Miyakogusa Predicted Gene

Lj0g3v0211739.1
Show Alignment:  

BLASTP 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= Lj0g3v0211739.1 CUFF.13637.1
         (817 letters)

Database: TAIR10_pep 
           35,386 sequences; 14,482,855 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AT5G44180.2 | Symbols:  | Homeodomain-like transcriptional regul...   820   0.0  
AT5G44180.1 | Symbols:  | Homeodomain-like transcriptional regul...   819   0.0  
AT1G28420.1 | Symbols: HB-1 | homeobox-1 | chr1:9979936-9987460 ...   695   0.0  
AT4G12750.1 | Symbols:  | Homeodomain-like transcriptional regul...   136   7e-32
AT4G03250.1 | Symbols:  | Homeodomain-like superfamily protein |...    85   2e-16

>AT5G44180.2 | Symbols:  | Homeodomain-like transcriptional
           regulator | chr5:17783172-17789872 FORWARD LENGTH=1507
          Length = 1507

 Score =  820 bits (2117), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/830 (54%), Positives = 554/830 (66%), Gaps = 63/830 (7%)

Query: 1   MECGSEEENKKNTPEG---ENKVKRKMKSASQLELLEKTYAVEAYPGEVLRAELSEKLGL 57
           ME GSE    K TPEG   E+K KRKMK+A+QLE+LE TY+ E YP E +RA+LS KL L
Sbjct: 1   MEGGSE----KTTPEGCGGESKSKRKMKTAAQLEVLENTYSAEPYPSEAIRADLSVKLNL 56

Query: 58  SDRQLQMWFCHRRLKDRKATPGSNKLLNDSPPTSGPVGERAEQVAKADVK--HDGGVASE 115
           SDRQLQMWFCHRRLK+RK+T  S +             +R E V    ++       A +
Sbjct: 57  SDRQLQMWFCHRRLKERKSTTPSKR-------------QRKELVTPTAMESWEPPVNAGD 103

Query: 116 LRPFGHPDSWRVVPQPGIMAFPIMGAAGLPAMESSSYNEPHQTREELRAIAFMERQLGEP 175
           L      DS R             G+ G        +NEP     E+RAI ++E QLGE 
Sbjct: 104 LVAGNELDSRRAA----------RGSGGSGVTVVRRFNEPSSA--EVRAIGYVEAQLGER 151

Query: 176 LREDGPILGMEFDSLPPGAFGAPIGAVTMGQHRQSGR-TLEAKTYEQLD-KGVSS--RTL 231
           LR++GP+LGMEFD LPPGAFG PI    M  HR++ R   E   Y + D K +    R +
Sbjct: 152 LRDNGPVLGMEFDPLPPGAFGMPI---EMPSHRKATRQAFETNIYVRSDVKPIKDHVRPI 208

Query: 232 HEYQFIPEQPTVKIEKYERVSPSIHFSSP-DGIPHRRTLLPSGRSCLNGNESAPYGYGVQ 290
            EYQFIPE P+ + +  ERVSPS HF  P DG   R + + +G             Y + 
Sbjct: 209 REYQFIPELPSSRTDHSERVSPSHHFGVPLDGSVMRVSAVSAGHRD---------DYKIS 259

Query: 291 GQIPRLNLLSEQGRQNHLFPSASGGNDVLQKNPFIDATFETHNGAHPITLIDSPLMPSNR 350
            QIP LNL + QG+  H++      N V   +P+  +  +T    H     D P + S R
Sbjct: 260 PQIPNLNLATHQGKPGHVYSP----NLVEYDSPYQKSYMDTAAQVH-----DDPFVKSER 310

Query: 351 RVIHEEELS---RFQRKRKIEEARMQRELEAQEKRIRKELEKQDILRQKREEQIKKEMER 407
            V +E+E     + +R RK EEAR+ RE+EA EKRIR+ELEKQD+LR+KREEQI+KEMER
Sbjct: 311 EVGNEDEDDDALQLERHRKNEEARIAREVEAHEKRIRRELEKQDMLRRKREEQIRKEMER 370

