Miyakogusa Predicted Gene

Lj0g3v0212609.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0212609.1 Non Chatacterized Hit- tr|I1IA29|I1IA29_BRADI
Uncharacterized protein OS=Brachypodium distachyon
GN=,96.08,3e-19,EUKARYOTIC TRANSLATION ELONGATION FACTOR 2,NULL;
TRANSLATION FACTOR,NULL; no description,NULL;
P-loo,NODE_51234_length_148_cov_192.520264.path1.1
         (52 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT1G56070.1 | Symbols: LOS1 | Ribosomal protein S5/Elongation fa...   103   2e-23
AT3G12915.2 | Symbols:  | Ribosomal protein S5/Elongation factor...    62   7e-11
AT3G12915.1 | Symbols:  | Ribosomal protein S5/Elongation factor...    62   7e-11

>AT1G56070.1 | Symbols: LOS1 | Ribosomal protein S5/Elongation
          factor G/III/V family protein | chr1:20968245-20971077
          REVERSE LENGTH=843
          Length = 843

 Score =  103 bits (257), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 50/52 (96%), Positives = 51/52 (98%)

Query: 1  MVKFTAEELRRIMDLKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG 52
          MVKFTA+ELRRIMD KHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG
Sbjct: 1  MVKFTADELRRIMDYKHNIRNMSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG 52


>AT3G12915.2 | Symbols:  | Ribosomal protein S5/Elongation factor
          G/III/V family protein | chr3:4112999-4115708 FORWARD
          LENGTH=767
          Length = 767

 Score = 62.4 bits (150), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/31 (96%), Positives = 30/31 (96%)

Query: 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG 52
          MSVIAHVDHGKSTLTDSLVAAAGIIAQE AG
Sbjct: 1  MSVIAHVDHGKSTLTDSLVAAAGIIAQETAG 31


>AT3G12915.1 | Symbols:  | Ribosomal protein S5/Elongation factor
          G/III/V family protein | chr3:4112999-4115708 FORWARD
          LENGTH=820
          Length = 820

 Score = 62.4 bits (150), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 30/31 (96%), Positives = 30/31 (96%)

Query: 22 MSVIAHVDHGKSTLTDSLVAAAGIIAQEVAG 52
          MSVIAHVDHGKSTLTDSLVAAAGIIAQE AG
Sbjct: 1  MSVIAHVDHGKSTLTDSLVAAAGIIAQETAG 31