Miyakogusa Predicted Gene
- Lj0g3v0212379.1
BLASTP 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= Lj0g3v0212379.1 Non Chatacterized Hit- tr|I1Q6U9|I1Q6U9_ORYGL
Uncharacterized protein OS=Oryza glaberrima PE=4
SV=1,35.48,4e-16,BASIC HELIX-LOOP-HELIX (BHLH) FAMILY PROTEIN,NULL;
STEROL REGULATORY ELEMENT-BINDING PROTEIN,NULL,CUFF.13669.1
(173 letters)
Database: TAIR10_pep
35,386 sequences; 14,482,855 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AT1G69010.1 | Symbols: BIM2 | BES1-interacting Myc-like protein ... 154 3e-38
AT5G08130.1 | Symbols: BIM1 | basic helix-loop-helix (bHLH) DNA-... 60 9e-10
AT5G08130.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-bind... 60 9e-10
AT5G08130.5 | Symbols: BIM1 | basic helix-loop-helix (bHLH) DNA-... 60 9e-10
AT5G08130.6 | Symbols: BIM1 | basic helix-loop-helix (bHLH) DNA-... 60 9e-10
AT5G08130.4 | Symbols: BIM1 | basic helix-loop-helix (bHLH) DNA-... 60 1e-09
AT5G08130.2 | Symbols: BIM1 | basic helix-loop-helix (bHLH) DNA-... 60 1e-09
>AT1G69010.1 | Symbols: BIM2 | BES1-interacting Myc-like protein 2 |
chr1:25941804-25943599 FORWARD LENGTH=311
Length = 311
Score = 154 bits (389), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/172 (47%), Positives = 110/172 (63%), Gaps = 18/172 (10%)
Query: 2 PWRNSHWRVQNFVGQPPAVRNGSGPVSPFPAKFDDSNVSISPTMLSGTQNMIDPDQSRDI 61
PWRN+HWRVQ+ P A+ NGSGP PFP KF+D+ V+ +P +++ Q I+ D++R I
Sbjct: 118 PWRNNHWRVQSLGNHPVAINNGSGPGIPFPGKFEDNTVTSTPAIIAEPQIPIESDKARAI 177
Query: 62 LSKTAERQPDLVSKGIPLPLAMHANMSVPVRSDGVPAHPLQGTLSDAQSTECPATSEPQN 121
+ E QP+L KG+P P P+ + Q+ ECPATS+
Sbjct: 178 TGISIESQPELDDKGLP------------------PLQPILPMVQGEQANECPATSDGLG 219
Query: 122 QQDELTVEGGTISISSVYSQGLLNNLTQALQSAGLDLSQASISVQINLGNRA 173
Q ++L +EGGTISISS YS LL++LTQALQ+AG+DLSQA +SVQI+LG RA
Sbjct: 220 QSNDLVIEGGTISISSAYSHELLSSLTQALQNAGIDLSQAKLSVQIDLGKRA 271
>AT5G08130.1 | Symbols: BIM1 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:2606655-2608652
REVERSE LENGTH=409
Length = 409
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 58/96 (60%)
Query: 78 PLPLAMHANMSVPVRSDGVPAHPLQGTLSDAQSTECPATSEPQNQQDELTVEGGTISISS 137
P PL++ +N G P ++ +++ E +S Q ++++ V G I ISS
Sbjct: 279 PFPLSIQSNSFFSPVIAGNPVPQFHARVASSEAVEPSPSSRSQKEEEDEEVLEGNIRISS 338
Query: 138 VYSQGLLNNLTQALQSAGLDLSQASISVQINLGNRA 173
VYSQGL+ L +AL+++G+DL++ASISV+I L ++
Sbjct: 339 VYSQGLVKTLREALENSGVDLTKASISVEIELAKQS 374
>AT5G08130.3 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:2606655-2608652 REVERSE
LENGTH=408
Length = 408
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 58/96 (60%)