Query: 408 HNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIRAEKLRQKEELRRVKEA 467
            +                                       +IRAEK+RQKEE+R+ KE 
Sbjct: 371 QDRERRKEEERLLREKQREEERYLKEQMRELQRREKFLKKETIRAEKMRQKEEMRKEKEV 430

Query: 468 ARIKASNERAIARRMAKESMELIDDERLELMELAASKKGLSSILALDYETMQNLDLYQDE 527
           AR+KA+NERAIAR++AKESMELI+DERLELME+AA  KGL S+LALD+ET+QNLD Y+D+
Sbjct: 431 ARLKAANERAIARKIAKESMELIEDERLELMEVAALTKGLPSMLALDFETLQNLDEYRDK 490

Query: 528 QTSFPPKSVQLKQAFSIQPWSDSDENVGNLLMVWKFLITFADVLGIWPFTLDELIQAFHD 587
           Q  FPP SV+LK+ F+++PW+ SDENV NLLMVW+FLITFADVLG+WPFTLDE  QAFHD
Sbjct: 491 QAIFPPTSVKLKKPFAVKPWNGSDENVANLLMVWRFLITFADVLGLWPFTLDEFAQAFHD 550

Query: 588 YDSRLLGEIHIALLRCIIKDIEDVARTPFTGLGANQNNVANSGGGHPHVVEGAYLWGFDI 647
           YD RL+GEIHI LL+ IIKDIE V RT  TG+GANQN  AN GGGHPHVVEGAY WGFDI
Sbjct: 551 YDPRLMGEIHIVLLKTIIKDIEGVVRTLSTGVGANQNVAANPGGGHPHVVEGAYAWGFDI 610

Query: 648 RNWQSHLNPLTWPEILRQFALSAGFGPKLKKRNIEQALSGNNDEGSDGKDIISNLRSGAA 707
           R+W+ +LN  TWPEILRQ ALSAG GP+LKK NI      +++E ++ +++I NLR G A
Sbjct: 611 RSWRKNLNVFTWPEILRQLALSAGLGPQLKKMNIRTVSVHDDNEANNSENVIFNLRKGVA 670

Query: 708 AKNAVAIMQEKGLSNPRRSRHRLTPGTVKYAAFHVLSLEGSKGLNILEVADKIQKSGLRD 767
           A+NA A MQE+GLSNPRRSRHRLTPGTVK+AAFHVLSLEG KGLNILEVA+KIQKSGLRD
Sbjct: 671 AENAFAKMQERGLSNPRRSRHRLTPGTVKFAAFHVLSLEGEKGLNILEVAEKIQKSGLRD 730

Query: 768 LTTSKTPEASISAALSRDTKLFERTAPSTYCVRPAYRKDPADSVAIYSAA 817
           LTTS+TPEAS++AALSRDTKLFER APSTYCVR +YRKD  D+  I++ A
Sbjct: 731 LTTSRTPEASVAAALSRDTKLFERVAPSTYCVRASYRKDAGDAETIFAEA 780


>AT5G44180.1 | Symbols:  | Homeodomain-like transcriptional
           regulator | chr5:17783172-17789872 FORWARD LENGTH=1694
          Length = 1694

 Score =  819 bits (2115), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 451/830 (54%), Positives = 554/830 (66%), Gaps = 63/830 (7%)

Query: 1   MECGSEEENKKNTPEG---ENKVKRKMKSASQLELLEKTYAVEAYPGEVLRAELSEKLGL 57
           ME GSE    K TPEG   E+K KRKMK+A+QLE+LE TY+ E YP E +RA+LS KL L
Sbjct: 1   MEGGSE----KTTPEGCGGESKSKRKMKTAAQLEVLENTYSAEPYPSEAIRADLSVKLNL 56

Query: 58  SDRQLQMWFCHRRLKDRKATPGSNKLLNDSPPTSGPVGERAEQVAKADVK--HDGGVASE 115
           SDRQLQMWFCHRRLK+RK+T  S +             +R E V    ++       A +
Sbjct: 57  SDRQLQMWFCHRRLKERKSTTPSKR-------------QRKELVTPTAMESWEPPVNAGD 103

