303
Query: 192 GYEHLNEPLHVLIEAELPVNVVDIRLRQAQEIIENLLKPVDETQDFYKRQQLRELAMLNS 251
NE LHVL+EAE L A ++E LL+PVDE + +KRQQLRELA LN
Sbjct: 304 ---SENEDLHVLVEAE-----TQEALEAAAGMVEKLLQPVDEVLNEHKRQQLRELATLNG 355
Query: 252 NFREE 256
R+E
Sbjct: 356 TIRDE 360