Query: 78 PLPLAMHANMSVPVRSDGVPAHPLQGTLSDAQSTECPATSEPQNQQDELTVEGGTISISS 137
P PL++ +N G P ++ +++ E +S Q ++++ V G I ISS
Sbjct: 278 PFPLSIQSNSFFSPVIAGNPVPQFHARVASSEAVEPSPSSRSQKEEEDEEVLEGNIRISS 337
Query: 138 VYSQGLLNNLTQALQSAGLDLSQASISVQINLGNRA 173
VYSQGL+ L +AL+++G+DL++ASISV+I L ++
Sbjct: 338 VYSQGLVKTLREALENSGVDLTKASISVEIELAKQS 373
>AT5G08130.5 | Symbols: BIM1 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:2606655-2609571
REVERSE LENGTH=532
Length = 532
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 58/96 (60%)
Query: 78 PLPLAMHANMSVPVRSDGVPAHPLQGTLSDAQSTECPATSEPQNQQDELTVEGGTISISS 137
P PL++ +N G P ++ +++ E +S Q ++++ V G I ISS
Sbjct: 402 PFPLSIQSNSFFSPVIAGNPVPQFHARVASSEAVEPSPSSRSQKEEEDEEVLEGNIRISS 461
Query: 138 VYSQGLLNNLTQALQSAGLDLSQASISVQINLGNRA 173
VYSQGL+ L +AL+++G+DL++ASISV+I L ++
Sbjct: 462 VYSQGLVKTLREALENSGVDLTKASISVEIELAKQS 497
>AT5G08130.6 | Symbols: BIM1 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:2606655-2609571
REVERSE LENGTH=529
Length = 529
Score = 59.7 bits (143), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 58/96 (60%)
Query: 78 PLPLAMHANMSVPVRSDGVPAHPLQGTLSDAQSTECPATSEPQNQQDELTVEGGTISISS 137
P PL++ +N G P ++ +++ E +S Q ++++ V G I ISS
Sbjct: 399 PFPLSIQSNSFFSPVIAGNPVPQFHARVASSEAVEPSPSSRSQKEEEDEEVLEGNIRISS 458
Query: 138 VYSQGLLNNLTQALQSAGLDLSQASISVQINLGNRA 173
VYSQGL+ L +AL+++G+DL++ASISV+I L ++
Sbjct: 459 VYSQGLVKTLREALENSGVDLTKASISVEIELAKQS 494
>AT5G08130.4 | Symbols: BIM1 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:2606655-2609571
REVERSE LENGTH=529
Length = 529
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 58/96 (60%)
Query: 78 PLPLAMHANMSVPVRSDGVPAHPLQGTLSDAQSTECPATSEPQNQQDELTVEGGTISISS 137
P PL++ +N G P ++ +++ E +S Q ++++ V G I ISS
Sbjct: 399 PFPLSIQSNSFFSPVIAGNPVPQFHARVASSEAVEPSPSSRSQKEEEDEEVLEGNIRISS 458
Query: 138 VYSQGLLNNLTQALQSAGLDLSQASISVQINLGNRA 173
VYSQGL+ L +AL+++G+DL++ASISV+I L ++
Sbjct: 459 VYSQGLVKTLREALENSGVDLTKASISVEIELAKQS 494
>AT5G08130.2 | Symbols: BIM1 | basic helix-loop-helix (bHLH)
DNA-binding superfamily protein | chr5:2606655-2609571
REVERSE LENGTH=529
Length = 529
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 58/96 (60%)
Query: 78 PLPLAMHANMSVPVRSDGVPAHPLQGTLSDAQSTECPATSEPQNQQDELTVEGGTISISS 137
P PL++ +N G P ++ +++ E +S Q ++++ V G I ISS
Sbjct: 399 PFPLSIQSNSFFSPVIAGNPVPQFHARVASSEAVEPSPSSRSQKEEEDEEVLEGNIRISS 458
Query: 138 VYSQGLLNNLTQALQSAGLDLSQASISVQINLGNRA 173
VYSQGL+ L +AL+++G+DL++ASISV+I L ++
Sbjct: 459 VYSQGLVKTLREALENSGVDLTKASISVEIELAKQS 494