Query: 116 LRPFGHPDSWRVVPQPGIMAFPIMGAAGLPAMESSSYNEPHQTREELRAIAFMERQLGEP 175
           L      DS R             G+ G        +NEP     E+RAI ++E QLGE 
Sbjct: 104 LVAGNELDSRRAA----------RGSGGSGVTVVRRFNEPSSA--EVRAIGYVEAQLGER 151

Query: 176 LREDGPILGMEFDSLPPGAFGAPIGAVTMGQHRQSGR-TLEAKTYEQLD-KGVSS--RTL 231
           LR++GP+LGMEFD LPPGAFG PI    M  HR++ R   E   Y + D K +    R +
Sbjct: 152 LRDNGPVLGMEFDPLPPGAFGMPI---EMPSHRKATRQAFETNIYVRSDVKPIKDHVRPI 208

Query: 232 HEYQFIPEQPTVKIEKYERVSPSIHFSSP-DGIPHRRTLLPSGRSCLNGNESAPYGYGVQ 290
            EYQFIPE P+ + +  ERVSPS HF  P DG   R + + +G             Y + 
Sbjct: 209 REYQFIPELPSSRTDHSERVSPSHHFGVPLDGSVMRVSAVSAGHRD---------DYKIS 259

Query: 291 GQIPRLNLLSEQGRQNHLFPSASGGNDVLQKNPFIDATFETHNGAHPITLIDSPLMPSNR 350
            QIP LNL + QG+  H++      N V   +P+  +  +T    H     D P + S R
Sbjct: 260 PQIPNLNLATHQGKPGHVYSP----NLVEYDSPYQKSYMDTAAQVH-----DDPFVKSER 310

Query: 351 RVIHEEELS---RFQRKRKIEEARMQRELEAQEKRIRKELEKQDILRQKREEQIKKEMER 407
            V +E+E     + +R RK EEAR+ RE+EA EKRIR+ELEKQD+LR+KREEQI+KEMER
Sbjct: 311 EVGNEDEDDDALQLERHRKNEEARIAREVEAHEKRIRRELEKQDMLRRKREEQIRKEMER 370

Query: 408 HNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIRAEKLRQKEELRRVKEA 467
            +                                       +IRAEK+RQKEE+R+ KE 
Sbjct: 371 QDRERRKEEERLLREKQREEERYLKEQMRELQRREKFLKKETIRAEKMRQKEEMRKEKEV 430

Query: 468 ARIKASNERAIARRMAKESMELIDDERLELMELAASKKGLSSILALDYETMQNLDLYQDE 527
           AR+KA+NERAIAR++AKESMELI+DERLELME+AA  KGL S+LALD+ET+QNLD Y+D+
Sbjct: 431 ARLKAANERAIARKIAKESMELIEDERLELMEVAALTKGLPSMLALDFETLQNLDEYRDK 490

Query: 528 QTSFPPKSVQLKQAFSIQPWSDSDENVGNLLMVWKFLITFADVLGIWPFTLDELIQAFHD 587
           Q  FPP SV+LK+ F+++PW+ SDENV NLLMVW+FLITFADVLG+WPFTLDE  QAFHD
Sbjct: 491 QAIFPPTSVKLKKPFAVKPWNGSDENVANLLMVWRFLITFADVLGLWPFTLDEFAQAFHD 550

Query: 588 YDSRLLGEIHIALLRCIIKDIEDVARTPFTGLGANQNNVANSGGGHPHVVEGAYLWGFDI 647
           YD RL+GEIHI LL+ IIKDIE V RT  TG+GANQN  AN GGGHPHVVEGAY WGFDI
Sbjct: 551 YDPRLMGEIHIVLLKTIIKDIEGVVRTLSTGVGANQNVAANPGGGHPHVVEGAYAWGFDI 610

