Miyakogusa Predicted Gene

Lj0g3v0212869.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0212869.1 Non Chatacterized Hit- tr|B9SB96|B9SB96_RICCO
Putative uncharacterized protein OS=Ricinus communis
G,39.55,3e-19,FAMILY NOT NAMED,NULL; DUF599,Protein of unknown
function DUF599; seg,NULL,NODE_61825_length_576_cov_38.057293.path1.1
         (138 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT3G18215.1 | Symbols:  | Protein of unknown function, DUF599 | ...   129   7e-31
AT5G24600.1 | Symbols:  | Protein of unknown function, DUF599 | ...   117   2e-27
AT5G24600.2 | Symbols:  | Protein of unknown function, DUF599 | ...   117   2e-27
AT5G10580.2 | Symbols:  | Protein of unknown function, DUF599 | ...    63   5e-11
AT5G10580.1 | Symbols:  | Protein of unknown function, DUF599 | ...    63   6e-11
AT4G31330.1 | Symbols:  | Protein of unknown function, DUF599 | ...    58   2e-09
AT5G46060.1 | Symbols:  | Protein of unknown function, DUF599 | ...    52   1e-07
AT5G24790.1 | Symbols:  | Protein of unknown function, DUF599 | ...    51   2e-07

>AT3G18215.1 | Symbols:  | Protein of unknown function, DUF599 |
           chr3:6240968-6242358 FORWARD LENGTH=244
          Length = 244

 Score =  129 bits (323), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 66/137 (48%), Positives = 83/137 (60%), Gaps = 4/137 (2%)

Query: 6   LDFIXXXXXXXXXXIYHVWLLYTIIRYPSRTVIGLNAQSRYQWVFALMSDPLKNGVLAVQ 65
           LD +           YHVWL+Y I+  P  TVI LNA+SR QWVF++M++PLKNG LAVQ
Sbjct: 7   LDLVLVPTGLVVMVAYHVWLVYAILHRPKLTVIALNAESRRQWVFSMMTEPLKNGTLAVQ 66

Query: 66  TIRNNIMXXXXXXXXXXXXXXXXGVFA----SNDTEESKLIYGNKTSLNSSIKRLCISVC 121
           TIRNNIM                GVF     S+ +  + LIYG+K+   +S K   I +C
Sbjct: 67  TIRNNIMASTLLATTAITLCSIIGVFVSNSSSSKSTATNLIYGSKSPRLASFKNFAILIC 126

Query: 122 FLVAFLCNVQSIRYYAQ 138
           FL+AFLCN+QSIRYYA 
Sbjct: 127 FLMAFLCNIQSIRYYAH 143


>AT5G24600.1 | Symbols:  | Protein of unknown function, DUF599 |
           chr5:8421790-8423342 REVERSE LENGTH=248
          Length = 248

 Score =  117 bits (294), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/140 (45%), Positives = 81/140 (57%), Gaps = 2/140 (1%)

Query: 1   MEVKYLDFIXXXXXXXXXXIYHVWLLYTIIRYPSRTVIGLNAQSRYQWVFALMSDPLKNG 60
           M+ +YLD+            YH+WLLY II  PS TV+GLNA +R  WV A+M D  KNG
Sbjct: 1   MKREYLDYTLVPLGLALMVFYHLWLLYRIIHRPSSTVVGLNAFNRRLWVQAMMEDSSKNG 60

Query: 61  VLAVQTIRNNIMXXXXXXXXXXXXXXXXGVFASNDTEESKL--IYGNKTSLNSSIKRLCI 118
           VLAVQT+RNNIM                 V  ++ T E  +  ++G+K+    S+K   I
Sbjct: 61  VLAVQTLRNNIMASTLLASTAIMLCSLIAVLMTSATGERSVWFVFGDKSDRAFSLKFFAI 120

Query: 119 SVCFLVAFLCNVQSIRYYAQ 138
            VCFLVAFL NVQSIRYY+ 
Sbjct: 121 LVCFLVAFLLNVQSIRYYSH 140


>AT5G24600.2 | Symbols:  | Protein of unknown function, DUF599 |
           chr5:8421697-8423342 REVERSE LENGTH=243
          Length = 243

 Score =  117 bits (293), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 64/140 (45%), Positives = 81/140 (57%), Gaps = 2/140 (1%)

Query: 1   MEVKYLDFIXXXXXXXXXXIYHVWLLYTIIRYPSRTVIGLNAQSRYQWVFALMSDPLKNG 60
           M+ +YLD+            YH+WLLY II  PS TV+GLNA +R  WV A+M D  KNG
Sbjct: 1   MKREYLDYTLVPLGLALMVFYHLWLLYRIIHRPSSTVVGLNAFNRRLWVQAMMEDSSKNG 60

Query: 61  VLAVQTIRNNIMXXXXXXXXXXXXXXXXGVFASNDTEESKL--IYGNKTSLNSSIKRLCI 118
           VLAVQT+RNNIM                 V  ++ T E  +  ++G+K+    S+K   I
Sbjct: 61  VLAVQTLRNNIMASTLLASTAIMLCSLIAVLMTSATGERSVWFVFGDKSDRAFSLKFFAI 120

Query: 119 SVCFLVAFLCNVQSIRYYAQ 138
            VCFLVAFL NVQSIRYY+ 
Sbjct: 121 LVCFLVAFLLNVQSIRYYSH 140


>AT5G10580.2 | Symbols:  | Protein of unknown function, DUF599 |
           chr5:3347511-3349045 FORWARD LENGTH=192
          Length = 192

 Score = 63.2 bits (152), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 4/141 (2%)