Query: 648 RNWQSHLNPLTWPEILRQFALSAGFGPKLKKRNIEQALSGNNDEGSDGKDIISNLRSGAA 707
           R+W+ +LN  TWPEILRQ ALSAG GP+LKK NI      +++E ++ +++I NLR G A
Sbjct: 611 RSWRKNLNVFTWPEILRQLALSAGLGPQLKKMNIRTVSVHDDNEANNSENVIFNLRKGVA 670

Query: 708 AKNAVAIMQEKGLSNPRRSRHRLTPGTVKYAAFHVLSLEGSKGLNILEVADKIQKSGLRD 767
           A+NA A MQE+GLSNPRRSRHRLTPGTVK+AAFHVLSLEG KGLNILEVA+KIQKSGLRD
Sbjct: 671 AENAFAKMQERGLSNPRRSRHRLTPGTVKFAAFHVLSLEGEKGLNILEVAEKIQKSGLRD 730

Query: 768 LTTSKTPEASISAALSRDTKLFERTAPSTYCVRPAYRKDPADSVAIYSAA 817
           LTTS+TPEAS++AALSRDTKLFER APSTYCVR +YRKD  D+  I++ A
Sbjct: 731 LTTSRTPEASVAAALSRDTKLFERVAPSTYCVRASYRKDAGDAETIFAEA 780


>AT1G28420.1 | Symbols: HB-1 | homeobox-1 | chr1:9979936-9987460
           FORWARD LENGTH=1705
          Length = 1705

 Score =  695 bits (1793), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 406/820 (49%), Positives = 510/820 (62%), Gaps = 51/820 (6%)

Query: 12  NTPEGENKVKRKMKSASQLELLEKTYAVEAYPGEVLRAELSEKLGLSDRQLQMWFCHRRL 71
           ++ +G  K KR+MK+  QLE LEK Y+ E YP E  RAELSEKL LSDRQLQMWFCHRRL
Sbjct: 33  SSKDGRVKPKRQMKTPFQLETLEKVYSEEKYPSEATRAELSEKLDLSDRQLQMWFCHRRL 92

Query: 72  KDRKATPGSNKLLNDSPPT--SGPVGE---RAEQVAKADVKHDGGVASELRPFGHP---- 122
           KD+K    SNK +  S     S  V E    A  V + D + D G  S   P+ +     
Sbjct: 93  KDKKDGQ-SNKPVKSSVAAVQSASVNELPAAAGSVPEQDSRSDSGSESGCSPYSNSRRNF 151

Query: 123 DSWRVVPQPGIMAFPIMGAAGLPAMESSSYNEPHQTREELRAIAFMERQLGEPLREDGPI 182
            S     +  +  +  MG    P+ ES      H      RAI  +E QLGEPLR+DGPI
Sbjct: 152 ASGSSSSRAELDEYETMGK---PSYESRLSTMVH------RAIVCIEAQLGEPLRDDGPI 202

Query: 183 LGMEFDSLPPGAFGAPIGAVTMGQHRQSGRTLEAKTYEQLD-----KGVSSRTLHEYQFI 237
           LGMEFD LPPGAFG PI    M +H       E+  YE+ D        ++R+ HE Q +
Sbjct: 203 LGMEFDPLPPGAFGTPIA---MQKHLL--HPYESDLYERHDPRPRRSHAAARSFHEQQSL 257

Query: 238 PEQPTVKIEKYERVSPSIHFSSPDGIPHRRTLLPSGRSCLNGNESAPYGYGVQGQIPRLN 297
            +  +     YER S + H    D    R  +     S ++ N   P  Y   G   R  
Sbjct: 258 DDPSSFTPNMYERYSEN-HARGMDYEVARSRI----SSFMHANGPVPRSYVTPGHASRNC 312

Query: 298 LLSEQGRQNHLFPSASGGNDVLQKNPFIDATFETHNGAHPITLIDSPLMPSNRRVIHEEE 357
             S+Q   + +  +  G   +L+K+  +  T + +            L+P   R     +
Sbjct: 313 STSQQDMPSPIESAHHGDRFLLEKDSSVLGTEDPY------------LLPDGVR-----K 355