Query: 2   EVKYLDFIXXXXXXXXXXIYHVWLLYTIIRYPSRTVIGLNAQSRYQWVFALMSDPLKNGV 61
           E  YLD +           YH++L Y +   P  T++G N+++R  WV A+M D  K  +
Sbjct: 4   EKWYLDAVLVPSALLMMFGYHIYLWYKVRTDPFCTIVGTNSRARRSWVAAIMKDNEKKNI 63

Query: 62  LAVQTIRNNIMXXXXXXXX-XXXXXXXXGVFASNDTEESKL---IYGNKTSLNSSIKRLC 117
           LAVQT+RN IM                  V +S  + +  L   +YG       ++K + 
Sbjct: 64  LAVQTLRNTIMGGTLMATTCILLCAGLAAVLSSTYSIKKPLNDAVYGAHGDFTVALKYVT 123

Query: 118 ISVCFLVAFLCNVQSIRYYAQ 138
           I   FL AF  +  SIR+  Q
Sbjct: 124 ILTIFLFAFFSHSLSIRFINQ 144


>AT5G10580.1 | Symbols:  | Protein of unknown function, DUF599 |
           chr5:3347511-3348657 FORWARD LENGTH=246
          Length = 246

 Score = 63.2 bits (152), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/141 (30%), Positives = 64/141 (45%), Gaps = 4/141 (2%)

Query: 2   EVKYLDFIXXXXXXXXXXIYHVWLLYTIIRYPSRTVIGLNAQSRYQWVFALMSDPLKNGV 61
           E  YLD +           YH++L Y +   P  T++G N+++R  WV A+M D  K  +
Sbjct: 4   EKWYLDAVLVPSALLMMFGYHIYLWYKVRTDPFCTIVGTNSRARRSWVAAIMKDNEKKNI 63

Query: 62  LAVQTIRNNIMXXXXXXXX-XXXXXXXXGVFASNDTEESKL---IYGNKTSLNSSIKRLC 117
           LAVQT+RN IM                  V +S  + +  L   +YG       ++K + 
Sbjct: 64  LAVQTLRNTIMGGTLMATTCILLCAGLAAVLSSTYSIKKPLNDAVYGAHGDFTVALKYVT 123

Query: 118 ISVCFLVAFLCNVQSIRYYAQ 138
           I   FL AF  +  SIR+  Q
Sbjct: 124 ILTIFLFAFFSHSLSIRFINQ 144


>AT4G31330.1 | Symbols:  | Protein of unknown function, DUF599 |
           chr4:15202354-15203151 FORWARD LENGTH=239
          Length = 239

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/138 (29%), Positives = 63/138 (45%), Gaps = 4/138 (2%)

Query: 5   YLDFIXXXXXXXXXXIYHVWLLYTIIRYPSRTVIGLNAQSRYQWVFALMSDPLKNGVLAV 64
           YLD I           YHV+L + +   P  T+IG NA++R  WV +++ D  K  +LAV
Sbjct: 7   YLDVILVPLGLMVYASYHVYLWHKLRTQPLTTIIGTNARARRFWVASIIKDNDKKNILAV 66

Query: 65  QTIRNNIMXXXXXXXXXXXX-XXXXGVFASNDTEESKL---IYGNKTSLNSSIKRLCISV 120
           QT+RN IM                  V +S    +  L   ++G +     ++K + I  
Sbjct: 67  QTLRNCIMGSTLMATTSILLCAGLAAVLSSTYAVKKPLNDAVFGARGEFMVALKYVTILT 126

Query: 121 CFLVAFLCNVQSIRYYAQ 138
            FL +F  +  SIR+  Q
Sbjct: 127 IFLFSFFSHSLSIRFINQ 144


>AT5G46060.1 | Symbols:  | Protein of unknown function, DUF599 |
           chr5:18681533-18682459 FORWARD LENGTH=248
          Length = 248

 Score = 52.0 bits (123), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/136 (26%), Positives = 56/136 (41%), Gaps = 5/136 (3%)

Query: 4   KYLDFIXXXXXXXXXXIYHVWLLYTIIRYPSRTVIGLNAQSRYQWVFALMSDPLKNGVLA 63
           +YLD +           YH++LLY I+ +P  T+IG     +  WV  +M         A
Sbjct: 8   EYLDLVLVPFGLIIVLSYHLFLLYRILYFPYHTIIGFMNIDKSIWVDRIMQARKDELGGA 67

Query: 64  VQTIRNNIMXXXXXXXXXXXXXXXXGVF-----ASNDTEESKLIYGNKTSLNSSIKRLCI 118
           +  + ++I                 G +      S        IYG+ +S+   IK   +
Sbjct: 68  LTVLSSSISASTFMASIALTLSSLIGAWIGSSPVSMTVFTGHFIYGDTSSITMVIKYTSL 127

Query: 119 SVCFLVAFLCNVQSIR 134
            +CFLVAF C +QS R
Sbjct: 128 LICFLVAFCCFIQSTR 143


>AT5G24790.1 | Symbols:  | Protein of unknown function, DUF599 |
          chr5:8512076-8513064 FORWARD LENGTH=246
          Length = 246

 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 38/68 (55%)

Query: 5  YLDFIXXXXXXXXXXIYHVWLLYTIIRYPSRTVIGLNAQSRYQWVFALMSDPLKNGVLAV 64
          YLD I           YH++L + +   P  T++G+N+  R  W+ A++ D  K  +LAV
Sbjct: 7  YLDAILVPLALMMMICYHIYLSFMVRTNPFSTLLGINSHGRRIWISAMIKDNQKTNILAV 66

Query: 65 QTIRNNIM 72
          QT+RN +M
Sbjct: 67 QTLRNIVM 74