Query: 358 LSRFQRKRKIEEARMQRELEAQEKRIRKELEKQDILRQKREEQIKKEMERHNXXXXXXXX 417
            S   RK KI + R+ R  E +E    K+LEK +I R+K EE+++KEMER+         
Sbjct: 356 SSDVHRKGKINDGRLGRGSETRENHGPKDLEKLEIQRKKNEERMRKEMERNERERRKEEE 415

Query: 418 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSIRAEKLRQKEELRRVKEAARIKASNERA 477
                                          + RAEK +QK+E+RR K+A R K + E+A
Sbjct: 416 RLMRERIKEEERLQREQRREVERREKFLQRENERAEKKKQKDEIRREKDAIRRKLAIEKA 475

Query: 478 IARRMAKESMELIDDERLELMELAASKKGLSSILALDYETMQNLDLYQDEQTSFPPKSVQ 537
            ARR+AKESM+LI+DE+LELMELAA  KGL S+L LD++T+QNL++Y+D  ++FPPKS+Q
Sbjct: 476 TARRIAKESMDLIEDEQLELMELAAISKGLPSVLQLDHDTLQNLEVYRDSLSTFPPKSLQ 535

Query: 538 LKQAFSIQPWSDSDENVGNLLMVWKFLITFADVLGIWPFTLDELIQAFHDYDSRLLGEIH 597
           LK  F+I PW DSDE VGNLLMVW+FLI+F+DVL +WPFTLDE IQAFHDYDSRLLGEIH
Sbjct: 536 LKMPFAISPWKDSDETVGNLLMVWRFLISFSDVLDLWPFTLDEFIQAFHDYDSRLLGEIH 595

Query: 598 IALLRCIIKDIEDVARTPFTGLGANQNNVANSGGGHPHVVEGAYLWGFDIRNWQSHLNPL 657
           + LLR II+D+EDVARTPF+G+G NQ   AN  GGHP +VEGAY WGFDIR+W+ HLNPL
Sbjct: 596 VTLLRSIIRDVEDVARTPFSGIGNNQYTTANPEGGHPQIVEGAYAWGFDIRSWKKHLNPL 655

Query: 658 TWPEILRQFALSAGFGPKLKKRNIEQALSGNNDEGSDGKDIISNLRSGAAAKNAVAIMQE 717
           TWPEILRQ ALSAGFGPKLKK++     +G+ DE    +D+IS +R+G AA++A A M+E
Sbjct: 656 TWPEILRQLALSAGFGPKLKKKHSRLTNTGDKDEAKGCEDVISTIRNGTAAESAFASMRE 715

Query: 718 KGLSNPRRSRHRLTPGTVKYAAFHVLSLEGSKGLNILEVADKIQKSGLRDLTTSKTPEAS 777
           KGL  PR+SRHRLTPGTVK+AAFHVLSLEGSKGL +LE+ADKIQKSGLRDLTTSKTPEAS
Sbjct: 716 KGLLAPRKSRHRLTPGTVKFAAFHVLSLEGSKGLTVLELADKIQKSGLRDLTTSKTPEAS 775

Query: 778 ISAALSRDTKLFERTAPSTYCVRPAYRKDPADSVAIYSAA 817
           IS AL+RD KLFER APSTYCVR  Y KDP D  AI + A
Sbjct: 776 ISVALTRDVKLFERIAPSTYCVRAPYVKDPKDGEAILADA 815


>AT4G12750.1 | Symbols:  | Homeodomain-like transcriptional
           regulator | chr4:7498009-7503920 REVERSE LENGTH=1131
          Length = 1131

 Score =  136 bits (342), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 117/367 (31%), Positives = 173/367 (47%), Gaps = 63/367 (17%)

Query: 451 RAEKLRQKEELRRVKEAARIKASNERAIARRMAKESMELIDDERLELME-------LAAS 503
           R  +L + E  R  KE   + A  E  + +   +    L+DDE LE+ E       L  S
Sbjct: 253 REAELNKDETQREFKENCELAADGE--VFKETCQTISTLVDDEELEMRERHERGNPLTCS 310

Query: 504 ----KKGLSSILALDYETMQNLD---LYQDEQTSFPPKSVQLKQAFSIQPWSDSDENVGN 556
                 G           M++ D   L+ D    FPP SVQ++  F + PW+ S E+V  
Sbjct: 311 CHHPSSGSHGCFLCKGIAMRSSDSSLLFPDLLPKFPPNSVQMRMPFGLHPWNSSPESVKK 370

Query: 557 LLMVWKFLITFADVLGIWPFTLDELIQAFHDYDSRLLGEIHIALLRCIIKDIE-DVARTP 615
           L  V  FL T++  L I PFTLDE  +AFHD DS LLG+IH++LL+ ++ D+E ++ R  
Sbjct: 371 LFKVVHFLYTYSVTLDIGPFTLDEFTRAFHDKDSLLLGKIHLSLLKLLLLDVETELERGS 430

Query: 616 FTGLGANQNNVANSGGGHPHVVEGAYLWGFDIRNWQSHLNPLTWPEILRQFALSAGFGPK 675
           F+ L  +   +A         VE   L    +  W++ LN LTW E+LRQ  ++AG+G  
Sbjct: 431 FSNLSISCKFLA-----LLQSVESQIL---ILDMWRNSLNSLTWTELLRQILVAAGYG-- 480

Query: 676 LKKRNIEQALSGNNDEGSDGKDIISNLRSGAAAKNAVAIMQEKGLSNPRR--SRHRLTPG 733
                                          + K AV   Q + LS  R+   ++ L  G
Sbjct: 481 -------------------------------SLKCAV---QSEELSKERKLMKKYGLRLG 506

Query: 734 TVKYAAFHVLSLEGSKGLNILEVADKIQKSGLRDLTTSKTPEASISAALSRDTKLFERTA 793
           T+K   F +L+ +G+ GL I E+AD  + + L   T  +  E SI + L+ D  LFE+ +
Sbjct: 507 TLKGELFRMLNGQGNNGLKISELADAPEVAVLNLATVPEERENSICSTLASDITLFEKIS 566

Query: 794 PSTYCVR 800
            STY VR
Sbjct: 567 ESTYRVR 573


>AT4G03250.1 | Symbols:  | Homeodomain-like superfamily protein |
           chr4:1425050-1427744 FORWARD LENGTH=507
          Length = 507

 Score = 84.7 bits (208), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/220 (28%), Positives = 99/220 (45%), Gaps = 46/220 (20%)

Query: 17  ENKVKRKMKSASQLELLEKTYAVEAYPGEVLRAELSEKLGLSDRQLQMWFCHRRLKDRKA 76
           EN  KRK+K+  Q+  LE  Y    YP E ++ +L+E++GL+++Q+  WFCHRRLKD++ 
Sbjct: 18  ENSKKRKLKTPMQVMALENFYNEHKYPTEEMKGKLAEEVGLTEKQVSGWFCHRRLKDKRH 77

Query: 77  TPGSNKLLNDSPPTSGPVGERAEQVAKADVKHDGGVASELRPFGHPDSWRVVPQPGIMAF 136
                  +     +S  + +R      + ++ D   +++   + +P    V  Q   M  
Sbjct: 78  VKEDGNAIGSQDRSSVVLQDRG-----SGLRQDSCGSTKQTDYWNPKPREVESQRLYMGN 132

Query: 137 P------------------IMGAAGLPAMESS------------------SYNEPH---- 156
                              +    G+  +ESS                   YN+P     
Sbjct: 133 ADGEDSTSSDRSSSLRKNLVSSKDGIRDVESSRYVAHKDVIQHPQFMRSYGYNKPSGYLK 192

Query: 157 -QTREELRAIAFMERQLGEPLREDGPILGMEFDSLPPGAF 195
            +   E  AI  ++RQLG   +EDGP LG+EFD LPPGAF
Sbjct: 193 VKGESENFAITAVKRQLGRQYQEDGPPLGVEFDPLPPGAF 232